Wall clock time and date at job start Tue Mar 31 2020 00:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86793 * 120.00309 * 2 1 4 4 H 1.48504 * 109.46928 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47612 * 239.99957 * 3 2 1 6 6 H 1.48507 * 109.47430 * 119.99707 * 3 2 1 7 7 C 1.38813 * 120.00032 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00025 * 214.78088 * 7 2 1 9 9 N 1.36936 * 120.00299 * 34.77170 * 7 2 1 10 10 C 1.46966 * 120.58766 * 24.42358 * 9 7 2 11 11 C 1.53819 * 108.39742 * 124.75693 * 10 9 7 12 12 N 1.46961 * 108.57996 * 49.63613 * 11 10 9 13 13 C 1.34767 * 120.59407 * 124.62671 * 12 11 10 14 14 O 1.21285 * 120.00044 * 175.69094 * 13 12 11 15 15 C 1.50695 * 120.00294 * 355.69474 * 13 12 11 16 16 H 1.08996 * 109.35897 * 32.81559 * 15 13 12 17 17 C 1.52877 * 109.35766 * 273.09723 * 15 13 12 18 18 C 1.53298 * 108.58547 * 185.26605 * 17 15 13 19 19 C 1.52882 * 108.58808 * 74.44344 * 18 17 15 20 20 C 1.52073 * 110.51330 * 305.11220 * 19 18 17 21 21 H 1.08993 * 114.63822 * 165.63241 * 20 19 18 22 22 C 1.52311 * 119.83753 * 310.44750 * 20 19 18 23 23 C 1.52069 * 120.02192 * 21.69845 * 20 19 18 24 24 H 1.08998 * 117.25556 * 144.44060 * 23 20 19 25 25 C 1.46968 * 118.80768 * 304.64616 * 12 11 10 26 26 C 1.46959 * 120.59758 * 204.69685 * 9 7 2 27 27 H 0.97000 * 120.00187 * 185.17299 * 1 2 3 28 28 H 1.09004 * 109.61199 * 244.53675 * 10 9 7 29 29 H 1.08999 * 109.61081 * 5.04892 * 10 9 7 30 30 H 1.08999 * 109.73799 * 289.84334 * 11 10 9 31 31 H 1.08998 * 109.53152 * 169.30518 * 11 10 9 32 32 H 1.09006 * 109.61974 * 304.99626 * 17 15 13 33 33 H 1.09005 * 109.61947 * 65.53540 * 17 15 13 34 34 H 1.08999 * 109.61659 * 194.16958 * 18 17 15 35 35 H 1.08994 * 109.61806 * 314.71794 * 18 17 15 36 36 H 1.09000 * 109.26650 * 65.37980 * 19 18 17 37 37 H 1.09000 * 109.26454 * 184.87976 * 19 18 17 38 38 H 1.08995 * 117.53546 * 217.19477 * 22 20 19 39 39 H 1.09002 * 117.54030 * 2.44963 * 22 20 19 40 40 H 1.09001 * 109.61433 * 295.47924 * 25 12 11 41 41 H 1.09001 * 109.60433 * 174.97563 * 25 12 11 42 42 H 1.08991 * 109.61083 * 354.95333 * 26 9 7 43 43 H 1.09003 * 109.60843 * 115.29453 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1040 1.6964 -1.2124 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 2.9455 -1.2859 0.5330 9 7 1.5090 -2.2819 -0.6773 10 6 0.5851 -2.0947 -1.8048 11 6 1.1656 -2.8161 -3.0331 12 7 1.5371 -4.1829 -2.6412 13 6 1.0432 -5.2455 -3.3068 14 8 1.4169 -6.3645 -3.0256 15 6 0.0265 -5.0434 -4.4007 16 1 0.2228 -4.0979 -4.9062 17 6 -1.3747 -5.0101 -3.7903 18 6 -2.4011 -4.9369 -4.9266 19 6 -2.4909 -6.3107 -5.5914 20 6 -1.1154 -6.7741 -6.0452 21 1 -1.0537 -7.8317 -6.3011 22 6 -0.2317 -5.8393 -6.8608 23 6 0.1341 -6.1852 -5.4091 24 1 0.9857 -6.8514 -5.2716 25 6 2.4567 -4.3701 -1.5102 26 6 1.8806 -3.6487 -0.2855 27 1 -0.4850 -0.8366 0.0757 28 1 -0.3878 -2.5179 -1.5547 29 1 0.4800 -1.0312 -2.0190 30 1 2.0483 -2.2847 -3.3889 31 1 0.4150 -2.8531 -3.8225 32 1 -1.5406 -5.9146 -3.2050 33 1 -1.4744 -4.1334 -3.1501 34 1 -3.3753 -4.6615 -4.5227 35 1 -2.0831 -4.1958 -5.6598 36 1 -2.8955 -7.0294 -4.8787 37 1 -3.1525 -6.2496 -6.4555 38 1 0.3739 -6.2812 -7.6520 39 1 -0.6084 -4.8361 -7.0603 40 1 3.4314 -3.9495 -1.7575 41 1 2.5587 -5.4336 -1.2939 42 1 2.6312 -3.6116 0.5039 43 1 0.9984 -4.1790 0.0732 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597273507.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:01 Heat of formation + Delta-G solvation = -11.206123 kcal Electronic energy + Delta-G solvation = -22867.732404 eV Core-core repulsion = 19720.035312 eV Total energy + Delta-G solvation = -3147.697092 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.74546 -39.89683 -38.49199 -35.85523 -34.23786 -33.34656 -32.28312 -31.58080 -28.60318 -26.35439 -25.29422 -24.60956 -23.65053 -22.84362 -21.77837 -20.36974 -19.36118 -19.25389 -18.09129 -17.52437 -16.44470 -16.35178 -16.17741 -15.79169 -15.45843 -15.22831 -15.10360 -14.83342 -14.72777 -14.53826 -14.00355 -13.86890 -13.52413 -12.96905 -12.90860 -12.60635 -12.57537 -12.36811 -12.27411 -12.16415 -12.10079 -11.90646 -11.86988 -11.51686 -11.35060 -10.90452 -10.63191 -10.54001 -10.45125 -9.94041 -8.93941 -8.34532 -5.36113 1.51882 1.62167 1.67106 1.87570 1.93187 2.65221 2.82101 3.10426 3.35202 3.43381 3.58250 3.80927 3.95939 4.00430 4.06112 4.15398 4.19825 4.22577 4.22986 4.29717 4.43224 4.45050 4.50573 4.56815 4.64356 4.67796 4.80456 4.86621 4.91393 4.98118 4.98566 5.10399 5.15459 5.16581 5.23926 5.31518 5.37166 5.41676 5.46446 5.83178 6.31189 6.40515 6.96068 7.08731 7.72256 8.16486 8.90719 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026711 B = 0.004665 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.994900 B = 6000.465921 C = 6476.549233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.061 4.061 3 Si 1.106 2.894 4 H -0.291 1.291 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.372 4.372 8 H 0.051 0.949 9 N -0.612 5.612 10 C 0.145 3.855 11 C 0.099 3.901 12 N -0.602 5.602 13 C 0.514 3.486 14 O -0.586 6.586 15 C -0.066 4.066 16 H 0.109 0.891 17 C -0.106 4.106 18 C -0.114 4.114 19 C -0.088 4.088 20 C -0.132 4.132 21 H 0.102 0.898 22 C -0.165 4.165 23 C -0.156 4.156 24 H 0.088 0.912 25 C 0.106 3.894 26 C 0.135 3.865 27 H 0.252 0.748 28 H 0.010 0.990 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.215 -8.879 -14.445 17.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.259 4.259 3 Si 0.931 3.069 4 H -0.217 1.217 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.501 4.501 8 H 0.068 0.932 9 N -0.337 5.337 10 C 0.019 3.981 11 C -0.025 4.025 12 N -0.334 5.334 13 C 0.304 3.696 14 O -0.467 6.467 15 C -0.087 4.087 16 H 0.127 0.873 17 C -0.144 4.144 18 C -0.151 4.151 19 C -0.125 4.125 20 C -0.150 4.150 21 H 0.120 0.880 22 C -0.201 4.201 23 C -0.174 4.174 24 H 0.106 0.894 25 C -0.018 4.018 26 C 0.009 3.991 27 H 0.061 0.939 28 H 0.028 0.972 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.128 0.872 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -3.157 -7.800 -14.328 16.617 hybrid contribution 0.397 -1.799 0.883 2.043 sum -2.760 -9.599 -13.446 16.750 Atomic orbital electron populations 1.70948 1.07746 1.28979 1.48417 1.27007 0.96070 1.04442 0.98405 0.82983 0.74162 0.72436 0.77351 1.21743 1.20379 1.20635 1.20111 1.03731 0.92192 1.34034 0.93164 1.44331 1.54905 1.01218 1.33256 1.21287 0.90869 0.99151 0.86840 1.22485 1.01108 0.81067 0.97847 1.48124 1.46250 1.06870 1.32125 1.21206 0.81639 0.83485 0.83230 1.90599 1.62207 1.24984 1.68942 1.20819 0.94080 1.00324 0.93437 0.87292 1.21499 0.92433 1.01768 0.98703 1.21597 0.98691 0.98075 0.96756 1.20895 0.94386 0.96408 1.00814 1.21947 0.91655 0.99005 1.02380 0.87960 1.23260 1.02853 1.01378 0.92654 1.21892 1.00769 1.00387 0.94392 0.89398 1.21967 0.92505 1.00724 0.86627 1.21314 0.97252 0.85534 0.95049 0.93893 0.97201 0.91526 0.91047 0.87152 0.92788 0.92033 0.90136 0.90347 0.91654 0.89328 0.87862 0.87356 0.91353 0.89750 0.91427 0.97308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.53 12.47 21.65 0.27 -53.26 16 2 C -0.06 -3.31 4.41 84.86 0.37 -2.93 16 3 Si 1.11 48.59 30.03 68.60 2.06 50.65 16 4 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 6 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.37 -20.17 9.40 84.03 0.79 -19.38 16 8 H 0.05 2.77 8.01 -2.91 -0.02 2.74 16 9 N -0.61 -29.88 2.85 -697.35 -1.99 -31.87 16 10 C 0.15 6.34 5.15 86.57 0.45 6.79 16 11 C 0.10 3.35 6.45 86.57 0.56 3.90 16 12 N -0.60 -21.40 2.95 -817.17 -2.41 -23.81 16 13 C 0.51 17.71 6.75 87.66 0.59 18.30 16 14 O -0.59 -23.84 15.24 -3.05 -0.05 -23.89 16 15 C -0.07 -1.71 1.67 -11.68 -0.02 -1.73 16 16 H 0.11 2.46 6.03 -2.39 -0.01 2.44 16 17 C -0.11 -2.60 5.13 30.65 0.16 -2.44 16 18 C -0.11 -2.01 5.71 30.65 0.17 -1.84 16 19 C -0.09 -1.42 5.93 30.25 0.18 -1.24 16 20 C -0.13 -2.45 6.00 -11.63 -0.07 -2.52 16 21 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 22 C -0.16 -2.82 9.66 30.59 0.30 -2.53 16 23 C -0.16 -3.72 5.36 -10.98 -0.06 -3.78 16 24 H 0.09 2.54 7.26 -2.39 -0.02 2.52 16 25 C 0.11 3.97 6.58 86.41 0.57 4.54 16 26 C 0.13 5.78 6.67 86.42 0.58 6.35 16 27 H 0.25 15.11 7.53 -92.71 -0.70 14.42 16 28 H 0.01 0.45 8.13 -2.38 -0.02 0.43 16 29 H 0.07 3.23 6.28 -2.39 -0.01 3.21 16 30 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.11 2.96 5.31 -2.39 -0.01 2.95 16 32 H 0.05 1.50 8.04 -2.38 -0.02 1.48 16 33 H 0.06 1.64 8.07 -2.38 -0.02 1.62 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.08 1.22 7.11 -2.39 -0.02 1.20 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.11 1.60 7.26 -2.39 -0.02 1.58 16 40 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.08 3.12 7.01 -2.39 -0.02 3.11 16 42 H 0.07 2.84 7.92 -2.39 -0.02 2.82 16 43 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -65.74 328.82 3.51 -62.22 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 1.06 Total: 18.48 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 4.56 Total: 1.48 kcal Atomic # 7 Polarization: -104.82 SS G_CDS: -4.12 Total: -108.94 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.05 Total: -23.89 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.06 Total: 50.65 kcal Total: -65.74 3.51 -62.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597273507.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.017 kcal (2) G-P(sol) polarization free energy of solvation -65.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds