Wall clock time and date at job start Mon Mar 30 2020 23:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47012 * 125.60676 * 3 2 1 5 5 C 1.50703 * 109.47292 * 300.00097 * 4 3 2 6 6 O 1.21278 * 119.99818 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99991 * 180.02562 * 5 4 3 8 8 C 1.46499 * 119.99824 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47125 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47143 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47078 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00019 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99908 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99546 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00061 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47023 * 90.00536 * 15 13 11 17 17 H 1.48503 * 109.47041 * 210.00292 * 15 13 11 18 18 H 1.48498 * 109.47098 * 330.00216 * 15 13 11 19 19 C 1.52997 * 109.47172 * 245.60665 * 3 2 1 20 20 C 1.53002 * 109.46817 * 60.00286 * 19 3 2 21 21 C 1.53000 * 109.47233 * 60.00194 * 20 19 3 22 22 C 1.52997 * 109.47060 * 299.99657 * 21 20 19 23 23 C 1.52999 * 109.47317 * 59.99960 * 22 21 20 24 24 H 1.09004 * 109.46930 * 60.00072 * 4 3 2 25 25 H 1.09002 * 109.47067 * 179.97438 * 4 3 2 26 26 H 0.97004 * 120.00071 * 359.97438 * 7 5 4 27 27 H 1.09004 * 109.47041 * 299.99672 * 8 7 5 28 28 H 1.09002 * 109.47391 * 59.99855 * 8 7 5 29 29 H 1.09004 * 109.46930 * 299.99785 * 9 8 7 30 30 H 1.09002 * 109.47067 * 59.99702 * 9 8 7 31 31 H 1.08993 * 109.47194 * 300.00323 * 10 9 8 32 32 H 1.09002 * 109.47153 * 60.00035 * 10 9 8 33 33 H 0.97005 * 119.99945 * 180.02562 * 14 13 11 34 34 H 1.08993 * 109.47194 * 299.99768 * 19 3 2 35 35 H 1.09002 * 109.46695 * 179.97438 * 19 3 2 36 36 H 1.08992 * 109.47063 * 299.99823 * 20 19 3 37 37 H 1.09004 * 109.46733 * 179.97438 * 20 19 3 38 38 H 1.09002 * 109.47398 * 59.99826 * 21 20 19 39 39 H 1.09001 * 109.47194 * 180.02562 * 21 20 19 40 40 H 1.08996 * 109.47853 * 180.02562 * 22 21 20 41 41 H 1.09002 * 109.47153 * 300.00319 * 22 21 20 42 42 H 1.09000 * 109.47486 * 180.02562 * 23 22 21 43 43 H 1.09002 * 109.46716 * 60.00091 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8408 -1.1728 5 6 2.6155 0.2538 -2.4668 6 8 1.9191 -0.7390 -2.4524 7 7 2.9412 0.8315 -3.6401 8 6 2.4527 0.2612 -4.8980 9 6 2.9624 1.1012 -6.0708 10 6 2.4527 0.5052 -7.3845 11 6 2.9542 1.3330 -8.5396 12 1 3.5748 2.1974 -8.3552 13 6 2.6207 0.9867 -9.8319 14 7 3.0589 1.7088 -10.8400 15 14 1.5479 -0.5088 -10.1509 16 1 0.1199 -0.1017 -10.1557 17 1 1.8991 -1.0981 -11.4680 18 1 1.7721 -1.5157 -9.0826 19 6 3.1177 0.5966 1.3137 20 6 2.6081 -0.2436 2.4865 21 6 3.1188 -1.6789 2.3455 22 6 2.6091 -2.2749 1.0318 23 6 3.1186 -1.4348 -0.1410 24 1 2.7538 1.8634 -1.0724 25 1 4.2076 0.8416 -1.1726 26 1 3.4986 1.6254 -3.6516 27 1 2.8157 -0.7617 -4.9984 28 1 1.3627 0.2615 -4.8980 29 1 2.5990 2.1239 -5.9702 30 1 4.0524 1.1013 -6.0710 31 1 2.8163 -0.5173 -7.4849 32 1 1.3627 0.5048 -7.3846 33 1 2.8240 1.4655 -11.7492 34 1 2.7540 1.6192 1.4141 35 1 4.2077 0.5967 1.3138 36 1 1.5182 -0.2440 2.4865 37 1 2.9717 0.1808 3.4224 38 1 4.2089 -1.6784 2.3455 39 1 2.7554 -2.2776 3.1808 40 1 2.9725 -3.2976 0.9315 41 1 1.5191 -2.2754 1.0318 42 1 2.7551 -1.8591 -1.0769 43 1 4.2086 -1.4343 -0.1410 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597149977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:29 Heat of formation + Delta-G solvation = -47.954562 kcal Electronic energy + Delta-G solvation = -21323.618305 eV Core-core repulsion = 18174.327681 eV Total energy + Delta-G solvation = -3149.290624 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.71229 -38.78162 -35.80344 -35.57009 -33.42522 -33.15356 -31.49183 -31.15342 -28.36924 -26.55858 -23.51442 -23.06590 -22.57894 -21.14826 -20.75213 -19.86088 -17.32632 -16.80882 -16.58354 -16.03906 -15.72894 -15.14789 -14.94987 -14.61501 -14.31398 -14.12130 -13.74510 -13.57422 -13.40066 -12.98802 -12.73001 -12.40830 -12.39163 -12.10532 -12.04947 -11.98004 -11.87217 -11.70416 -11.43586 -11.11677 -10.92366 -10.86521 -10.68492 -10.45888 -10.16854 -9.94604 -9.78738 -9.49064 -9.25076 -8.90481 -8.57438 -6.08356 -4.07183 2.59913 2.77574 2.83824 3.20873 3.30173 3.37782 3.41813 3.70783 4.23283 4.35247 4.42761 4.42839 4.66207 4.70315 4.84099 4.95876 5.07561 5.14458 5.17703 5.25802 5.27085 5.30609 5.44903 5.52407 5.56629 5.61904 5.69473 5.77775 5.79541 5.91652 5.97851 6.06649 6.13317 6.34609 6.40948 6.65471 6.76017 7.20052 7.33429 7.54432 7.61980 7.74222 8.23980 8.48002 8.95303 9.53967 11.04841 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038587 B = 0.002850 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.466027 B = 9823.913679 C =10005.421223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C 0.228 3.772 3 C 0.059 3.941 4 C -0.137 4.137 5 C 0.503 3.497 6 O -0.535 6.535 7 N -0.724 5.724 8 C 0.114 3.886 9 C -0.113 4.113 10 C -0.011 4.011 11 C -0.523 4.523 12 H 0.072 0.928 13 C 0.067 3.933 14 N -0.903 5.903 15 Si 0.880 3.120 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.264 1.264 19 C -0.108 4.108 20 C -0.124 4.124 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.122 4.122 24 H 0.102 0.898 25 H 0.115 0.885 26 H 0.401 0.599 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.019 0.981 32 H 0.014 0.986 33 H 0.263 0.737 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.102 0.898 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.052 -2.963 27.606 28.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.090 4.090 3 C 0.055 3.945 4 C -0.178 4.178 5 C 0.289 3.711 6 O -0.412 6.412 7 N -0.374 5.374 8 C -0.009 4.009 9 C -0.151 4.151 10 C -0.049 4.049 11 C -0.560 4.560 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.542 5.542 15 Si 0.707 3.293 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.189 1.189 19 C -0.146 4.146 20 C -0.162 4.162 21 C -0.158 4.158 22 C -0.160 4.160 23 C -0.160 4.160 24 H 0.120 0.880 25 H 0.133 0.867 26 H 0.235 0.765 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.120 0.880 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.808 -3.670 27.391 27.778 hybrid contribution 0.089 -0.261 -0.495 0.566 sum 2.898 -3.931 26.896 27.336 Atomic orbital electron populations 1.81155 1.12818 1.08239 1.08932 1.28604 0.94562 0.93227 0.92573 1.18056 0.82400 0.98318 0.95718 1.21850 1.03732 1.00821 0.91380 1.20516 0.80750 0.84391 0.85440 1.90673 1.37820 1.25564 1.87184 1.46164 1.53267 1.31602 1.06386 1.21663 0.99244 0.98010 0.82001 1.21704 1.00674 0.98790 0.93935 1.19501 0.96177 0.96783 0.92464 1.21089 1.32412 1.12964 0.89577 0.90997 1.25028 0.95689 0.96556 0.96191 1.69912 1.45748 1.39456 0.99041 0.86779 0.81067 0.83768 0.77708 1.20249 1.21341 1.18905 1.21663 1.01845 0.99327 0.91808 1.21583 1.01022 0.95633 0.97915 1.21573 1.00913 0.95706 0.97602 1.21569 1.00979 0.99268 0.94208 1.21940 1.00958 0.91715 1.01360 0.87969 0.86720 0.76546 0.91668 0.91880 0.92142 0.92031 0.96311 0.96802 0.92676 0.90874 0.89503 0.92111 0.91217 0.91485 0.92002 0.91345 0.92219 0.87952 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.86 18.54 42.15 0.78 -6.07 16 2 C 0.23 2.87 9.56 -20.76 -0.20 2.67 16 3 C 0.06 0.49 0.49 -157.29 -0.08 0.41 16 4 C -0.14 -1.00 4.75 -27.88 -0.13 -1.13 16 5 C 0.50 6.12 7.25 -10.98 -0.08 6.04 16 6 O -0.53 -8.61 12.49 5.56 0.07 -8.54 16 7 N -0.72 -8.79 5.56 -60.29 -0.33 -9.13 16 8 C 0.11 1.80 5.67 -4.04 -0.02 1.78 16 9 C -0.11 -2.04 5.27 -26.73 -0.14 -2.18 16 10 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 11 C -0.52 -14.60 9.66 -34.44 -0.33 -14.93 16 12 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 13 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 14 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 15 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 19 C -0.11 -0.59 4.71 -26.73 -0.13 -0.71 16 20 C -0.12 -0.77 5.70 -26.73 -0.15 -0.92 16 21 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 22 C -0.12 -1.00 5.70 -26.73 -0.15 -1.15 16 23 C -0.12 -1.04 4.42 -26.73 -0.12 -1.16 16 24 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.40 3.68 8.47 -40.82 -0.35 3.33 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 32 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.06 0.50 7.23 -51.93 -0.38 0.12 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.62 7.23 -51.93 -0.38 0.24 16 42 H 0.10 1.20 5.51 -51.93 -0.29 0.92 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 342.72 15.07 5.16 5.16 Total: -1.00 -34.62 342.72 -7.35 -41.96 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -7.23 Total: -2.86 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -1.90 Total: -10.73 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 1.22 Total: -42.06 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.07 Total: -8.54 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.62 -7.35 -41.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597149977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.992 kcal (2) G-P(sol) polarization free energy of solvation -34.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds