Wall clock time and date at job start Mon Mar 30 2020 23:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99792 * 2 1 4 4 H 1.48497 * 109.47362 * 275.00155 * 3 2 1 5 5 H 1.48501 * 109.47402 * 35.00329 * 3 2 1 6 6 H 1.48506 * 109.47215 * 155.00074 * 3 2 1 7 7 C 1.37875 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99699 * 175.11866 * 7 2 1 9 9 C 1.50694 * 120.00124 * 355.11985 * 7 2 1 10 10 H 1.09000 * 109.52998 * 305.32407 * 9 7 2 11 11 C 1.53046 * 109.49995 * 185.23636 * 9 7 2 12 12 C 1.53038 * 109.54057 * 178.68227 * 11 9 7 13 13 C 1.52761 * 109.38023 * 61.24332 * 12 11 9 14 14 N 1.46925 * 109.00973 * 305.58402 * 13 12 11 15 15 C 1.34773 * 120.63594 * 233.58483 * 14 13 12 16 16 O 1.21588 * 120.00593 * 184.74787 * 15 14 13 17 17 N 1.34783 * 119.99735 * 4.74800 * 15 14 13 18 18 C 1.46496 * 120.00102 * 174.89140 * 17 15 14 19 19 C 1.50700 * 109.47426 * 179.97438 * 18 17 15 20 20 C 1.30524 * 124.44493 * 94.69936 * 19 18 17 21 21 C 1.51103 * 111.10291 * 179.88335 * 20 19 18 22 22 C 1.54641 * 104.78012 * 343.93244 * 21 20 19 23 23 C 1.51107 * 124.44763 * 275.00320 * 19 18 17 24 24 C 1.46931 * 118.73740 * 53.31404 * 14 13 12 25 25 H 0.97002 * 120.00185 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.45843 * 298.71015 * 11 9 7 27 27 H 1.09006 * 109.45136 * 58.67843 * 11 9 7 28 28 H 1.08991 * 109.49840 * 181.32179 * 12 11 9 29 29 H 1.09003 * 109.49889 * 301.38479 * 12 11 9 30 30 H 1.09007 * 109.50819 * 185.70674 * 13 12 11 31 31 H 1.08994 * 109.43336 * 65.42616 * 13 12 11 32 32 H 0.96998 * 120.00038 * 354.61652 * 17 15 14 33 33 H 1.08998 * 109.47301 * 300.00463 * 18 17 15 34 34 H 1.09005 * 109.47011 * 60.00074 * 18 17 15 35 35 H 1.07994 * 124.44784 * 359.97438 * 20 19 18 36 36 H 1.08996 * 110.52865 * 225.02014 * 21 20 19 37 37 H 1.09001 * 110.19762 * 102.67289 * 21 20 19 38 38 H 1.08996 * 111.03402 * 266.40708 * 22 21 20 39 39 H 1.08996 * 111.07096 * 142.48516 * 22 21 20 40 40 H 1.08997 * 110.38171 * 315.22340 * 23 19 18 41 41 H 1.08996 * 110.38674 * 77.48351 * 23 19 18 42 42 H 1.09001 * 109.58430 * 66.42548 * 24 14 13 43 43 H 1.09000 * 109.58439 * 186.85347 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3909 2.1075 -1.3947 5 1 1.5034 2.6198 0.8031 6 1 3.5956 1.4120 0.5917 7 6 2.0046 -1.1940 -0.0005 8 1 3.0817 -1.1957 -0.0801 9 6 1.2552 -2.4968 0.1099 10 1 0.6223 -2.4790 0.9971 11 6 2.2528 -3.6525 0.2171 12 6 1.4928 -4.9729 0.3623 13 6 0.6244 -5.1966 -0.8743 14 7 -0.2370 -4.0229 -1.0729 15 6 -1.5723 -4.1630 -1.1901 16 8 -2.2654 -3.1958 -1.4401 17 7 -2.1393 -5.3752 -1.0302 18 6 -3.5980 -5.5094 -1.0462 19 6 -3.9717 -6.9559 -0.8487 20 6 -4.2657 -7.4916 0.3046 21 6 -4.5970 -8.9583 0.1546 22 6 -4.8567 -9.1514 -1.3576 23 6 -4.0487 -7.9781 -1.9590 24 6 0.3845 -2.6930 -1.1352 25 1 -0.4850 0.8400 0.0004 26 1 2.8689 -3.6849 -0.6815 27 1 2.8898 -3.5025 1.0889 28 1 2.2039 -5.7928 0.4622 29 1 0.8582 -4.9319 1.2476 30 1 0.0065 -6.0829 -0.7298 31 1 1.2636 -5.3325 -1.7466 32 1 -1.5815 -6.1593 -0.9085 33 1 -4.0269 -4.9101 -0.2432 34 1 -3.9843 -5.1624 -2.0046 35 1 -4.2728 -6.9566 1.2426 36 1 -5.4893 -9.2091 0.7281 37 1 -3.7537 -9.5694 0.4760 38 1 -5.9176 -9.0545 -1.5879 39 1 -4.4697 -10.1102 -1.7023 40 1 -4.5682 -7.5624 -2.8223 41 1 -3.0490 -8.3084 -2.2411 42 1 1.0039 -2.6207 -2.0293 43 1 -0.3914 -1.9280 -1.1628 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595819189.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:54 Heat of formation + Delta-G solvation = -20.927267 kcal Electronic energy + Delta-G solvation = -21992.774514 eV Core-core repulsion = 18844.655882 eV Total energy + Delta-G solvation = -3148.118632 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.77669 -38.75990 -36.79196 -34.28796 -33.22096 -31.72135 -30.09457 -29.48679 -28.54784 -25.52531 -24.98480 -23.65341 -21.78056 -21.08859 -20.03911 -19.02564 -18.20503 -17.42142 -16.24617 -15.95547 -15.57117 -15.14568 -14.92300 -14.51721 -13.74870 -13.68753 -13.57932 -13.29208 -12.93189 -12.63980 -12.55846 -12.18971 -11.96135 -11.89761 -11.70062 -11.40953 -11.28065 -11.25166 -10.99075 -10.85105 -10.49240 -10.36605 -10.22060 -9.82818 -9.48166 -9.05323 -8.98526 -8.84559 -8.67123 -8.42214 -7.59191 -5.95874 -4.04147 1.87739 3.32928 3.40721 3.42930 3.46312 3.91128 4.36551 4.39668 4.44178 4.52987 4.78852 4.93849 5.19980 5.31577 5.34487 5.39401 5.49888 5.53125 5.57001 5.61912 5.64930 5.76527 5.82881 5.87712 5.97624 6.01444 6.19066 6.34695 6.39970 6.62696 6.69400 6.71046 6.84537 6.88425 7.01814 7.10578 7.38390 7.56065 7.77726 7.96187 8.08795 8.44407 8.64325 9.00176 9.30831 9.61313 11.09857 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031239 B = 0.003752 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.094023 B = 7460.890121 C = 7958.681534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.039 3.961 10 H 0.030 0.970 11 C -0.109 4.109 12 C -0.134 4.134 13 C 0.116 3.884 14 N -0.623 5.623 15 C 0.700 3.300 16 O -0.585 6.585 17 N -0.753 5.753 18 C 0.188 3.812 19 C -0.151 4.151 20 C -0.145 4.145 21 C -0.101 4.101 22 C -0.125 4.125 23 C -0.092 4.092 24 C 0.131 3.869 25 H 0.263 0.737 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.391 0.609 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.126 0.874 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.039 0.961 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.082 -19.028 -1.288 20.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.020 3.980 10 H 0.048 0.952 11 C -0.147 4.147 12 C -0.172 4.172 13 C -0.008 4.008 14 N -0.359 5.359 15 C 0.402 3.598 16 O -0.463 6.463 17 N -0.413 5.413 18 C 0.064 3.936 19 C -0.152 4.152 20 C -0.164 4.164 21 C -0.138 4.138 22 C -0.162 4.162 23 C -0.129 4.129 24 C 0.011 3.989 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.226 0.774 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.144 0.856 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.057 0.943 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.758 -18.141 -1.479 19.416 hybrid contribution 0.769 0.493 0.145 0.925 sum -5.989 -17.648 -1.334 18.684 Atomic orbital electron populations 1.69933 1.05748 1.26783 1.49060 1.25063 0.94856 0.99247 0.94857 0.86593 0.79872 0.83641 0.77965 1.20740 1.21195 1.19914 1.21067 0.93131 0.90183 1.51650 0.92405 1.19003 0.92617 0.92061 0.94309 0.95169 1.21616 0.98562 0.94108 1.00432 1.21876 0.98649 0.99133 0.97566 1.21391 0.93307 0.87811 0.98269 1.47790 1.03626 1.09444 1.75086 1.15960 0.82506 0.82911 0.78437 1.90916 1.61549 1.38126 1.55662 1.45337 1.06549 1.08626 1.80763 1.19676 0.80456 0.91067 1.02386 1.22121 1.01912 0.95211 0.95948 1.23296 0.99345 0.95887 0.97854 1.21369 1.01483 0.94260 0.96676 1.22444 1.00399 0.98278 0.95125 1.21288 1.00544 0.93863 0.97218 1.22186 0.98118 0.80212 0.98427 0.92712 0.93251 0.93042 0.92356 0.92230 0.92211 0.92216 0.77356 0.91316 0.91324 0.85598 0.91104 0.90595 0.91107 0.91007 0.91019 0.90713 0.94279 0.86438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.06 11.61 55.43 0.64 -25.42 16 2 C 0.06 1.77 5.36 -17.82 -0.10 1.67 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.30 8.49 -34.44 -0.29 -14.59 16 8 H 0.06 1.55 7.75 -52.48 -0.41 1.14 16 9 C 0.04 0.99 2.20 -91.65 -0.20 0.79 16 10 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 11 C -0.11 -2.20 5.11 -26.69 -0.14 -2.33 16 12 C -0.13 -2.18 6.06 -26.83 -0.16 -2.34 16 13 C 0.12 1.84 6.40 -3.93 -0.03 1.82 16 14 N -0.62 -12.91 2.98 -178.75 -0.53 -13.44 16 15 C 0.70 14.83 8.30 -86.92 -0.72 14.11 16 16 O -0.59 -15.13 15.79 5.29 0.08 -15.04 16 17 N -0.75 -11.90 5.46 -66.41 -0.36 -12.27 16 18 C 0.19 2.65 6.11 -5.20 -0.03 2.62 16 19 C -0.15 -1.63 5.53 -100.73 -0.56 -2.19 16 20 C -0.14 -1.41 10.59 -35.70 -0.38 -1.79 16 21 C -0.10 -0.78 6.81 -26.82 -0.18 -0.96 16 22 C -0.12 -0.92 7.19 -25.01 -0.18 -1.10 16 23 C -0.09 -0.82 6.76 -26.83 -0.18 -1.01 16 24 C 0.13 3.26 5.46 -3.70 -0.02 3.24 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.76 5.57 -51.93 -0.29 0.47 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.39 5.16 5.92 -40.82 -0.24 4.92 16 33 H 0.07 1.05 8.12 -51.93 -0.42 0.62 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.12 3.44 5.38 -51.93 -0.28 3.16 16 LS Contribution 340.16 15.07 5.13 5.13 Total: -1.00 -32.13 340.16 -10.34 -42.47 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -7.12 Total: 4.16 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -3.16 Total: -2.06 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.25 Total: -51.13 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.08 Total: -15.04 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.13 -10.34 -42.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595819189.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.546 kcal (2) G-P(sol) polarization free energy of solvation -32.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds