Wall clock time and date at job start Mon Mar 30 2020 23:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 119.99792 * 2 1 4 4 H 1.48497 * 109.47362 * 275.00155 * 3 2 1 5 5 H 1.48501 * 109.47402 * 35.00329 * 3 2 1 6 6 H 1.48506 * 109.47215 * 155.00074 * 3 2 1 7 7 C 1.37875 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99699 * 175.11866 * 7 2 1 9 9 C 1.50694 * 120.00124 * 355.11985 * 7 2 1 10 10 H 1.09000 * 109.52998 * 305.32407 * 9 7 2 11 11 C 1.53046 * 109.49995 * 185.23636 * 9 7 2 12 12 C 1.53038 * 109.54057 * 178.68227 * 11 9 7 13 13 C 1.52761 * 109.38023 * 61.24332 * 12 11 9 14 14 N 1.46925 * 109.00973 * 305.58402 * 13 12 11 15 15 C 1.34773 * 120.63594 * 233.58483 * 14 13 12 16 16 O 1.21588 * 120.00593 * 184.74787 * 15 14 13 17 17 N 1.34783 * 119.99735 * 4.74800 * 15 14 13 18 18 C 1.46496 * 120.00102 * 174.89140 * 17 15 14 19 19 C 1.50700 * 109.47426 * 179.97438 * 18 17 15 20 20 C 1.30524 * 124.44493 * 94.69936 * 19 18 17 21 21 C 1.51103 * 111.10291 * 179.88335 * 20 19 18 22 22 C 1.54641 * 104.78012 * 343.93244 * 21 20 19 23 23 C 1.51107 * 124.44763 * 275.00320 * 19 18 17 24 24 C 1.46931 * 118.73740 * 53.31404 * 14 13 12 25 25 H 0.97002 * 120.00185 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.45843 * 298.71015 * 11 9 7 27 27 H 1.09006 * 109.45136 * 58.67843 * 11 9 7 28 28 H 1.08991 * 109.49840 * 181.32179 * 12 11 9 29 29 H 1.09003 * 109.49889 * 301.38479 * 12 11 9 30 30 H 1.09007 * 109.50819 * 185.70674 * 13 12 11 31 31 H 1.08994 * 109.43336 * 65.42616 * 13 12 11 32 32 H 0.96998 * 120.00038 * 354.61652 * 17 15 14 33 33 H 1.08998 * 109.47301 * 300.00463 * 18 17 15 34 34 H 1.09005 * 109.47011 * 60.00074 * 18 17 15 35 35 H 1.07994 * 124.44784 * 359.97438 * 20 19 18 36 36 H 1.08996 * 110.52865 * 225.02014 * 21 20 19 37 37 H 1.09001 * 110.19762 * 102.67289 * 21 20 19 38 38 H 1.08996 * 111.03402 * 266.40708 * 22 21 20 39 39 H 1.08996 * 111.07096 * 142.48516 * 22 21 20 40 40 H 1.08997 * 110.38171 * 315.22340 * 23 19 18 41 41 H 1.08996 * 110.38674 * 77.48351 * 23 19 18 42 42 H 1.09001 * 109.58430 * 66.42548 * 24 14 13 43 43 H 1.09000 * 109.58439 * 186.85347 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3909 2.1075 -1.3947 5 1 1.5034 2.6198 0.8031 6 1 3.5956 1.4120 0.5917 7 6 2.0046 -1.1940 -0.0005 8 1 3.0817 -1.1957 -0.0801 9 6 1.2552 -2.4968 0.1099 10 1 0.6223 -2.4790 0.9971 11 6 2.2528 -3.6525 0.2171 12 6 1.4928 -4.9729 0.3623 13 6 0.6244 -5.1966 -0.8743 14 7 -0.2370 -4.0229 -1.0729 15 6 -1.5723 -4.1630 -1.1901 16 8 -2.2654 -3.1958 -1.4401 17 7 -2.1393 -5.3752 -1.0302 18 6 -3.5980 -5.5094 -1.0462 19 6 -3.9717 -6.9559 -0.8487 20 6 -4.2657 -7.4916 0.3046 21 6 -4.5970 -8.9583 0.1546 22 6 -4.8567 -9.1514 -1.3576 23 6 -4.0487 -7.9781 -1.9590 24 6 0.3845 -2.6930 -1.1352 25 1 -0.4850 0.8400 0.0004 26 1 2.8689 -3.6849 -0.6815 27 1 2.8898 -3.5025 1.0889 28 1 2.2039 -5.7928 0.4622 29 1 0.8582 -4.9319 1.2476 30 1 0.0065 -6.0829 -0.7298 31 1 1.2636 -5.3325 -1.7466 32 1 -1.5815 -6.1593 -0.9085 33 1 -4.0269 -4.9101 -0.2432 34 1 -3.9843 -5.1624 -2.0046 35 1 -4.2728 -6.9566 1.2426 36 1 -5.4893 -9.2091 0.7281 37 1 -3.7537 -9.5694 0.4760 38 1 -5.9176 -9.0545 -1.5879 39 1 -4.4697 -10.1102 -1.7023 40 1 -4.5682 -7.5624 -2.8223 41 1 -3.0490 -8.3084 -2.2411 42 1 1.0039 -2.6207 -2.0293 43 1 -0.3914 -1.9280 -1.1628 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595819189.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:54 Heat of formation + Delta-G solvation = -40.584615 kcal Electronic energy + Delta-G solvation = -21993.626921 eV Core-core repulsion = 18844.655882 eV Total energy + Delta-G solvation = -3148.971039 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.33327 -39.64016 -38.43642 -35.79912 -35.09551 -33.42856 -31.65439 -30.71092 -29.25535 -27.14010 -26.59227 -25.12956 -23.43758 -21.80911 -21.62770 -20.53774 -19.48401 -18.71288 -18.19243 -17.33126 -16.65383 -16.52636 -16.22905 -16.15067 -15.21770 -15.17060 -15.10620 -14.72680 -14.37453 -14.25926 -13.76474 -13.55803 -13.51156 -12.91035 -12.75357 -12.68270 -12.54707 -12.32859 -12.22686 -12.14002 -12.00940 -11.90559 -11.83254 -11.62988 -11.25041 -10.93570 -10.85136 -10.54203 -10.18205 -9.74805 -9.26622 -8.10529 -6.27086 0.98650 1.41217 1.41479 1.53240 1.96623 2.24681 2.42762 3.10299 3.20857 3.58376 3.67698 4.03389 4.16528 4.18628 4.24431 4.28330 4.41956 4.50906 4.59648 4.63733 4.74203 4.81246 4.85038 4.89213 4.91447 5.04648 5.06124 5.10914 5.23344 5.26004 5.28123 5.32279 5.40718 5.50278 5.57349 5.60250 5.64809 5.88498 5.90070 5.96929 6.16287 6.36109 6.86891 7.12517 7.42962 7.66438 8.93665 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031239 B = 0.003752 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.094023 B = 7460.890121 C = 7958.681534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.008 3.992 3 Si 0.959 3.041 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.261 1.261 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.039 3.961 10 H -0.013 1.013 11 C -0.104 4.104 12 C -0.126 4.126 13 C 0.110 3.890 14 N -0.627 5.627 15 C 0.692 3.308 16 O -0.642 6.642 17 N -0.729 5.729 18 C 0.189 3.811 19 C -0.166 4.166 20 C -0.134 4.134 21 C -0.099 4.099 22 C -0.120 4.120 23 C -0.091 4.091 24 C 0.146 3.854 25 H 0.259 0.741 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.106 0.894 29 H 0.048 0.952 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.407 0.593 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.123 0.877 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.081 0.919 42 H 0.035 0.965 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.854 -22.186 -1.184 22.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.192 4.192 3 Si 0.784 3.216 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.574 4.574 8 H 0.082 0.918 9 C 0.019 3.981 10 H 0.005 0.995 11 C -0.142 4.142 12 C -0.164 4.164 13 C -0.012 4.012 14 N -0.363 5.363 15 C 0.394 3.606 16 O -0.524 6.524 17 N -0.388 5.388 18 C 0.065 3.935 19 C -0.167 4.167 20 C -0.153 4.153 21 C -0.136 4.136 22 C -0.157 4.157 23 C -0.129 4.129 24 C 0.023 3.977 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.124 0.876 29 H 0.067 0.933 30 H 0.116 0.884 31 H 0.098 0.902 32 H 0.246 0.754 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.141 0.859 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.053 0.947 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.501 -21.387 -1.362 22.125 hybrid contribution 0.358 1.442 0.152 1.493 sum -5.142 -19.945 -1.211 20.633 Atomic orbital electron populations 1.70136 1.07545 1.27233 1.50527 1.25939 0.95540 1.03084 0.94617 0.85529 0.78908 0.79097 0.78042 1.20240 1.21311 1.18471 1.21523 0.93575 0.91518 1.50778 0.91841 1.18929 0.93079 0.93747 0.92327 0.99505 1.21506 0.97620 0.94166 1.00919 1.21835 0.99030 0.98329 0.97169 1.21771 0.93493 0.86849 0.99047 1.47695 1.04129 1.09550 1.74921 1.16239 0.82478 0.83697 0.78222 1.90872 1.62932 1.40494 1.58133 1.45130 1.07492 1.07222 1.78994 1.19685 0.79082 0.93588 1.01121 1.21929 1.03835 0.93479 0.97436 1.23554 0.97208 0.97292 0.97267 1.21425 1.02520 0.92434 0.97219 1.22457 1.00414 0.98264 0.94576 1.21316 1.01274 0.93833 0.96431 1.21590 0.96512 0.81526 0.98093 0.93216 0.92340 0.92902 0.87596 0.93289 0.88433 0.90158 0.75414 0.93150 0.92464 0.85911 0.89891 0.89256 0.90821 0.89242 0.91424 0.90070 0.94666 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.19 11.61 21.45 0.25 -56.94 16 2 C 0.01 0.44 5.36 84.65 0.45 0.89 16 3 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.54 -29.97 8.49 25.60 0.22 -29.75 16 8 H 0.06 3.39 7.75 -2.91 -0.02 3.37 16 9 C 0.04 1.99 2.20 -11.46 -0.03 1.96 16 10 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 11 C -0.10 -4.05 5.11 30.62 0.16 -3.89 16 12 C -0.13 -3.69 6.06 30.53 0.19 -3.51 16 13 C 0.11 3.18 6.40 86.22 0.55 3.73 16 14 N -0.63 -26.16 2.98 -837.72 -2.49 -28.65 16 15 C 0.69 30.10 8.30 179.05 1.49 31.58 16 16 O -0.64 -35.26 15.79 -3.99 -0.06 -35.32 16 17 N -0.73 -22.72 5.46 -482.29 -2.63 -25.36 16 18 C 0.19 5.40 6.11 85.63 0.52 5.93 16 19 C -0.17 -3.36 5.53 -15.87 -0.09 -3.45 16 20 C -0.13 -2.35 10.59 26.27 0.28 -2.07 16 21 C -0.10 -1.20 6.81 30.53 0.21 -0.99 16 22 C -0.12 -1.38 7.19 31.71 0.23 -1.15 16 23 C -0.09 -1.43 6.76 30.53 0.21 -1.23 16 24 C 0.15 7.53 5.46 86.36 0.47 8.00 16 25 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 26 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.10 2.07 5.57 -2.38 -0.01 2.06 16 31 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.41 9.79 5.92 -92.71 -0.55 9.24 16 33 H 0.05 1.61 8.12 -2.39 -0.02 1.59 16 34 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 35 H 0.12 2.20 8.06 -2.91 -0.02 2.18 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.07 4.22 5.38 -2.39 -0.01 4.21 16 Total: -1.00 -75.57 340.16 2.37 -73.19 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.44 Total: 19.96 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 4.85 Total: 6.06 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -4.88 Total: -110.95 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -0.06 Total: -35.32 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -75.57 2.37 -73.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595819189.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.609 kcal (2) G-P(sol) polarization free energy of solvation -75.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds