Wall clock time and date at job start Tue Mar 31 2020 00:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86806 * 120.00132 * 2 1 4 4 H 1.48493 * 109.47063 * 240.00518 * 3 2 1 5 5 H 1.48499 * 109.46697 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47001 * 120.00157 * 3 2 1 7 7 C 1.37883 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99939 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99604 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.82043 * 61.88156 * 9 7 2 11 11 C 1.54895 * 110.75384 * 298.54665 * 9 7 2 12 12 C 1.54265 * 104.19375 * 203.74879 * 11 9 7 13 13 C 1.53874 * 106.60279 * 23.60772 * 12 11 9 14 14 H 1.09001 * 110.03319 * 240.67049 * 13 12 11 15 15 N 1.46498 * 110.03482 * 119.28823 * 13 12 11 16 16 C 1.34774 * 120.00211 * 86.45413 * 15 13 12 17 17 O 1.21586 * 120.00048 * 0.02562 * 16 15 13 18 18 N 1.34773 * 119.99940 * 180.02562 * 16 15 13 19 19 C 1.46506 * 119.99969 * 180.02562 * 18 16 15 20 20 C 1.52996 * 119.29643 * 250.24427 * 19 18 16 21 21 C 1.52995 * 60.37823 * 248.69172 * 20 19 18 22 22 H 1.08997 * 119.30331 * 111.30467 * 21 20 19 23 23 C 1.54267 * 118.19754 * 266.38398 * 21 20 19 24 24 C 1.54890 * 104.19647 * 87.79022 * 23 21 20 25 25 C 1.54269 * 117.40984 * 45.89477 * 19 18 16 26 26 C 1.54264 * 106.59652 * 0.02562 * 13 12 11 27 27 H 0.97002 * 120.00272 * 359.97438 * 1 2 3 28 28 H 1.08995 * 110.48674 * 85.06719 * 11 9 7 29 29 H 1.08998 * 110.59858 * 322.47705 * 11 9 7 30 30 H 1.09005 * 110.03135 * 264.32570 * 12 11 9 31 31 H 1.09000 * 110.07587 * 142.91886 * 12 11 9 32 32 H 0.97004 * 119.99747 * 266.46062 * 15 13 12 33 33 H 0.97005 * 120.00161 * 359.72198 * 18 16 15 34 34 H 1.09002 * 117.46246 * 356.28989 * 20 19 18 35 35 H 1.09001 * 117.46188 * 141.09497 * 20 19 18 36 36 H 1.09003 * 110.48716 * 206.46260 * 23 21 20 37 37 H 1.08998 * 110.48703 * 329.10987 * 23 21 20 38 38 H 1.09001 * 110.75834 * 80.36819 * 24 23 21 39 39 H 1.08997 * 110.75986 * 203.55847 * 24 23 21 40 40 H 1.09001 * 110.48534 * 235.04615 * 25 19 18 41 41 H 1.08992 * 110.48707 * 357.69213 * 25 19 18 42 42 H 1.09007 * 110.48332 * 95.06756 * 26 13 12 43 43 H 1.08999 * 110.49157 * 217.71252 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6411 -2.5944 -0.8989 11 6 0.3776 -2.6287 1.2721 12 6 0.1831 -4.1493 1.4443 13 6 1.3581 -4.8278 0.7185 14 1 0.9840 -5.4664 -0.0817 15 7 2.1435 -5.6209 1.6674 16 6 1.7895 -6.8929 1.9377 17 8 0.8185 -7.3824 1.3937 18 7 2.5118 -7.6223 2.8110 19 6 2.1273 -9.0052 3.1044 20 6 1.5485 -9.3457 4.4791 21 6 2.9334 -9.8675 4.0914 22 1 3.8135 -9.4740 4.6000 23 6 3.0337 -11.2746 3.4670 24 6 2.8424 -11.0313 1.9494 25 6 1.7781 -9.9143 1.9080 26 6 2.2260 -3.6958 0.1312 27 1 -0.4851 0.8400 0.0004 28 1 -0.5833 -2.1351 1.1272 29 1 0.8940 -2.2100 2.1359 30 1 -0.7612 -4.4581 0.9957 31 1 0.1967 -4.4108 2.5024 32 1 2.9183 -5.2304 2.1012 33 1 3.2888 -7.2330 3.2420 34 1 1.5016 -8.5449 5.2172 35 1 0.7319 -10.0668 4.5162 36 1 4.0136 -11.7100 3.6629 37 1 2.2445 -11.9201 3.8524 38 1 3.7702 -10.6856 1.4935 39 1 2.4842 -11.9345 1.4554 40 1 0.7861 -10.3478 2.0350 41 1 1.8343 -9.3546 0.9745 42 1 3.0429 -3.4501 0.8098 43 1 2.6139 -3.9806 -0.8469 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596613897.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:56 Heat of formation + Delta-G solvation = -39.175392 kcal Electronic energy + Delta-G solvation = -21731.687925 eV Core-core repulsion = 18582.777995 eV Total energy + Delta-G solvation = -3148.909931 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.50263 -40.14041 -38.57497 -35.26713 -34.72916 -33.52850 -32.19636 -29.95690 -29.03646 -28.23975 -25.79420 -23.65974 -22.81899 -21.48467 -21.20735 -20.78658 -20.36103 -19.09393 -18.46508 -17.58765 -16.88417 -16.58189 -16.10184 -15.94432 -15.60834 -15.31494 -14.57434 -14.44389 -14.12315 -14.02196 -13.88015 -13.62465 -13.05824 -12.93926 -12.75415 -12.57612 -12.42979 -12.15701 -11.98332 -11.90408 -11.82158 -11.66846 -11.63827 -11.37813 -11.18981 -11.06918 -10.81159 -10.72529 -10.44602 -10.07777 -9.54099 -8.08455 -6.19196 1.44403 1.45453 1.52886 1.67498 2.16095 2.45906 2.68634 3.22137 3.26053 3.53394 3.71474 3.90315 3.94132 4.05780 4.21948 4.26022 4.38427 4.51840 4.62916 4.66252 4.70493 4.78549 4.86256 4.89581 4.93709 5.02798 5.04630 5.08357 5.16862 5.20605 5.25116 5.27788 5.31288 5.42375 5.46157 5.67277 5.69647 5.73298 5.94209 6.00769 6.06589 6.38489 6.91134 7.16568 7.48533 7.66722 8.99800 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.045339 B = 0.003077 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.419355 B = 9098.392544 C = 9169.338561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.530 4.530 8 H 0.060 0.940 9 C 0.041 3.959 10 H 0.000 1.000 11 C -0.088 4.088 12 C -0.124 4.124 13 C 0.172 3.828 14 H 0.067 0.933 15 N -0.725 5.725 16 C 0.701 3.299 17 O -0.627 6.627 18 N -0.701 5.701 19 C 0.083 3.917 20 C -0.161 4.161 21 C -0.138 4.138 22 H 0.130 0.870 23 C -0.091 4.091 24 C -0.119 4.119 25 C -0.086 4.086 26 C -0.105 4.105 27 H 0.259 0.741 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.407 0.593 33 H 0.410 0.590 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.074 0.926 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.940 -20.664 9.646 24.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.215 1.215 6 H -0.194 1.194 7 C -0.568 4.568 8 H 0.078 0.922 9 C 0.022 3.978 10 H 0.018 0.982 11 C -0.127 4.127 12 C -0.163 4.163 13 C 0.066 3.934 14 H 0.086 0.914 15 N -0.381 5.381 16 C 0.402 3.598 17 O -0.507 6.507 18 N -0.355 5.355 19 C -0.005 4.005 20 C -0.200 4.200 21 C -0.157 4.157 22 H 0.148 0.852 23 C -0.129 4.129 24 C -0.157 4.157 25 C -0.124 4.124 26 C -0.143 4.143 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.244 0.756 33 H 0.247 0.753 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.093 0.907 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.928 -20.973 9.125 24.207 hybrid contribution 0.449 1.806 0.163 1.868 sum 8.376 -19.168 9.288 22.887 Atomic orbital electron populations 1.70097 1.07364 1.27184 1.51330 1.25792 0.95612 1.02525 0.94910 0.85671 0.78337 0.79074 0.78918 1.19629 1.21473 1.19364 1.21454 0.93145 0.91601 1.50569 0.92208 1.19531 0.92816 0.92336 0.93135 0.98204 1.22070 0.99619 0.92384 0.98619 1.22532 0.97755 0.96353 0.99613 1.21300 0.91109 0.91010 0.89933 0.91449 1.45240 1.33530 1.11334 1.47949 1.16110 0.82474 0.81204 0.80058 1.90870 1.30782 1.72263 1.56833 1.44172 1.32261 1.12308 1.46791 1.21481 1.06595 0.81381 0.91044 1.23651 0.96883 1.02949 0.96506 1.23871 0.95806 0.95608 1.00379 0.85186 1.22008 1.03520 0.93802 0.93536 1.22596 0.98221 0.97730 0.97112 1.21842 0.99402 0.95156 0.96010 1.22560 0.98073 0.93759 0.99953 0.93205 0.94413 0.94370 0.93343 0.92315 0.75646 0.75309 0.87998 0.88175 0.89046 0.90298 0.91500 0.89941 0.91830 0.93055 0.90701 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.82 12.02 21.45 0.26 -53.56 16 2 C 0.01 0.57 5.33 84.66 0.45 1.02 16 3 Si 0.95 43.14 29.54 68.60 2.03 45.16 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.53 -28.54 8.54 25.60 0.22 -28.32 16 8 H 0.06 3.09 7.78 -2.91 -0.02 3.06 16 9 C 0.04 2.02 2.83 -10.24 -0.03 1.99 16 10 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 11 C -0.09 -4.22 5.56 31.67 0.18 -4.05 16 12 C -0.12 -5.00 6.59 31.32 0.21 -4.79 16 13 C 0.17 6.33 3.23 45.71 0.15 6.47 16 14 H 0.07 2.68 7.60 -2.39 -0.02 2.66 16 15 N -0.73 -21.57 5.00 -454.36 -2.27 -23.84 16 16 C 0.70 21.99 8.26 179.06 1.48 23.47 16 17 O -0.63 -25.03 14.19 -3.99 -0.06 -25.09 16 18 N -0.70 -15.98 5.67 -434.71 -2.46 -18.45 16 19 C 0.08 1.76 2.99 4.32 0.01 1.77 16 20 C -0.16 -2.81 10.06 30.59 0.31 -2.50 16 21 C -0.14 -1.90 6.94 -10.07 -0.07 -1.97 16 22 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 23 C -0.09 -1.05 6.63 31.67 0.21 -0.84 16 24 C -0.12 -1.82 6.88 31.69 0.22 -1.60 16 25 C -0.09 -1.97 5.62 31.48 0.18 -1.79 16 26 C -0.11 -4.10 5.94 31.68 0.19 -3.91 16 27 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 28 H 0.04 2.00 7.37 -2.39 -0.02 1.98 16 29 H 0.04 1.84 8.04 -2.39 -0.02 1.82 16 30 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.06 2.24 7.92 -2.39 -0.02 2.23 16 32 H 0.41 9.64 8.35 -92.71 -0.77 8.86 16 33 H 0.41 6.67 8.84 -92.70 -0.82 5.85 16 34 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.05 1.52 6.68 -2.39 -0.02 1.50 16 42 H 0.07 2.70 7.63 -2.38 -0.02 2.68 16 43 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -67.48 341.24 0.60 -66.88 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: -0.59 Total: 23.93 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 3.69 Total: -15.05 kcal Atomic # 7 Polarization: -91.36 SS G_CDS: -4.48 Total: -95.84 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.06 Total: -25.09 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -67.48 0.60 -66.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596613897.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.708 kcal (2) G-P(sol) polarization free energy of solvation -67.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds