Wall clock time and date at job start Mon Mar 30 2020 23:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47012 * 125.60676 * 3 2 1 5 5 C 1.50703 * 109.47292 * 300.00097 * 4 3 2 6 6 O 1.21278 * 119.99818 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99991 * 180.02562 * 5 4 3 8 8 C 1.46499 * 119.99824 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47125 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47143 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47078 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00019 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99908 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99546 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00061 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47023 * 90.00536 * 15 13 11 17 17 H 1.48503 * 109.47041 * 210.00292 * 15 13 11 18 18 H 1.48498 * 109.47098 * 330.00216 * 15 13 11 19 19 C 1.52997 * 109.47172 * 245.60665 * 3 2 1 20 20 C 1.53002 * 109.46817 * 60.00286 * 19 3 2 21 21 C 1.53000 * 109.47233 * 60.00194 * 20 19 3 22 22 C 1.52997 * 109.47060 * 299.99657 * 21 20 19 23 23 C 1.52999 * 109.47317 * 59.99960 * 22 21 20 24 24 H 1.09004 * 109.46930 * 60.00072 * 4 3 2 25 25 H 1.09002 * 109.47067 * 179.97438 * 4 3 2 26 26 H 0.97004 * 120.00071 * 359.97438 * 7 5 4 27 27 H 1.09004 * 109.47041 * 299.99672 * 8 7 5 28 28 H 1.09002 * 109.47391 * 59.99855 * 8 7 5 29 29 H 1.09004 * 109.46930 * 299.99785 * 9 8 7 30 30 H 1.09002 * 109.47067 * 59.99702 * 9 8 7 31 31 H 1.08993 * 109.47194 * 300.00323 * 10 9 8 32 32 H 1.09002 * 109.47153 * 60.00035 * 10 9 8 33 33 H 0.97005 * 119.99945 * 180.02562 * 14 13 11 34 34 H 1.08993 * 109.47194 * 299.99768 * 19 3 2 35 35 H 1.09002 * 109.46695 * 179.97438 * 19 3 2 36 36 H 1.08992 * 109.47063 * 299.99823 * 20 19 3 37 37 H 1.09004 * 109.46733 * 179.97438 * 20 19 3 38 38 H 1.09002 * 109.47398 * 59.99826 * 21 20 19 39 39 H 1.09001 * 109.47194 * 180.02562 * 21 20 19 40 40 H 1.08996 * 109.47853 * 180.02562 * 22 21 20 41 41 H 1.09002 * 109.47153 * 300.00319 * 22 21 20 42 42 H 1.09000 * 109.47486 * 180.02562 * 23 22 21 43 43 H 1.09002 * 109.46716 * 60.00091 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8408 -1.1728 5 6 2.6155 0.2538 -2.4668 6 8 1.9191 -0.7390 -2.4524 7 7 2.9412 0.8315 -3.6401 8 6 2.4527 0.2612 -4.8980 9 6 2.9624 1.1012 -6.0708 10 6 2.4527 0.5052 -7.3845 11 6 2.9542 1.3330 -8.5396 12 1 3.5748 2.1974 -8.3552 13 6 2.6207 0.9867 -9.8319 14 7 3.0589 1.7088 -10.8400 15 14 1.5479 -0.5088 -10.1509 16 1 0.1199 -0.1017 -10.1557 17 1 1.8991 -1.0981 -11.4680 18 1 1.7721 -1.5157 -9.0826 19 6 3.1177 0.5966 1.3137 20 6 2.6081 -0.2436 2.4865 21 6 3.1188 -1.6789 2.3455 22 6 2.6091 -2.2749 1.0318 23 6 3.1186 -1.4348 -0.1410 24 1 2.7538 1.8634 -1.0724 25 1 4.2076 0.8416 -1.1726 26 1 3.4986 1.6254 -3.6516 27 1 2.8157 -0.7617 -4.9984 28 1 1.3627 0.2615 -4.8980 29 1 2.5990 2.1239 -5.9702 30 1 4.0524 1.1013 -6.0710 31 1 2.8163 -0.5173 -7.4849 32 1 1.3627 0.5048 -7.3846 33 1 2.8240 1.4655 -11.7492 34 1 2.7540 1.6192 1.4141 35 1 4.2077 0.5967 1.3138 36 1 1.5182 -0.2440 2.4865 37 1 2.9717 0.1808 3.4224 38 1 4.2089 -1.6784 2.3455 39 1 2.7554 -2.2776 3.1808 40 1 2.9725 -3.2976 0.9315 41 1 1.5191 -2.2754 1.0318 42 1 2.7551 -1.8591 -1.0769 43 1 4.2086 -1.4343 -0.1410 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597149977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:59:28 Heat of formation + Delta-G solvation = -71.367131 kcal Electronic energy + Delta-G solvation = -21324.633550 eV Core-core repulsion = 18174.327681 eV Total energy + Delta-G solvation = -3150.305869 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.50283 -39.62686 -36.97050 -36.72004 -35.13844 -33.93998 -33.19481 -31.68009 -29.58856 -27.75849 -24.72623 -23.71882 -23.58369 -22.23347 -21.80818 -20.96595 -18.98798 -18.02383 -17.43135 -16.99475 -16.76927 -16.31655 -15.94753 -15.63895 -15.56113 -15.10053 -14.78832 -14.64750 -14.35481 -14.18313 -13.87707 -13.80669 -13.64358 -13.06122 -12.90126 -12.77858 -12.74768 -12.71890 -12.58230 -12.38725 -11.98280 -11.90338 -11.77250 -11.59968 -11.41256 -11.33821 -11.30789 -10.98197 -10.77532 -10.48916 -9.99819 -8.30680 -6.34049 1.34912 1.36514 1.47946 1.69793 1.85165 1.93056 2.27459 2.34592 2.97819 3.05157 3.60082 3.72289 3.87790 4.01855 4.14908 4.16924 4.20840 4.29805 4.43724 4.51083 4.55601 4.62533 4.71062 4.78954 4.83846 4.89053 4.93372 4.97486 5.04059 5.12320 5.22786 5.26139 5.28368 5.40639 5.42327 5.49644 5.54704 5.55488 5.61272 5.65163 6.26614 6.64285 6.70885 6.74370 7.30786 7.34746 8.85633 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038587 B = 0.002850 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.466027 B = 9823.913679 C =10005.421223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C 0.248 3.752 3 C 0.055 3.945 4 C -0.128 4.128 5 C 0.496 3.504 6 O -0.580 6.580 7 N -0.716 5.716 8 C 0.128 3.872 9 C -0.099 4.099 10 C -0.014 4.014 11 C -0.529 4.529 12 H 0.040 0.960 13 C 0.006 3.994 14 N -0.949 5.949 15 Si 0.944 3.056 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.249 1.249 19 C -0.102 4.102 20 C -0.127 4.127 21 C -0.115 4.115 22 C -0.124 4.124 23 C -0.120 4.120 24 H 0.126 0.874 25 H 0.164 0.836 26 H 0.418 0.582 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.020 0.980 32 H 0.013 0.987 33 H 0.266 0.734 34 H 0.084 0.916 35 H 0.126 0.874 36 H 0.029 0.971 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.023 0.977 42 H 0.066 0.934 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.105 -2.888 29.802 30.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.185 5.185 2 C -0.068 4.068 3 C 0.051 3.949 4 C -0.168 4.168 5 C 0.284 3.716 6 O -0.460 6.460 7 N -0.369 5.369 8 C 0.003 3.997 9 C -0.137 4.137 10 C -0.052 4.052 11 C -0.567 4.567 12 H 0.059 0.941 13 C -0.191 4.191 14 N -0.590 5.590 15 Si 0.768 3.232 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.173 1.173 19 C -0.140 4.140 20 C -0.164 4.164 21 C -0.153 4.153 22 C -0.162 4.162 23 C -0.158 4.158 24 H 0.144 0.856 25 H 0.182 0.818 26 H 0.255 0.745 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.039 0.961 32 H 0.032 0.968 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.145 0.855 36 H 0.048 0.952 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.881 -3.569 29.618 30.229 hybrid contribution -0.512 -0.267 -1.162 1.298 sum 4.369 -3.836 28.456 29.044 Atomic orbital electron populations 1.81144 1.15263 1.10629 1.11475 1.29657 0.95698 0.91117 0.90372 1.18501 0.79420 0.98832 0.98126 1.21992 1.06492 1.01001 0.87306 1.21461 0.79772 0.83673 0.86692 1.90687 1.39738 1.27708 1.87868 1.45988 1.53457 1.32165 1.05243 1.21213 0.98054 0.97353 0.83068 1.21470 1.01054 0.98830 0.92356 1.19476 0.96070 0.96276 0.93338 1.21466 1.31463 1.12427 0.91331 0.94125 1.25951 0.97304 0.99784 0.96090 1.70052 1.47676 1.41628 0.99627 0.85740 0.79161 0.80225 0.78030 1.19597 1.20879 1.17251 1.21746 1.04038 0.99203 0.88988 1.21621 0.99213 0.96056 0.99540 1.21562 1.02309 0.95484 0.95918 1.21574 0.98814 0.99956 0.95850 1.21913 1.02865 0.91569 0.99424 0.85617 0.81825 0.74519 0.92401 0.93704 0.91870 0.91130 0.96123 0.96825 0.92505 0.89757 0.85550 0.95229 0.89130 0.88878 0.92227 0.91050 0.95783 0.91547 0.86849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -16.75 18.54 20.00 0.37 -16.38 16 2 C 0.25 6.22 9.56 89.44 0.86 7.07 16 3 C 0.06 0.76 0.49 -53.99 -0.03 0.74 16 4 C -0.13 -1.32 4.75 29.85 0.14 -1.18 16 5 C 0.50 11.02 7.25 87.66 0.64 11.66 16 6 O -0.58 -18.59 12.49 -3.02 -0.04 -18.63 16 7 N -0.72 -15.76 5.56 -463.05 -2.57 -18.33 16 8 C 0.13 3.90 5.67 86.38 0.49 4.39 16 9 C -0.10 -3.46 5.27 30.59 0.16 -3.30 16 10 C -0.01 -0.62 4.04 29.85 0.12 -0.50 16 11 C -0.53 -29.83 9.66 25.60 0.25 -29.58 16 12 H 0.04 2.47 7.99 -2.91 -0.02 2.45 16 13 C 0.01 0.33 5.47 84.65 0.46 0.79 16 14 N -0.95 -59.13 13.96 21.45 0.30 -58.83 16 15 Si 0.94 44.70 27.47 68.60 1.88 46.59 16 16 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 17 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 18 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 19 C -0.10 -0.65 4.71 30.59 0.14 -0.51 16 20 C -0.13 -1.23 5.70 30.60 0.17 -1.05 16 21 C -0.12 -1.12 5.92 30.59 0.18 -0.94 16 22 C -0.12 -1.93 5.70 30.59 0.17 -1.76 16 23 C -0.12 -1.79 4.42 30.60 0.14 -1.65 16 24 H 0.13 0.83 8.14 -2.38 -0.02 0.81 16 25 H 0.16 0.20 8.14 -2.39 -0.02 0.18 16 26 H 0.42 6.26 8.47 -92.71 -0.79 5.48 16 27 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 32 H 0.01 0.61 7.57 -2.39 -0.02 0.60 16 33 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 34 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.13 -0.07 8.14 -2.39 -0.02 -0.09 16 36 H 0.03 0.47 7.23 -2.39 -0.02 0.45 16 37 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.02 0.53 7.23 -2.39 -0.02 0.51 16 42 H 0.07 1.54 5.51 -2.39 -0.01 1.52 16 43 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -80.81 342.72 3.99 -76.82 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: 0.15 Total: 4.59 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 3.90 Total: -15.82 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -1.90 Total: -93.55 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.04 Total: -18.63 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.59 kcal Total: -80.81 3.99 -76.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597149977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.449 kcal (2) G-P(sol) polarization free energy of solvation -80.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds