Wall clock time and date at job start Tue Mar 31 2020 00:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00485 * 2 1 4 4 H 1.48504 * 109.46854 * 239.72368 * 3 2 1 5 5 H 1.48495 * 109.46961 * 359.71942 * 3 2 1 6 6 H 1.48496 * 109.47434 * 119.72339 * 3 2 1 7 7 C 1.38816 * 119.99562 * 179.71965 * 2 1 3 8 8 H 1.08001 * 120.00019 * 168.91382 * 7 2 1 9 9 N 1.36937 * 120.00067 * 348.91404 * 7 2 1 10 10 C 1.46966 * 120.59324 * 149.01427 * 9 7 2 11 11 C 1.53813 * 108.39675 * 124.76036 * 10 9 7 12 12 N 1.46965 * 108.57958 * 49.63773 * 11 10 9 13 13 C 1.34778 * 120.59113 * 124.67110 * 12 11 10 14 14 O 1.21283 * 120.00433 * 5.43118 * 13 12 11 15 15 C 1.50698 * 119.99755 * 185.43331 * 13 12 11 16 16 H 1.09003 * 109.26339 * 45.35867 * 15 13 12 17 17 C 1.52875 * 109.26812 * 285.85879 * 15 13 12 18 18 C 1.53296 * 108.59094 * 184.84445 * 17 15 13 19 19 C 1.52877 * 108.58566 * 74.44143 * 18 17 15 20 20 C 1.52717 * 110.15031 * 305.47838 * 19 18 17 21 21 H 1.08994 * 115.38895 * 232.82296 * 20 19 18 22 22 C 1.53647 * 116.02747 * 90.19921 * 20 19 18 23 23 C 1.52066 * 120.52190 * 21.47270 * 20 19 18 24 24 H 1.09006 * 115.93155 * 209.99319 * 23 20 19 25 25 C 1.46961 * 118.81269 * 304.64508 * 12 11 10 26 26 C 1.46965 * 120.59499 * 329.29240 * 9 7 2 27 27 H 0.97003 * 119.99065 * 0.28171 * 1 2 3 28 28 H 1.09001 * 109.60910 * 244.54220 * 10 9 7 29 29 H 1.08998 * 109.61211 * 5.05345 * 10 9 7 30 30 H 1.08998 * 109.73900 * 289.84337 * 11 10 9 31 31 H 1.09006 * 109.67168 * 169.38919 * 11 10 9 32 32 H 1.09000 * 109.61186 * 304.57067 * 17 15 13 33 33 H 1.08997 * 109.62014 * 65.10822 * 17 15 13 34 34 H 1.08997 * 109.61888 * 194.17266 * 18 17 15 35 35 H 1.09003 * 109.61862 * 314.71165 * 18 17 15 36 36 H 1.08990 * 109.35653 * 65.68789 * 19 18 17 37 37 H 1.08998 * 109.36009 * 185.41404 * 19 18 17 38 38 H 1.09003 * 117.54417 * 355.69412 * 22 20 19 39 39 H 1.09000 * 117.53910 * 140.86397 * 22 20 19 40 40 H 1.09009 * 109.60870 * 295.48344 * 25 12 11 41 41 H 1.08993 * 109.75016 * 175.05780 * 25 12 11 42 42 H 1.09001 * 109.60773 * 354.95160 * 26 9 7 43 43 H 1.09005 * 109.60932 * 115.28446 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1091 1.6932 -1.2092 5 1 1.2854 2.7463 -0.0069 6 1 3.0990 1.6992 1.2158 7 6 2.0102 -1.2022 0.0059 8 1 3.0751 -1.2119 -0.1739 9 7 1.3446 -2.3759 0.2397 10 6 1.8030 -3.6306 -0.3731 11 6 2.0319 -4.6616 0.7451 12 7 0.8427 -4.6880 1.6083 13 6 0.1876 -5.8432 1.8383 14 8 0.6330 -6.8881 1.4131 15 6 -1.0984 -5.8366 2.6240 16 1 -1.7340 -5.0265 2.2664 17 6 -0.7844 -5.6158 4.1037 18 6 -2.0875 -5.7328 4.9026 19 6 -2.4773 -7.2088 4.9855 20 6 -2.5511 -7.8128 3.5848 21 1 -3.4827 -8.3256 3.3455 22 6 -1.2512 -8.4315 3.0480 23 6 -1.8158 -7.1624 2.4235 24 1 -2.2700 -7.2892 1.4407 25 6 0.3810 -3.4324 2.2165 26 6 0.1554 -2.4023 1.1029 27 1 -0.4849 0.8401 -0.0041 28 1 1.0447 -3.9987 -1.0641 29 1 2.7361 -3.4565 -0.9089 30 1 2.9048 -4.3790 1.3335 31 1 2.1889 -5.6479 0.3083 32 1 -0.0771 -6.3719 4.4445 33 1 -0.3576 -4.6225 4.2431 34 1 -1.9378 -5.3369 5.9070 35 1 -2.8765 -5.1736 4.3998 36 1 -1.7327 -7.7467 5.5721 37 1 -3.4509 -7.2988 5.4673 38 1 -0.3561 -8.3358 3.6626 39 1 -1.3318 -9.3553 2.4751 40 1 1.1364 -3.0622 2.9097 41 1 -0.5533 -3.6038 2.7510 42 1 0.0002 -1.4168 1.5420 43 1 -0.7181 -2.6820 0.5138 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597273505.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:59 Heat of formation + Delta-G solvation = -7.077939 kcal Electronic energy + Delta-G solvation = -22837.313358 eV Core-core repulsion = 19689.795277 eV Total energy + Delta-G solvation = -3147.518081 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = -0.07 seconds Orbital eigenvalues (eV) -41.71938 -39.73234 -38.23657 -35.67144 -34.18843 -33.20577 -32.25702 -31.43210 -28.69048 -26.37866 -25.25023 -24.57664 -23.47021 -22.78256 -21.77282 -20.30099 -19.26319 -18.70639 -17.70993 -17.36089 -16.93563 -16.53347 -16.12536 -15.48108 -15.30883 -15.10026 -14.91956 -14.74327 -14.65664 -14.29556 -13.89297 -13.64994 -13.36196 -13.14559 -12.88095 -12.66656 -12.49854 -12.31096 -12.23585 -12.09745 -12.00171 -11.87398 -11.75822 -11.66912 -11.26326 -11.04816 -10.62058 -10.60073 -10.35329 -9.79001 -8.61704 -7.87510 -5.41188 1.50183 1.50928 1.58127 1.65535 2.04086 2.51048 2.87368 3.27838 3.54435 3.59162 3.66436 3.77475 4.02154 4.05777 4.21539 4.22620 4.28168 4.29023 4.36451 4.50938 4.55001 4.59223 4.63637 4.68920 4.71061 4.78457 4.81760 4.94592 5.05028 5.08650 5.10244 5.19855 5.24789 5.31907 5.34238 5.38433 5.51047 5.56485 5.61135 5.68540 6.37804 6.53243 7.12061 7.21820 7.77814 8.32504 9.16596 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030342 B = 0.004475 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.600889 B = 6255.123573 C = 6812.601464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.042 4.042 3 Si 0.971 3.029 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.269 4.269 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.133 3.867 11 C 0.106 3.894 12 N -0.603 5.603 13 C 0.512 3.488 14 O -0.580 6.580 15 C -0.068 4.068 16 H 0.100 0.900 17 C -0.112 4.112 18 C -0.113 4.113 19 C -0.089 4.089 20 C -0.127 4.127 21 H 0.116 0.884 22 C -0.167 4.167 23 C -0.139 4.139 24 H 0.087 0.913 25 C 0.095 3.905 26 C 0.162 3.838 27 H 0.253 0.747 28 H 0.008 0.992 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.107 0.893 42 H 0.079 0.921 43 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.055 -11.524 11.283 16.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.238 4.238 3 Si 0.799 3.201 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.399 4.399 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.007 3.993 11 C -0.019 4.019 12 N -0.335 5.335 13 C 0.301 3.699 14 O -0.461 6.461 15 C -0.089 4.089 16 H 0.118 0.882 17 C -0.150 4.150 18 C -0.151 4.151 19 C -0.127 4.127 20 C -0.145 4.145 21 H 0.134 0.866 22 C -0.204 4.204 23 C -0.158 4.158 24 H 0.106 0.894 25 C -0.029 4.029 26 C 0.036 3.964 27 H 0.062 0.938 28 H 0.026 0.974 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.125 0.875 42 H 0.097 0.903 43 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -4.907 -11.919 11.045 16.974 hybrid contribution 0.522 1.020 -0.845 1.424 sum -4.385 -10.899 10.200 15.558 Atomic orbital electron populations 1.70095 1.06584 1.26142 1.55124 1.25875 0.96165 1.01416 1.00364 0.85296 0.77507 0.78994 0.78311 1.20501 1.21891 1.20090 1.19492 0.91400 0.84971 1.44010 0.91503 1.44220 1.31923 1.03709 1.53391 1.21439 0.98050 0.86657 0.93204 1.22053 0.87306 0.99798 0.92720 1.48145 1.28998 1.08253 1.48130 1.21217 0.86306 0.82466 0.79886 1.90601 1.69404 1.31942 1.54112 1.20609 0.92551 0.98701 0.97026 0.88200 1.21696 0.99511 1.02518 0.91276 1.21579 0.95936 0.96914 1.00625 1.21120 1.02821 0.95232 0.93488 1.22433 0.95884 1.02058 0.94102 0.86588 1.22912 0.97239 0.96299 1.03957 1.21390 1.03738 0.92885 0.97805 0.89439 1.22555 1.00595 0.83544 0.96197 1.21070 0.87339 0.97878 0.90152 0.93805 0.97415 0.90994 0.91454 0.89936 0.92126 0.90389 0.89656 0.90954 0.91389 0.89522 0.89929 0.89303 0.91411 0.87540 0.90267 0.98389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.83 10.99 21.65 0.24 -52.59 16 2 C -0.04 -2.27 5.05 84.86 0.43 -1.85 16 3 Si 0.97 43.17 29.57 68.60 2.03 45.20 16 4 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.27 -14.33 9.58 84.03 0.81 -13.53 16 8 H 0.07 3.47 7.85 -2.91 -0.02 3.45 16 9 N -0.61 -30.02 2.96 -697.34 -2.06 -32.08 16 10 C 0.13 5.69 6.70 86.56 0.58 6.27 16 11 C 0.11 3.95 6.60 86.56 0.57 4.52 16 12 N -0.60 -21.74 2.95 -817.16 -2.41 -24.15 16 13 C 0.51 17.75 6.90 87.66 0.60 18.35 16 14 O -0.58 -23.32 14.90 -3.04 -0.05 -23.36 16 15 C -0.07 -1.81 1.75 -11.89 -0.02 -1.84 16 16 H 0.10 2.63 7.17 -2.39 -0.02 2.62 16 17 C -0.11 -2.43 4.61 30.65 0.14 -2.29 16 18 C -0.11 -1.84 5.93 30.65 0.18 -1.65 16 19 C -0.09 -1.37 5.83 30.46 0.18 -1.19 16 20 C -0.13 -2.40 6.19 -10.98 -0.07 -2.47 16 21 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 22 C -0.17 -4.01 8.86 30.58 0.27 -3.74 16 23 C -0.14 -3.53 4.85 -11.64 -0.06 -3.59 16 24 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 25 C 0.09 3.31 5.60 86.41 0.48 3.79 16 26 C 0.16 7.40 5.47 86.41 0.47 7.87 16 27 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 28 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.07 2.93 7.93 -2.39 -0.02 2.91 16 30 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.08 3.05 7.02 -2.38 -0.02 3.03 16 32 H 0.06 1.41 7.11 -2.39 -0.02 1.39 16 33 H 0.08 1.66 6.02 -2.39 -0.01 1.64 16 34 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.16 8.04 -2.39 -0.02 1.15 16 36 H 0.07 1.03 8.06 -2.39 -0.02 1.01 16 37 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 2.14 7.26 -2.39 -0.02 2.12 16 39 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 41 H 0.11 3.04 4.53 -2.39 -0.01 3.02 16 42 H 0.08 4.01 5.97 -2.39 -0.01 4.00 16 43 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 Total: -1.00 -63.86 325.16 3.31 -60.55 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.99 Total: 17.75 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 4.57 Total: 8.67 kcal Atomic # 7 Polarization: -104.59 SS G_CDS: -4.23 Total: -108.82 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.05 Total: -23.36 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -63.86 3.31 -60.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597273505.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.476 kcal (2) G-P(sol) polarization free energy of solvation -63.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.07 seconds