Wall clock time and date at job start Tue Mar 31 2020 00:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86793 * 120.00309 * 2 1 4 4 H 1.48504 * 109.46928 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47612 * 239.99957 * 3 2 1 6 6 H 1.48507 * 109.47430 * 119.99707 * 3 2 1 7 7 C 1.38813 * 120.00032 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00025 * 214.78088 * 7 2 1 9 9 N 1.36936 * 120.00299 * 34.77170 * 7 2 1 10 10 C 1.46966 * 120.58766 * 24.42358 * 9 7 2 11 11 C 1.53819 * 108.39742 * 124.75693 * 10 9 7 12 12 N 1.46961 * 108.57996 * 49.63613 * 11 10 9 13 13 C 1.34767 * 120.59407 * 124.62671 * 12 11 10 14 14 O 1.21285 * 120.00044 * 175.69094 * 13 12 11 15 15 C 1.50695 * 120.00294 * 355.69474 * 13 12 11 16 16 H 1.08996 * 109.35897 * 32.81559 * 15 13 12 17 17 C 1.52877 * 109.35766 * 273.09723 * 15 13 12 18 18 C 1.53298 * 108.58547 * 185.26605 * 17 15 13 19 19 C 1.52882 * 108.58808 * 74.44344 * 18 17 15 20 20 C 1.52073 * 110.51330 * 305.11220 * 19 18 17 21 21 H 1.08993 * 114.63822 * 165.63241 * 20 19 18 22 22 C 1.52311 * 119.83753 * 310.44750 * 20 19 18 23 23 C 1.52069 * 120.02192 * 21.69845 * 20 19 18 24 24 H 1.08998 * 117.25556 * 144.44060 * 23 20 19 25 25 C 1.46968 * 118.80768 * 304.64616 * 12 11 10 26 26 C 1.46959 * 120.59758 * 204.69685 * 9 7 2 27 27 H 0.97000 * 120.00187 * 185.17299 * 1 2 3 28 28 H 1.09004 * 109.61199 * 244.53675 * 10 9 7 29 29 H 1.08999 * 109.61081 * 5.04892 * 10 9 7 30 30 H 1.08999 * 109.73799 * 289.84334 * 11 10 9 31 31 H 1.08998 * 109.53152 * 169.30518 * 11 10 9 32 32 H 1.09006 * 109.61974 * 304.99626 * 17 15 13 33 33 H 1.09005 * 109.61947 * 65.53540 * 17 15 13 34 34 H 1.08999 * 109.61659 * 194.16958 * 18 17 15 35 35 H 1.08994 * 109.61806 * 314.71794 * 18 17 15 36 36 H 1.09000 * 109.26650 * 65.37980 * 19 18 17 37 37 H 1.09000 * 109.26454 * 184.87976 * 19 18 17 38 38 H 1.08995 * 117.53546 * 217.19477 * 22 20 19 39 39 H 1.09002 * 117.54030 * 2.44963 * 22 20 19 40 40 H 1.09001 * 109.61433 * 295.47924 * 25 12 11 41 41 H 1.09001 * 109.60433 * 174.97563 * 25 12 11 42 42 H 1.08991 * 109.61083 * 354.95333 * 26 9 7 43 43 H 1.09003 * 109.60843 * 115.29453 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1040 1.6964 -1.2124 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 2.9455 -1.2859 0.5330 9 7 1.5090 -2.2819 -0.6773 10 6 0.5851 -2.0947 -1.8048 11 6 1.1656 -2.8161 -3.0331 12 7 1.5371 -4.1829 -2.6412 13 6 1.0432 -5.2455 -3.3068 14 8 1.4169 -6.3645 -3.0256 15 6 0.0265 -5.0434 -4.4007 16 1 0.2228 -4.0979 -4.9062 17 6 -1.3747 -5.0101 -3.7903 18 6 -2.4011 -4.9369 -4.9266 19 6 -2.4909 -6.3107 -5.5914 20 6 -1.1154 -6.7741 -6.0452 21 1 -1.0537 -7.8317 -6.3011 22 6 -0.2317 -5.8393 -6.8608 23 6 0.1341 -6.1852 -5.4091 24 1 0.9857 -6.8514 -5.2716 25 6 2.4567 -4.3701 -1.5102 26 6 1.8806 -3.6487 -0.2855 27 1 -0.4850 -0.8366 0.0757 28 1 -0.3878 -2.5179 -1.5547 29 1 0.4800 -1.0312 -2.0190 30 1 2.0483 -2.2847 -3.3889 31 1 0.4150 -2.8531 -3.8225 32 1 -1.5406 -5.9146 -3.2050 33 1 -1.4744 -4.1334 -3.1501 34 1 -3.3753 -4.6615 -4.5227 35 1 -2.0831 -4.1958 -5.6598 36 1 -2.8955 -7.0294 -4.8787 37 1 -3.1525 -6.2496 -6.4555 38 1 0.3739 -6.2812 -7.6520 39 1 -0.6084 -4.8361 -7.0603 40 1 3.4314 -3.9495 -1.7575 41 1 2.5587 -5.4336 -1.2939 42 1 2.6312 -3.6116 0.5039 43 1 0.9984 -4.1790 0.0732 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597273507.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:02 Heat of formation + Delta-G solvation = 5.048658 kcal Electronic energy + Delta-G solvation = -22867.027543 eV Core-core repulsion = 19720.035312 eV Total energy + Delta-G solvation = -3146.992232 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.51650 -38.69771 -36.85987 -34.11960 -33.20633 -31.87057 -30.76753 -30.10683 -26.89943 -25.24517 -23.53149 -23.06507 -22.71606 -21.57376 -20.42488 -18.90113 -18.32093 -17.58640 -16.58933 -16.27696 -15.14396 -14.94163 -14.46327 -14.29549 -14.06580 -13.79241 -13.63967 -13.46707 -13.43395 -13.29657 -12.80124 -12.56763 -12.08631 -11.83723 -11.50987 -11.30637 -11.17385 -11.03788 -10.78807 -10.68386 -10.60497 -10.41300 -10.38896 -10.05350 -9.97258 -9.73611 -9.58652 -9.24529 -8.55244 -8.21670 -6.98296 -6.23761 -3.25868 2.90950 3.34437 3.45788 3.49721 3.67483 3.67955 4.48400 4.51792 4.55809 4.69564 4.89506 4.97941 5.02157 5.11826 5.13050 5.27283 5.30422 5.37763 5.50384 5.60490 5.66724 5.68977 5.71269 5.81853 5.87656 5.94301 5.97694 5.98376 6.04353 6.11391 6.15637 6.18902 6.21871 6.31827 6.32370 6.60358 6.73246 6.88491 7.02607 7.83143 7.92238 8.45273 8.51020 8.97694 9.73839 10.18356 11.05628 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026711 B = 0.004665 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.994900 B = 6000.465921 C = 6476.549233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.017 4.017 3 Si 1.054 2.946 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.364 4.364 8 H 0.059 0.941 9 N -0.596 5.596 10 C 0.140 3.860 11 C 0.084 3.916 12 N -0.597 5.597 13 C 0.517 3.483 14 O -0.556 6.556 15 C -0.075 4.075 16 H 0.094 0.906 17 C -0.108 4.108 18 C -0.119 4.119 19 C -0.089 4.089 20 C -0.136 4.136 21 H 0.097 0.903 22 C -0.185 4.185 23 C -0.128 4.128 24 H 0.112 0.888 25 C 0.096 3.904 26 C 0.134 3.866 27 H 0.268 0.732 28 H 0.022 0.978 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.010 -9.159 -12.201 15.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.220 4.220 3 Si 0.883 3.117 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.492 4.492 8 H 0.077 0.923 9 N -0.320 5.320 10 C 0.013 3.987 11 C -0.041 4.041 12 N -0.329 5.329 13 C 0.305 3.695 14 O -0.435 6.435 15 C -0.096 4.096 16 H 0.112 0.888 17 C -0.146 4.146 18 C -0.157 4.157 19 C -0.126 4.126 20 C -0.155 4.155 21 H 0.115 0.885 22 C -0.222 4.222 23 C -0.147 4.147 24 H 0.130 0.870 25 C -0.028 4.028 26 C 0.007 3.993 27 H 0.078 0.922 28 H 0.040 0.960 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -2.958 -8.052 -12.068 14.806 hybrid contribution 0.334 -1.613 0.120 1.651 sum -2.624 -9.664 -11.949 15.590 Atomic orbital electron populations 1.70818 1.06934 1.30052 1.45885 1.25744 0.96039 1.01444 0.98808 0.83694 0.75218 0.76371 0.76413 1.21128 1.22005 1.21896 1.19913 1.04228 0.91063 1.33986 0.92297 1.44095 1.54581 1.00798 1.32487 1.21377 0.91468 1.00082 0.85805 1.22642 1.00289 0.81919 0.99214 1.48034 1.46252 1.06393 1.32195 1.20479 0.81756 0.84320 0.82927 1.90618 1.61207 1.23838 1.67885 1.20800 0.95155 0.99073 0.94549 0.88808 1.21511 0.91952 1.03200 0.97889 1.21598 0.99215 0.97211 0.97627 1.20861 0.94667 0.97005 1.00052 1.21817 0.91933 0.98390 1.03315 0.88472 1.23171 1.03925 1.00760 0.94363 1.22027 0.99906 1.00117 0.92650 0.86999 1.22184 0.92289 1.01067 0.87246 1.21278 0.97677 0.86592 0.93770 0.92177 0.96030 0.89230 0.91410 0.90603 0.91067 0.90836 0.91181 0.91601 0.91426 0.91567 0.89003 0.88672 0.91883 0.89989 0.91429 0.96175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.71 12.47 55.49 0.69 -25.02 16 2 C -0.02 -0.46 4.41 -17.43 -0.08 -0.54 16 3 Si 1.05 24.17 30.03 -169.99 -5.11 19.06 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.36 -9.78 9.40 -15.06 -0.14 -9.92 16 8 H 0.06 1.61 8.01 -52.49 -0.42 1.19 16 9 N -0.60 -14.34 2.85 -171.77 -0.49 -14.83 16 10 C 0.14 3.03 5.15 -3.36 -0.02 3.01 16 11 C 0.08 1.47 6.45 -3.36 -0.02 1.45 16 12 N -0.60 -10.79 2.95 -172.22 -0.51 -11.30 16 13 C 0.52 9.03 6.75 -10.99 -0.07 8.96 16 14 O -0.56 -11.25 15.24 5.55 0.08 -11.16 16 15 C -0.07 -1.03 1.67 -91.98 -0.15 -1.18 16 16 H 0.09 1.19 6.03 -51.93 -0.31 0.88 16 17 C -0.11 -1.39 5.13 -26.64 -0.14 -1.52 16 18 C -0.12 -1.22 5.71 -26.64 -0.15 -1.37 16 19 C -0.09 -0.85 5.93 -27.26 -0.16 -1.01 16 20 C -0.14 -1.44 6.00 -91.92 -0.55 -2.00 16 21 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 22 C -0.19 -1.89 9.66 -26.74 -0.26 -2.15 16 23 C -0.13 -1.64 5.36 -90.90 -0.49 -2.12 16 24 H 0.11 1.63 7.26 -51.93 -0.38 1.25 16 25 C 0.10 1.80 6.58 -3.60 -0.02 1.78 16 26 C 0.13 2.82 6.67 -3.60 -0.02 2.79 16 27 H 0.27 7.81 7.53 -40.82 -0.31 7.50 16 28 H 0.02 0.48 8.13 -51.93 -0.42 0.06 16 29 H 0.09 2.14 6.28 -51.93 -0.33 1.82 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.08 1.11 5.31 -51.93 -0.28 0.83 16 32 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 33 H 0.07 1.01 8.07 -51.93 -0.42 0.59 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.64 7.11 -51.93 -0.37 0.27 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.09 0.91 7.26 -51.93 -0.38 0.53 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.08 1.51 7.01 -51.93 -0.36 1.15 16 42 H 0.07 1.39 7.92 -51.93 -0.41 0.98 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 328.82 15.07 4.96 4.96 Total: -1.00 -30.21 328.82 -9.63 -39.84 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.98 Total: 2.28 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -2.28 Total: -3.81 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.30 Total: -51.15 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.08 Total: -11.16 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.11 Total: 19.06 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.21 -9.63 -39.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597273507.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.884 kcal (2) G-P(sol) polarization free energy of solvation -30.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds