Wall clock time and date at job start Mon Mar 30 2020 23:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00274 * 2 1 4 4 H 1.48499 * 109.47367 * 240.00128 * 3 2 1 5 5 H 1.48503 * 109.46980 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47106 * 119.99667 * 3 2 1 7 7 C 1.37880 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99707 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99880 * 0.27226 * 7 2 1 10 10 H 1.08996 * 109.49341 * 59.73032 * 9 7 2 11 11 C 1.53035 * 109.49445 * 179.78866 * 9 7 2 12 12 C 1.53045 * 109.53790 * 181.31775 * 11 9 7 13 13 C 1.53188 * 109.31316 * 298.63914 * 12 11 9 14 14 N 1.46927 * 108.77625 * 54.63203 * 13 12 11 15 15 C 1.34770 * 120.62986 * 126.43560 * 14 13 12 16 16 O 1.21593 * 120.00005 * 174.96762 * 15 14 13 17 17 N 1.34773 * 120.00080 * 354.96734 * 15 14 13 18 18 C 1.46507 * 120.00118 * 185.07823 * 17 15 14 19 19 C 1.50702 * 109.47108 * 179.97438 * 18 17 15 20 20 C 1.30522 * 124.45223 * 95.02222 * 19 18 17 21 21 C 1.51097 * 111.10759 * 179.97438 * 20 19 18 22 22 C 1.54644 * 104.72239 * 16.43701 * 21 20 19 23 23 C 1.51107 * 124.44233 * 274.71812 * 19 18 17 24 24 C 1.46929 * 118.76456 * 306.40949 * 14 13 12 25 25 H 0.97001 * 119.99997 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46337 * 301.34157 * 11 9 7 27 27 H 1.09005 * 109.46014 * 61.30370 * 11 9 7 28 28 H 1.08998 * 109.49270 * 58.58909 * 12 11 9 29 29 H 1.08994 * 109.49795 * 178.65207 * 12 11 9 30 30 H 1.08995 * 109.58649 * 174.42334 * 13 12 11 31 31 H 1.09006 * 109.58447 * 294.84817 * 13 12 11 32 32 H 0.96997 * 120.00223 * 5.07295 * 17 15 14 33 33 H 1.09007 * 109.46496 * 299.99451 * 18 17 15 34 34 H 1.08999 * 109.47463 * 59.99568 * 18 17 15 35 35 H 1.08001 * 124.44183 * 359.97438 * 20 19 18 36 36 H 1.09007 * 110.38790 * 135.24375 * 21 20 19 37 37 H 1.08992 * 110.38855 * 257.62732 * 21 20 19 38 38 H 1.08993 * 111.03350 * 93.39827 * 22 21 20 39 39 H 1.09000 * 111.03028 * 217.29463 * 22 21 20 40 40 H 1.08997 * 110.38379 * 282.39870 * 23 19 18 41 41 H 1.08996 * 110.38991 * 44.77694 * 23 19 18 42 42 H 1.08998 * 109.56983 * 293.79036 * 24 14 13 43 43 H 1.09002 * 109.61922 * 173.35396 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0073 10 1 0.6242 -2.5527 -0.8975 11 6 2.2449 -3.6628 -0.0118 12 6 1.4809 -4.9884 -0.0519 13 6 0.6044 -5.1060 1.1989 14 7 -0.2542 -3.9170 1.2882 15 6 -1.5906 -4.0427 1.4092 16 8 -2.2816 -3.0558 1.5741 17 7 -2.1611 -5.2621 1.3475 18 6 -3.6205 -5.3900 1.3672 19 6 -3.9983 -6.8467 1.2871 20 6 -4.2545 -7.6009 2.3211 21 6 -4.6006 -9.0087 1.8952 22 6 -4.1069 -9.1097 0.4332 23 6 -4.1365 -7.6242 -0.0012 24 6 0.3712 -2.5883 1.2437 25 1 -0.4850 0.8401 -0.0004 26 1 2.8881 -3.5877 -0.8887 27 1 2.8551 -3.6226 0.8905 28 1 0.8516 -5.0187 -0.9413 29 1 2.1896 -5.8160 -0.0793 30 1 -0.0153 -5.9998 1.1281 31 1 1.2374 -5.1668 2.0843 32 1 -1.6056 -6.0552 1.2900 33 1 -4.0101 -4.9635 2.2916 34 1 -4.0434 -4.8579 0.5150 35 1 -4.2233 -7.2630 3.3464 36 1 -4.0814 -9.7336 2.5222 37 1 -5.6780 -9.1661 1.9438 38 1 -3.0957 -9.5141 0.3888 39 1 -4.7913 -9.7056 -0.1706 40 1 -5.0824 -7.3871 -0.4881 41 1 -3.3010 -7.4077 -0.6669 42 1 0.9848 -2.4436 2.1328 43 1 -0.4020 -1.8210 1.2019 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595819188.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:52 Heat of formation + Delta-G solvation = -39.732223 kcal Electronic energy + Delta-G solvation = -22046.980040 eV Core-core repulsion = 18898.045964 eV Total energy + Delta-G solvation = -3148.934077 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.32723 -39.63439 -38.42573 -35.79002 -35.09386 -33.42908 -31.61221 -30.71996 -29.24157 -27.14219 -26.58830 -25.10851 -23.44015 -21.74053 -21.70149 -20.54223 -19.46308 -18.70881 -18.17522 -17.33186 -16.63712 -16.52053 -16.25579 -16.12055 -15.21387 -15.15965 -15.06363 -14.78992 -14.35876 -14.25738 -13.74482 -13.55858 -13.53043 -12.84858 -12.78429 -12.70007 -12.51431 -12.28222 -12.24104 -12.17611 -11.97189 -11.90566 -11.85074 -11.63172 -11.26485 -10.95829 -10.84620 -10.50702 -10.17962 -9.74481 -9.26139 -8.09226 -6.26867 0.99066 1.41449 1.43450 1.51710 1.97593 2.25102 2.43055 3.10723 3.21496 3.58471 3.68402 4.03684 4.14907 4.19027 4.24823 4.28520 4.42765 4.51382 4.60094 4.63141 4.73589 4.81129 4.85299 4.86924 4.93137 5.04026 5.06331 5.10856 5.23935 5.27006 5.28324 5.32866 5.40698 5.50755 5.57036 5.60362 5.65445 5.89372 5.91129 5.98020 6.17418 6.36523 6.86247 7.13023 7.43165 7.66896 8.93924 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030883 B = 0.003831 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.437991 B = 7307.638394 C = 7836.648927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.008 3.992 3 Si 0.959 3.041 4 H -0.267 1.267 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.537 4.537 8 H 0.063 0.937 9 C 0.039 3.961 10 H -0.015 1.015 11 C -0.104 4.104 12 C -0.125 4.125 13 C 0.110 3.890 14 N -0.627 5.627 15 C 0.692 3.308 16 O -0.642 6.642 17 N -0.728 5.728 18 C 0.189 3.811 19 C -0.168 4.168 20 C -0.130 4.130 21 C -0.099 4.099 22 C -0.120 4.120 23 C -0.094 4.094 24 C 0.144 3.856 25 H 0.259 0.741 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.407 0.593 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.128 0.872 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.033 0.967 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.883 -21.959 2.799 22.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.191 4.191 3 Si 0.784 3.216 4 H -0.192 1.192 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.576 4.576 8 H 0.082 0.918 9 C 0.019 3.981 10 H 0.003 0.997 11 C -0.142 4.142 12 C -0.163 4.163 13 C -0.012 4.012 14 N -0.363 5.363 15 C 0.394 3.606 16 O -0.524 6.524 17 N -0.388 5.388 18 C 0.065 3.935 19 C -0.168 4.168 20 C -0.149 4.149 21 C -0.136 4.136 22 C -0.157 4.157 23 C -0.132 4.132 24 C 0.021 3.979 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.124 0.876 30 H 0.116 0.884 31 H 0.098 0.902 32 H 0.246 0.754 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.146 0.854 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.051 0.949 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.531 -21.140 2.893 22.043 hybrid contribution 0.356 1.410 -0.107 1.458 sum -5.175 -19.731 2.787 20.587 Atomic orbital electron populations 1.70102 1.07498 1.27290 1.50522 1.25930 0.95552 1.03041 0.94592 0.85596 0.78231 0.78643 0.79110 1.19228 1.21552 1.19155 1.21506 0.93322 0.91496 1.51261 0.91847 1.18915 0.93082 0.93856 0.92226 0.99689 1.21503 0.97615 0.94133 1.00960 1.21904 0.98961 0.98287 0.97150 1.21860 0.93504 0.86587 0.99244 1.47688 1.04036 1.09005 1.75578 1.16233 0.82481 0.83857 0.78060 1.90873 1.63114 1.39131 1.59282 1.45123 1.07459 1.06030 1.80202 1.19664 0.79066 0.93690 1.01077 1.21897 1.04029 0.93433 0.97472 1.23551 0.96654 0.96352 0.98329 1.21424 1.02066 0.93647 0.96468 1.22495 1.02434 0.94863 0.95896 1.21356 1.02152 0.94778 0.94872 1.21580 0.96739 0.81870 0.97710 0.93197 0.92903 0.92374 0.93207 0.87639 0.88428 0.90231 0.75433 0.92416 0.93175 0.85408 0.89544 0.89506 0.90431 0.89558 0.90505 0.91675 0.94873 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.14 11.40 21.45 0.24 -56.90 16 2 C 0.01 0.47 5.31 84.66 0.45 0.92 16 3 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.54 -30.13 8.56 25.60 0.22 -29.91 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 9 C 0.04 1.99 2.25 -11.46 -0.03 1.97 16 10 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 11 C -0.10 -4.06 5.11 30.62 0.16 -3.91 16 12 C -0.12 -3.69 6.08 30.67 0.19 -3.51 16 13 C 0.11 3.20 6.43 86.36 0.56 3.75 16 14 N -0.63 -26.30 2.97 -836.91 -2.49 -28.79 16 15 C 0.69 30.20 8.29 179.06 1.49 31.68 16 16 O -0.64 -35.29 15.78 -4.01 -0.06 -35.35 16 17 N -0.73 -22.83 5.46 -482.27 -2.63 -25.46 16 18 C 0.19 5.40 6.11 85.63 0.52 5.93 16 19 C -0.17 -3.39 5.52 -15.87 -0.09 -3.48 16 20 C -0.13 -2.14 10.58 26.26 0.28 -1.87 16 21 C -0.10 -1.15 6.81 30.53 0.21 -0.95 16 22 C -0.12 -1.40 7.20 31.77 0.23 -1.18 16 23 C -0.09 -1.59 6.77 30.59 0.21 -1.38 16 24 C 0.14 7.47 5.39 86.36 0.47 7.94 16 25 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 26 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 27 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.10 2.10 5.57 -2.39 -0.01 2.09 16 31 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.41 9.91 5.92 -92.71 -0.55 9.36 16 33 H 0.06 1.77 8.12 -2.38 -0.02 1.75 16 34 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 36 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.07 4.59 5.17 -2.39 -0.01 4.58 16 Total: -1.00 -75.37 339.76 2.37 -73.00 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 0.44 Total: 20.45 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 4.85 Total: 6.01 kcal Atomic # 7 Polarization: -106.27 SS G_CDS: -4.88 Total: -111.15 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.06 Total: -35.35 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -75.37 2.37 -73.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595819188.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.268 kcal (2) G-P(sol) polarization free energy of solvation -75.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds