Wall clock time and date at job start Tue Mar 31 2020 00:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99997 * 2 1 4 4 H 1.48497 * 109.47133 * 270.00539 * 3 2 1 5 5 H 1.48502 * 109.47164 * 30.00658 * 3 2 1 6 6 H 1.48498 * 109.46786 * 150.00834 * 3 2 1 7 7 C 1.37869 * 119.99890 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00136 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00267 * 179.97438 * 7 2 1 10 10 H 1.09006 * 110.53692 * 57.38524 * 9 7 2 11 11 C 1.54265 * 110.48496 * 294.77624 * 9 7 2 12 12 C 1.53877 * 106.59605 * 217.70899 * 11 9 7 13 13 C 1.54463 * 106.68421 * 0.15594 * 12 11 9 14 14 H 1.09003 * 110.40626 * 264.75463 * 13 12 11 15 15 N 1.46505 * 110.65957 * 142.05289 * 13 12 11 16 16 C 1.34779 * 119.99750 * 90.24214 * 15 13 12 17 17 O 1.21585 * 120.00106 * 359.97438 * 16 15 13 18 18 N 1.34775 * 119.99657 * 180.02562 * 16 15 13 19 19 C 1.46499 * 119.99882 * 179.97438 * 18 16 15 20 20 C 1.53001 * 119.29755 * 109.04650 * 19 18 16 21 21 C 1.53878 * 121.33347 * 180.88305 * 19 18 16 22 22 H 1.08998 * 121.32637 * 0.56765 * 21 19 18 23 23 C 1.54264 * 106.59999 * 138.06710 * 21 19 18 24 24 C 1.54891 * 104.19554 * 336.38706 * 23 21 19 25 25 C 1.54271 * 117.41596 * 314.70872 * 19 18 16 26 26 C 1.54887 * 110.48805 * 179.97438 * 9 7 2 27 27 H 0.97007 * 119.99844 * 359.97438 * 1 2 3 28 28 H 1.08995 * 110.03137 * 336.98824 * 11 9 7 29 29 H 1.08998 * 110.03049 * 98.37512 * 11 9 7 30 30 H 1.08999 * 110.03493 * 119.28247 * 12 11 9 31 31 H 1.08997 * 110.03317 * 240.71381 * 12 11 9 32 32 H 0.97002 * 119.99898 * 270.24048 * 15 13 12 33 33 H 0.97001 * 120.00577 * 359.97438 * 18 16 15 34 34 H 1.08999 * 117.46686 * 218.90163 * 20 19 18 35 35 H 1.08996 * 117.46262 * 3.71454 * 20 19 18 36 36 H 1.09001 * 110.48402 * 217.71920 * 23 21 19 37 37 H 1.09001 * 110.60026 * 95.12550 * 23 21 19 38 38 H 1.08995 * 110.76167 * 279.63489 * 24 23 21 39 39 H 1.09001 * 110.75479 * 156.25592 * 24 23 21 40 40 H 1.08999 * 110.47958 * 2.31051 * 25 19 18 41 41 H 1.09004 * 110.48473 * 124.81585 * 25 19 18 42 42 H 1.09002 * 110.75856 * 274.93801 * 26 9 7 43 43 H 1.09006 * 110.75640 * 38.12787 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8943 -0.6441 0.8587 11 6 4.0509 -0.5882 -1.3133 12 6 5.2974 -1.4057 -1.6950 13 6 5.4717 -2.4845 -0.6034 14 1 6.1732 -2.1444 0.1585 15 7 5.9247 -3.7473 -1.1921 16 6 7.2431 -4.0009 -1.3104 17 8 8.0565 -3.1817 -0.9289 18 7 7.6598 -5.1624 -1.8525 19 6 9.0929 -5.4379 -1.9816 20 6 9.7352 -6.4981 -1.0847 21 6 9.6026 -6.7449 -2.6140 22 1 8.9119 -7.4985 -2.9921 23 6 10.7892 -6.3615 -3.5222 24 6 10.5432 -4.8697 -3.8590 25 6 9.9875 -4.3060 -2.5277 26 6 4.0536 -2.6450 -0.0010 27 1 -0.4850 0.8401 0.0004 28 1 3.2983 -0.6667 -2.0978 29 1 4.3214 0.4563 -1.1587 30 1 5.1497 -1.8809 -2.6648 31 1 6.1737 -0.7582 -1.7256 32 1 5.2758 -4.4007 -1.4968 33 1 7.0110 -5.8159 -2.1572 34 1 10.7325 -6.2911 -0.6966 35 1 9.0787 -7.0573 -0.4181 36 1 10.7840 -6.9634 -4.4309 37 1 11.7333 -6.4821 -2.9911 38 1 9.8080 -4.7700 -4.6575 39 1 11.4768 -4.3755 -4.1280 40 1 9.3974 -3.4079 -2.7104 41 1 10.7997 -4.0927 -1.8327 42 1 4.1070 -3.0374 1.0145 43 1 3.4374 -3.2876 -0.6300 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596613898.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:59 Heat of formation + Delta-G solvation = -15.523252 kcal Electronic energy + Delta-G solvation = -21775.435978 eV Core-core repulsion = 18627.551681 eV Total energy + Delta-G solvation = -3147.884297 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -40.48289 -39.03216 -37.22843 -33.89113 -33.45467 -32.04424 -31.29437 -28.50414 -28.13720 -27.22325 -23.64369 -22.91072 -21.76867 -20.55651 -20.08197 -19.45967 -19.17161 -17.99032 -16.97992 -16.53371 -15.45215 -15.38264 -15.02081 -14.54189 -14.29190 -13.87329 -13.74374 -13.37838 -13.17599 -12.83061 -12.51842 -12.26919 -12.16043 -11.72365 -11.30345 -11.27752 -11.16643 -11.03720 -10.92531 -10.83584 -10.42817 -10.21055 -10.12114 -10.03546 -9.75306 -9.67404 -9.48347 -8.97560 -8.94444 -8.56637 -8.49768 -6.06665 -4.05679 2.69386 3.17505 3.31632 3.40329 3.43321 3.48824 4.19099 4.27263 4.37755 4.44168 4.61350 4.85838 5.06532 5.17607 5.20953 5.31647 5.34803 5.40625 5.51148 5.55126 5.58222 5.60459 5.63914 5.79091 5.91553 6.09530 6.10752 6.13169 6.18980 6.30402 6.49469 6.51332 6.59142 6.63740 6.74594 6.90333 6.93786 7.13598 7.16868 7.53780 7.78893 8.16501 8.52767 8.77584 8.96404 9.56529 11.06447 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.044117 B = 0.003285 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.519426 B = 8522.131268 C = 8802.325031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.070 3.930 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.263 1.263 7 C -0.509 4.509 8 H 0.073 0.927 9 C 0.014 3.986 10 H 0.035 0.965 11 C -0.129 4.129 12 C -0.129 4.129 13 C 0.153 3.847 14 H 0.088 0.912 15 N -0.734 5.734 16 C 0.705 3.295 17 O -0.586 6.586 18 N -0.717 5.717 19 C 0.122 3.878 20 C -0.158 4.158 21 C -0.168 4.168 22 H 0.112 0.888 23 C -0.095 4.095 24 C -0.126 4.126 25 C -0.085 4.085 26 C -0.108 4.108 27 H 0.263 0.737 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.394 0.606 33 H 0.395 0.605 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.058 0.942 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.491 -13.541 -6.956 24.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.131 4.131 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.188 1.188 7 C -0.547 4.547 8 H 0.091 0.909 9 C -0.006 4.006 10 H 0.053 0.947 11 C -0.168 4.168 12 C -0.168 4.168 13 C 0.048 3.952 14 H 0.106 0.894 15 N -0.388 5.388 16 C 0.405 3.595 17 O -0.463 6.463 18 N -0.371 5.371 19 C 0.033 3.967 20 C -0.197 4.197 21 C -0.187 4.187 22 H 0.130 0.870 23 C -0.132 4.132 24 C -0.163 4.163 25 C -0.124 4.124 26 C -0.147 4.147 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.227 0.773 33 H 0.229 0.771 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 20.047 -12.612 -6.601 24.587 hybrid contribution -0.440 0.237 -0.355 0.614 sum 19.607 -12.375 -6.956 24.206 Atomic orbital electron populations 1.69909 1.06306 1.26914 1.51040 1.24991 0.94637 0.99053 0.94416 0.86911 0.80223 0.83683 0.78529 1.20308 1.22048 1.18782 1.20997 0.88569 0.94382 1.50721 0.90869 1.19912 0.96605 0.91020 0.93020 0.94731 1.22607 0.95531 0.97563 1.01071 1.22551 0.98647 0.97437 0.98171 1.21971 0.96703 0.81614 0.94886 0.89385 1.45372 1.04731 1.21875 1.66776 1.15961 0.83188 0.81804 0.78540 1.90896 1.52963 1.47260 1.55216 1.44364 1.05734 1.19782 1.67210 1.21294 0.81156 0.91191 1.03035 1.23972 1.02410 1.01567 0.91754 1.24102 1.00876 0.99526 0.94215 0.86985 1.21960 0.96677 0.96197 0.98394 1.22729 1.00933 0.94932 0.97725 1.22028 0.97824 0.97038 0.95460 1.22687 0.92297 1.00177 0.99512 0.92716 0.91356 0.93934 0.92460 0.92673 0.77279 0.77056 0.88372 0.88201 0.91140 0.91119 0.91356 0.91070 0.89706 0.90738 0.92303 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 2 C 0.07 2.01 5.46 -17.82 -0.10 1.91 16 3 Si 0.88 21.75 24.88 -169.99 -4.23 17.52 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.26 -6.28 6.41 56.52 0.36 -5.91 16 7 C -0.51 -13.93 8.94 -34.44 -0.31 -14.24 16 8 H 0.07 2.15 8.01 -52.48 -0.42 1.73 16 9 C 0.01 0.32 2.28 -90.11 -0.21 0.11 16 10 H 0.03 0.82 7.06 -51.93 -0.37 0.45 16 11 C -0.13 -2.74 4.89 -25.61 -0.13 -2.87 16 12 C -0.13 -2.33 6.55 -25.51 -0.17 -2.50 16 13 C 0.15 2.63 3.23 -66.15 -0.21 2.42 16 14 H 0.09 1.64 7.56 -51.93 -0.39 1.25 16 15 N -0.73 -10.47 5.11 -56.94 -0.29 -10.76 16 16 C 0.70 10.60 8.27 -86.92 -0.72 9.88 16 17 O -0.59 -10.99 14.11 5.29 0.07 -10.91 16 18 N -0.72 -8.12 5.67 -51.37 -0.29 -8.42 16 19 C 0.12 1.30 2.93 -130.70 -0.38 0.92 16 20 C -0.16 -1.43 10.18 -25.42 -0.26 -1.69 16 21 C -0.17 -1.34 7.04 -88.19 -0.62 -1.96 16 22 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 23 C -0.09 -0.67 6.64 -25.07 -0.17 -0.84 16 24 C -0.13 -1.05 6.91 -24.74 -0.17 -1.22 16 25 C -0.09 -0.96 5.63 -25.07 -0.14 -1.10 16 26 C -0.11 -2.04 5.89 -24.73 -0.15 -2.19 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.07 1.52 7.83 -51.93 -0.41 1.11 16 29 H 0.04 0.91 6.05 -51.93 -0.31 0.59 16 30 H 0.06 0.97 8.04 -51.93 -0.42 0.56 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.39 4.57 8.58 -40.82 -0.35 4.22 16 33 H 0.40 3.38 8.84 -40.82 -0.36 3.01 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.08 1.19 6.63 -51.93 -0.34 0.85 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.07 1.23 7.92 -51.93 -0.41 0.82 16 LS Contribution 335.44 15.07 5.06 5.06 Total: -1.00 -31.96 335.44 -9.82 -41.77 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -7.19 Total: 5.78 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -3.72 Total: -13.36 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.19 Total: -45.85 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.07 Total: -10.91 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.23 Total: 17.52 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.96 -9.82 -41.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596613898.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.249 kcal (2) G-P(sol) polarization free energy of solvation -31.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds