Wall clock time and date at job start Tue Mar 31 2020 00:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00485 * 2 1 4 4 H 1.48504 * 109.46854 * 239.72368 * 3 2 1 5 5 H 1.48495 * 109.46961 * 359.71942 * 3 2 1 6 6 H 1.48496 * 109.47434 * 119.72339 * 3 2 1 7 7 C 1.38816 * 119.99562 * 179.71965 * 2 1 3 8 8 H 1.08001 * 120.00019 * 168.91382 * 7 2 1 9 9 N 1.36937 * 120.00067 * 348.91404 * 7 2 1 10 10 C 1.46966 * 120.59324 * 149.01427 * 9 7 2 11 11 C 1.53813 * 108.39675 * 124.76036 * 10 9 7 12 12 N 1.46965 * 108.57958 * 49.63773 * 11 10 9 13 13 C 1.34778 * 120.59113 * 124.67110 * 12 11 10 14 14 O 1.21283 * 120.00433 * 5.43118 * 13 12 11 15 15 C 1.50698 * 119.99755 * 185.43331 * 13 12 11 16 16 H 1.09003 * 109.26339 * 45.35867 * 15 13 12 17 17 C 1.52875 * 109.26812 * 285.85879 * 15 13 12 18 18 C 1.53296 * 108.59094 * 184.84445 * 17 15 13 19 19 C 1.52877 * 108.58566 * 74.44143 * 18 17 15 20 20 C 1.52717 * 110.15031 * 305.47838 * 19 18 17 21 21 H 1.08994 * 115.38895 * 232.82296 * 20 19 18 22 22 C 1.53647 * 116.02747 * 90.19921 * 20 19 18 23 23 C 1.52066 * 120.52190 * 21.47270 * 20 19 18 24 24 H 1.09006 * 115.93155 * 209.99319 * 23 20 19 25 25 C 1.46961 * 118.81269 * 304.64508 * 12 11 10 26 26 C 1.46965 * 120.59499 * 329.29240 * 9 7 2 27 27 H 0.97003 * 119.99065 * 0.28171 * 1 2 3 28 28 H 1.09001 * 109.60910 * 244.54220 * 10 9 7 29 29 H 1.08998 * 109.61211 * 5.05345 * 10 9 7 30 30 H 1.08998 * 109.73900 * 289.84337 * 11 10 9 31 31 H 1.09006 * 109.67168 * 169.38919 * 11 10 9 32 32 H 1.09000 * 109.61186 * 304.57067 * 17 15 13 33 33 H 1.08997 * 109.62014 * 65.10822 * 17 15 13 34 34 H 1.08997 * 109.61888 * 194.17266 * 18 17 15 35 35 H 1.09003 * 109.61862 * 314.71165 * 18 17 15 36 36 H 1.08990 * 109.35653 * 65.68789 * 19 18 17 37 37 H 1.08998 * 109.36009 * 185.41404 * 19 18 17 38 38 H 1.09003 * 117.54417 * 355.69412 * 22 20 19 39 39 H 1.09000 * 117.53910 * 140.86397 * 22 20 19 40 40 H 1.09009 * 109.60870 * 295.48344 * 25 12 11 41 41 H 1.08993 * 109.75016 * 175.05780 * 25 12 11 42 42 H 1.09001 * 109.60773 * 354.95160 * 26 9 7 43 43 H 1.09005 * 109.60932 * 115.28446 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1091 1.6932 -1.2092 5 1 1.2854 2.7463 -0.0069 6 1 3.0990 1.6992 1.2158 7 6 2.0102 -1.2022 0.0059 8 1 3.0751 -1.2119 -0.1739 9 7 1.3446 -2.3759 0.2397 10 6 1.8030 -3.6306 -0.3731 11 6 2.0319 -4.6616 0.7451 12 7 0.8427 -4.6880 1.6083 13 6 0.1876 -5.8432 1.8383 14 8 0.6330 -6.8881 1.4131 15 6 -1.0984 -5.8366 2.6240 16 1 -1.7340 -5.0265 2.2664 17 6 -0.7844 -5.6158 4.1037 18 6 -2.0875 -5.7328 4.9026 19 6 -2.4773 -7.2088 4.9855 20 6 -2.5511 -7.8128 3.5848 21 1 -3.4827 -8.3256 3.3455 22 6 -1.2512 -8.4315 3.0480 23 6 -1.8158 -7.1624 2.4235 24 1 -2.2700 -7.2892 1.4407 25 6 0.3810 -3.4324 2.2165 26 6 0.1554 -2.4023 1.1029 27 1 -0.4849 0.8401 -0.0041 28 1 1.0447 -3.9987 -1.0641 29 1 2.7361 -3.4565 -0.9089 30 1 2.9048 -4.3790 1.3335 31 1 2.1889 -5.6479 0.3083 32 1 -0.0771 -6.3719 4.4445 33 1 -0.3576 -4.6225 4.2431 34 1 -1.9378 -5.3369 5.9070 35 1 -2.8765 -5.1736 4.3998 36 1 -1.7327 -7.7467 5.5721 37 1 -3.4509 -7.2988 5.4673 38 1 -0.3561 -8.3358 3.6626 39 1 -1.3318 -9.3553 2.4751 40 1 1.1364 -3.0622 2.9097 41 1 -0.5533 -3.6038 2.7510 42 1 0.0002 -1.4168 1.5420 43 1 -0.7181 -2.6820 0.5138 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597273505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:59 Heat of formation + Delta-G solvation = 8.713630 kcal Electronic energy + Delta-G solvation = -22836.628584 eV Core-core repulsion = 19689.795277 eV Total energy + Delta-G solvation = -3146.833307 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.49411 -38.48012 -36.61254 -34.00377 -33.06193 -31.75505 -30.74725 -29.93510 -26.96609 -25.21341 -23.58280 -23.07836 -22.39978 -21.55731 -20.39539 -18.85997 -18.12551 -17.07710 -16.45927 -15.94769 -15.38589 -14.88344 -14.74268 -13.96286 -13.88833 -13.71819 -13.49273 -13.37798 -13.24577 -13.17226 -12.70751 -12.29326 -12.12490 -11.51557 -11.38175 -11.25247 -11.12978 -10.88322 -10.83765 -10.73213 -10.53603 -10.36055 -10.22918 -10.04188 -9.98308 -9.85039 -9.69983 -9.05916 -8.59649 -8.18985 -6.67541 -5.86074 -3.35476 3.05398 3.33684 3.38873 3.39237 3.42658 3.90540 4.42477 4.55240 4.66884 4.76155 4.95550 5.06943 5.13428 5.19921 5.29425 5.33964 5.40146 5.47808 5.56561 5.62413 5.78417 5.86358 5.89485 5.92227 5.96149 6.00938 6.06005 6.09998 6.14886 6.22006 6.25163 6.28660 6.33300 6.40476 6.47344 6.79490 6.96549 7.24261 7.50539 7.69825 7.99129 8.37387 8.65471 9.12215 9.72915 10.31208 11.20905 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030342 B = 0.004475 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.600889 B = 6255.123573 C = 6812.601464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.005 3.995 3 Si 0.907 3.093 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.255 4.255 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.132 3.868 11 C 0.096 3.904 12 N -0.597 5.597 13 C 0.515 3.485 14 O -0.553 6.553 15 C -0.074 4.074 16 H 0.098 0.902 17 C -0.116 4.116 18 C -0.117 4.117 19 C -0.088 4.088 20 C -0.154 4.154 21 H 0.100 0.900 22 C -0.157 4.157 23 C -0.117 4.117 24 H 0.098 0.902 25 C 0.077 3.923 26 C 0.156 3.844 27 H 0.256 0.744 28 H 0.023 0.977 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.103 0.897 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.654 -11.218 9.443 15.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.194 4.194 3 Si 0.737 3.263 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.385 4.385 8 H 0.084 0.916 9 N -0.314 5.314 10 C 0.005 3.995 11 C -0.028 4.028 12 N -0.329 5.329 13 C 0.302 3.698 14 O -0.432 6.432 15 C -0.095 4.095 16 H 0.116 0.884 17 C -0.153 4.153 18 C -0.155 4.155 19 C -0.126 4.126 20 C -0.172 4.172 21 H 0.118 0.882 22 C -0.194 4.194 23 C -0.136 4.136 24 H 0.116 0.884 25 C -0.047 4.047 26 C 0.029 3.971 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.121 0.879 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -4.511 -11.589 9.194 15.466 hybrid contribution 0.388 0.987 -0.198 1.079 sum -4.122 -10.602 8.996 14.503 Atomic orbital electron populations 1.69935 1.05294 1.25764 1.54042 1.25164 0.95431 0.98483 1.00295 0.86301 0.78825 0.83009 0.78191 1.20817 1.21548 1.20918 1.19178 0.91028 0.83919 1.44354 0.91638 1.43957 1.31675 1.03289 1.52513 1.21395 0.98398 0.87168 0.92560 1.22250 0.86608 1.00683 0.93269 1.48056 1.29011 1.07823 1.48049 1.20510 0.85596 0.83317 0.80338 1.90619 1.68511 1.31079 1.53017 1.20589 0.94730 0.97989 0.96174 0.88393 1.21688 0.98200 1.02731 0.92706 1.21572 0.97366 0.96460 1.00065 1.21045 1.01411 0.95646 0.94458 1.22298 0.96369 1.04165 0.94355 0.88193 1.22919 0.96275 0.96613 1.03583 1.21371 1.02292 0.92974 0.96965 0.88388 1.22775 0.98868 0.85066 0.98030 1.21231 0.88612 0.97701 0.89508 0.93400 0.95924 0.91611 0.92187 0.90208 0.91489 0.90517 0.91528 0.91259 0.91793 0.91710 0.88964 0.89306 0.91970 0.90648 0.87912 0.95974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.24 10.99 55.49 0.61 -24.63 16 2 C 0.00 0.13 5.05 -17.43 -0.09 0.04 16 3 Si 0.91 21.00 29.57 -169.99 -5.03 15.97 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.26 -6.77 9.58 -15.06 -0.14 -6.92 16 8 H 0.07 1.71 7.85 -52.49 -0.41 1.29 16 9 N -0.59 -14.43 2.96 -171.76 -0.51 -14.93 16 10 C 0.13 2.79 6.70 -3.36 -0.02 2.77 16 11 C 0.10 1.81 6.60 -3.37 -0.02 1.79 16 12 N -0.60 -10.94 2.95 -172.22 -0.51 -11.45 16 13 C 0.51 9.07 6.90 -10.99 -0.08 9.00 16 14 O -0.55 -11.15 14.90 5.56 0.08 -11.07 16 15 C -0.07 -1.03 1.75 -92.31 -0.16 -1.19 16 16 H 0.10 1.36 7.17 -51.93 -0.37 0.99 16 17 C -0.12 -1.38 4.61 -26.64 -0.12 -1.50 16 18 C -0.12 -1.15 5.93 -26.64 -0.16 -1.30 16 19 C -0.09 -0.83 5.83 -26.94 -0.16 -0.99 16 20 C -0.15 -1.65 6.19 -90.90 -0.56 -2.21 16 21 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 22 C -0.16 -1.97 8.86 -26.75 -0.24 -2.21 16 23 C -0.12 -1.55 4.85 -91.93 -0.45 -2.00 16 24 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 25 C 0.08 1.37 5.60 -3.60 -0.02 1.35 16 26 C 0.16 3.52 5.47 -3.60 -0.02 3.50 16 27 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.08 1.48 7.02 -51.93 -0.36 1.12 16 32 H 0.07 0.84 7.11 -51.93 -0.37 0.47 16 33 H 0.08 0.91 6.02 -51.93 -0.31 0.60 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.68 8.04 -51.93 -0.42 0.26 16 36 H 0.06 0.59 8.06 -51.93 -0.42 0.17 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 1.23 7.26 -51.93 -0.38 0.85 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 41 H 0.08 1.14 4.53 -51.93 -0.24 0.90 16 42 H 0.10 2.56 5.97 -51.93 -0.31 2.25 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 325.16 15.07 4.90 4.90 Total: -1.00 -29.66 325.16 -9.63 -39.29 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -6.94 Total: 1.79 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -2.24 Total: 0.13 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.41 Total: -51.01 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.08 Total: -11.07 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.66 -9.63 -39.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597273505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.001 kcal (2) G-P(sol) polarization free energy of solvation -29.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds