Wall clock time and date at job start Tue Mar 31 2020 00:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86806 * 120.00132 * 2 1 4 4 H 1.48493 * 109.47063 * 240.00518 * 3 2 1 5 5 H 1.48499 * 109.46697 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47001 * 120.00157 * 3 2 1 7 7 C 1.37883 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99939 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99604 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.82043 * 61.88156 * 9 7 2 11 11 C 1.54895 * 110.75384 * 298.54665 * 9 7 2 12 12 C 1.54265 * 104.19375 * 203.74879 * 11 9 7 13 13 C 1.53874 * 106.60279 * 23.60772 * 12 11 9 14 14 H 1.09001 * 110.03319 * 240.67049 * 13 12 11 15 15 N 1.46498 * 110.03482 * 119.28823 * 13 12 11 16 16 C 1.34774 * 120.00211 * 86.45413 * 15 13 12 17 17 O 1.21586 * 120.00048 * 0.02562 * 16 15 13 18 18 N 1.34773 * 119.99940 * 180.02562 * 16 15 13 19 19 C 1.46506 * 119.99969 * 180.02562 * 18 16 15 20 20 C 1.52996 * 119.29643 * 250.24427 * 19 18 16 21 21 C 1.52995 * 60.37823 * 248.69172 * 20 19 18 22 22 H 1.08997 * 119.30331 * 111.30467 * 21 20 19 23 23 C 1.54267 * 118.19754 * 266.38398 * 21 20 19 24 24 C 1.54890 * 104.19647 * 87.79022 * 23 21 20 25 25 C 1.54269 * 117.40984 * 45.89477 * 19 18 16 26 26 C 1.54264 * 106.59652 * 0.02562 * 13 12 11 27 27 H 0.97002 * 120.00272 * 359.97438 * 1 2 3 28 28 H 1.08995 * 110.48674 * 85.06719 * 11 9 7 29 29 H 1.08998 * 110.59858 * 322.47705 * 11 9 7 30 30 H 1.09005 * 110.03135 * 264.32570 * 12 11 9 31 31 H 1.09000 * 110.07587 * 142.91886 * 12 11 9 32 32 H 0.97004 * 119.99747 * 266.46062 * 15 13 12 33 33 H 0.97005 * 120.00161 * 359.72198 * 18 16 15 34 34 H 1.09002 * 117.46246 * 356.28989 * 20 19 18 35 35 H 1.09001 * 117.46188 * 141.09497 * 20 19 18 36 36 H 1.09003 * 110.48716 * 206.46260 * 23 21 20 37 37 H 1.08998 * 110.48703 * 329.10987 * 23 21 20 38 38 H 1.09001 * 110.75834 * 80.36819 * 24 23 21 39 39 H 1.08997 * 110.75986 * 203.55847 * 24 23 21 40 40 H 1.09001 * 110.48534 * 235.04615 * 25 19 18 41 41 H 1.08992 * 110.48707 * 357.69213 * 25 19 18 42 42 H 1.09007 * 110.48332 * 95.06756 * 26 13 12 43 43 H 1.08999 * 110.49157 * 217.71252 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6411 -2.5944 -0.8989 11 6 0.3776 -2.6287 1.2721 12 6 0.1831 -4.1493 1.4443 13 6 1.3581 -4.8278 0.7185 14 1 0.9840 -5.4664 -0.0817 15 7 2.1435 -5.6209 1.6674 16 6 1.7895 -6.8929 1.9377 17 8 0.8185 -7.3824 1.3937 18 7 2.5118 -7.6223 2.8110 19 6 2.1273 -9.0052 3.1044 20 6 1.5485 -9.3457 4.4791 21 6 2.9334 -9.8675 4.0914 22 1 3.8135 -9.4740 4.6000 23 6 3.0337 -11.2746 3.4670 24 6 2.8424 -11.0313 1.9494 25 6 1.7781 -9.9143 1.9080 26 6 2.2260 -3.6958 0.1312 27 1 -0.4851 0.8400 0.0004 28 1 -0.5833 -2.1351 1.1272 29 1 0.8940 -2.2100 2.1359 30 1 -0.7612 -4.4581 0.9957 31 1 0.1967 -4.4108 2.5024 32 1 2.9183 -5.2304 2.1012 33 1 3.2888 -7.2330 3.2420 34 1 1.5016 -8.5449 5.2172 35 1 0.7319 -10.0668 4.5162 36 1 4.0136 -11.7100 3.6629 37 1 2.2445 -11.9201 3.8524 38 1 3.7702 -10.6856 1.4935 39 1 2.4842 -11.9345 1.4554 40 1 0.7861 -10.3478 2.0350 41 1 1.8343 -9.3546 0.9745 42 1 3.0429 -3.4501 0.8098 43 1 2.6139 -3.9806 -0.8469 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596613897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:57 Heat of formation + Delta-G solvation = -20.595397 kcal Electronic energy + Delta-G solvation = -21730.882236 eV Core-core repulsion = 18582.777995 eV Total energy + Delta-G solvation = -3148.104242 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46855 -39.00468 -36.98264 -33.77943 -33.37847 -31.90846 -31.28184 -28.16893 -28.01780 -26.73255 -23.87745 -22.85701 -21.68477 -20.48682 -19.82413 -19.25659 -19.10889 -17.87896 -16.82316 -16.34445 -15.51491 -15.05948 -14.77488 -14.54074 -14.12047 -13.94236 -13.71803 -13.36578 -13.11838 -12.61175 -12.30354 -12.15396 -11.73912 -11.34831 -11.21932 -11.14818 -11.06439 -10.96167 -10.88152 -10.79476 -10.59240 -10.27411 -10.13545 -9.89902 -9.65223 -9.48704 -9.19548 -8.86179 -8.78285 -8.41486 -8.33670 -5.99447 -4.03169 2.79632 3.26414 3.31713 3.37034 3.38817 3.59102 4.24554 4.37296 4.44260 4.47106 4.65915 4.90346 5.11781 5.21264 5.32564 5.36790 5.41803 5.57146 5.60396 5.63724 5.65011 5.72742 5.82870 5.89045 5.97041 6.13223 6.16635 6.36927 6.41453 6.61490 6.67818 6.71207 6.78821 6.93769 7.01101 7.11625 7.31278 7.42146 7.74061 7.90764 8.04554 8.27685 8.44191 8.88674 8.98658 9.60805 11.09568 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.045339 B = 0.003077 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.419355 B = 9098.392544 C = 9169.338561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.052 3.948 10 H 0.032 0.968 11 C -0.100 4.100 12 C -0.135 4.135 13 C 0.157 3.843 14 H 0.079 0.921 15 N -0.734 5.734 16 C 0.704 3.296 17 O -0.586 6.586 18 N -0.718 5.718 19 C 0.121 3.879 20 C -0.158 4.158 21 C -0.168 4.168 22 H 0.111 0.889 23 C -0.094 4.094 24 C -0.126 4.126 25 C -0.083 4.083 26 C -0.121 4.121 27 H 0.260 0.740 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.392 0.608 33 H 0.395 0.605 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.060 0.940 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.549 -19.448 8.064 22.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.554 4.554 8 H 0.073 0.927 9 C 0.033 3.967 10 H 0.050 0.950 11 C -0.138 4.138 12 C -0.174 4.174 13 C 0.053 3.947 14 H 0.097 0.903 15 N -0.388 5.388 16 C 0.404 3.596 17 O -0.464 6.464 18 N -0.372 5.372 19 C 0.033 3.967 20 C -0.197 4.197 21 C -0.187 4.187 22 H 0.129 0.871 23 C -0.131 4.131 24 C -0.163 4.163 25 C -0.121 4.121 26 C -0.159 4.159 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.225 0.775 33 H 0.229 0.771 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.476 -19.737 7.502 21.813 hybrid contribution 1.230 1.471 0.667 2.030 sum 6.706 -18.266 8.169 21.104 Atomic orbital electron populations 1.69948 1.05864 1.26542 1.50269 1.24976 0.94830 0.98977 0.95101 0.86705 0.79617 0.83388 0.78524 1.20329 1.21361 1.20377 1.21057 0.92689 0.90473 1.51140 0.92738 1.19547 0.91986 0.90966 0.94156 0.94978 1.22301 1.01616 0.90454 0.99451 1.22665 0.97188 0.98683 0.98837 1.21729 0.91678 0.91411 0.89855 0.90309 1.45563 1.33369 1.11504 1.48354 1.15972 0.82633 0.81215 0.79769 1.90891 1.28815 1.71471 1.55216 1.44362 1.32557 1.12148 1.48115 1.21220 1.03395 0.81759 0.90367 1.23581 0.95614 1.02664 0.97867 1.23716 0.96020 0.95938 1.03056 0.87114 1.21955 1.01977 0.94279 0.94938 1.22634 0.99395 0.98511 0.95780 1.21887 0.98645 0.94305 0.97273 1.22767 0.98747 0.95483 0.98903 0.93006 0.91303 0.93616 0.92643 0.93317 0.77457 0.77135 0.88271 0.88433 0.91150 0.91122 0.91478 0.91029 0.90883 0.89645 0.92164 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.36 12.02 55.43 0.67 -24.69 16 2 C 0.06 1.73 5.33 -17.82 -0.10 1.63 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -13.85 8.54 -34.44 -0.29 -14.15 16 8 H 0.05 1.43 7.78 -52.49 -0.41 1.02 16 9 C 0.05 1.27 2.83 -89.76 -0.25 1.02 16 10 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 11 C -0.10 -2.33 5.56 -25.07 -0.14 -2.47 16 12 C -0.13 -2.71 6.59 -25.61 -0.17 -2.88 16 13 C 0.16 2.92 3.23 -66.81 -0.22 2.71 16 14 H 0.08 1.55 7.60 -51.93 -0.39 1.16 16 15 N -0.73 -11.40 5.00 -57.58 -0.29 -11.69 16 16 C 0.70 11.31 8.26 -86.92 -0.72 10.59 16 17 O -0.59 -11.58 14.19 5.29 0.08 -11.50 16 18 N -0.72 -8.76 5.67 -51.37 -0.29 -9.05 16 19 C 0.12 1.38 2.99 -130.70 -0.39 0.99 16 20 C -0.16 -1.55 10.06 -26.74 -0.27 -1.81 16 21 C -0.17 -1.43 6.94 -89.51 -0.62 -2.05 16 22 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 23 C -0.09 -0.70 6.63 -25.07 -0.17 -0.86 16 24 C -0.13 -1.08 6.88 -25.03 -0.17 -1.25 16 25 C -0.08 -0.97 5.62 -25.37 -0.14 -1.11 16 26 C -0.12 -2.40 5.94 -25.06 -0.15 -2.55 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.07 1.76 7.37 -51.93 -0.38 1.38 16 29 H 0.04 1.09 8.04 -51.93 -0.42 0.67 16 30 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.05 0.94 7.92 -51.93 -0.41 0.53 16 32 H 0.39 5.10 8.35 -40.82 -0.34 4.76 16 33 H 0.39 3.72 8.84 -40.82 -0.36 3.36 16 34 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 1.23 6.68 -51.93 -0.35 0.88 16 42 H 0.06 1.14 7.63 -51.92 -0.40 0.75 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 341.24 15.07 5.14 5.14 Total: -1.00 -30.59 341.24 -10.76 -41.35 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.25 Total: 6.60 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -3.80 Total: -12.19 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.09 Total: -45.43 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.59 -10.76 -41.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596613897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.750 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds