Wall clock time and date at job start Tue Mar 31 2020 00:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00235 * 2 1 4 4 H 1.48506 * 109.47372 * 275.35814 * 3 2 1 5 5 H 1.48502 * 109.47358 * 35.35795 * 3 2 1 6 6 H 1.48500 * 109.47276 * 155.35942 * 3 2 1 7 7 C 1.38812 * 119.99691 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00070 * 39.41331 * 7 2 1 9 9 N 1.36935 * 119.99771 * 219.68519 * 7 2 1 10 10 C 1.46961 * 120.59241 * 21.35088 * 9 7 2 11 11 C 1.53808 * 108.40083 * 124.75842 * 10 9 7 12 12 N 1.46968 * 108.58180 * 49.63492 * 11 10 9 13 13 C 1.34773 * 120.59920 * 124.62700 * 12 11 10 14 14 O 1.21279 * 120.00418 * 176.09965 * 13 12 11 15 15 C 1.50705 * 119.99792 * 356.09658 * 13 12 11 16 16 C 1.51850 * 108.65013 * 280.40915 * 15 13 12 17 17 C 1.53023 * 110.73425 * 172.27282 * 16 15 13 18 18 C 1.51375 * 108.52428 * 85.89789 * 17 16 15 19 19 C 1.29518 * 120.36147 * 288.10667 * 18 17 16 20 20 C 1.51368 * 120.36167 * 359.97434 * 19 18 17 21 21 C 1.51846 * 108.65229 * 156.44024 * 15 13 12 22 22 C 1.46972 * 118.80872 * 304.65064 * 12 11 10 23 23 C 1.46968 * 120.59634 * 201.62571 * 9 7 2 24 24 H 0.97006 * 119.99660 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.61005 * 244.53828 * 10 9 7 26 26 H 1.08997 * 109.61466 * 5.04566 * 10 9 7 27 27 H 1.09005 * 109.74243 * 289.85057 * 11 10 9 28 28 H 1.09003 * 109.68210 * 169.38202 * 11 10 9 29 29 H 1.09002 * 108.60141 * 38.42243 * 15 13 12 30 30 H 1.08992 * 109.21875 * 292.72253 * 16 15 13 31 31 H 1.08994 * 109.22013 * 52.07187 * 16 15 13 32 32 H 1.09001 * 109.67591 * 326.18504 * 17 16 15 33 33 H 1.08996 * 109.64708 * 205.60148 * 17 16 15 34 34 H 1.08001 * 119.81436 * 108.08097 * 18 17 16 35 35 H 1.08005 * 119.82164 * 179.97438 * 19 18 17 36 36 H 1.08990 * 109.61681 * 312.16238 * 20 19 18 37 37 H 1.09002 * 109.61163 * 191.63757 * 20 19 18 38 38 H 1.08996 * 109.22345 * 307.93772 * 21 15 13 39 39 H 1.09003 * 109.21384 * 67.31778 * 21 15 13 40 40 H 1.08994 * 109.60918 * 295.47877 * 22 12 11 41 41 H 1.08995 * 109.60501 * 174.96672 * 22 12 11 42 42 H 1.09002 * 109.60514 * 354.95751 * 23 9 7 43 43 H 1.09004 * 109.60715 * 115.45467 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3846 2.1118 -1.3940 5 1 1.5090 2.6173 0.8102 6 1 3.5998 1.4100 0.5837 7 6 2.0102 -1.2022 -0.0005 8 1 1.6544 -2.0308 -0.5947 9 7 3.1429 -1.3392 0.7567 10 6 3.3893 -0.4510 1.9013 11 6 3.6137 -1.3198 3.1505 12 7 4.6076 -2.3537 2.8295 13 6 5.7228 -2.4880 3.5742 14 8 6.5011 -3.3891 3.3438 15 6 6.0028 -1.5184 4.6934 16 6 6.5744 -0.2431 4.0994 17 6 6.6985 0.8445 5.1687 18 6 8.0232 0.6705 5.8801 19 6 8.2041 -0.3208 6.6938 20 6 7.0930 -1.3178 6.9441 21 6 6.9265 -2.1874 5.6959 22 6 4.3638 -3.2383 1.6814 23 6 4.1368 -2.3731 0.4357 24 1 -0.4850 0.8401 0.0004 25 1 4.2749 0.1551 1.7101 26 1 2.5260 0.1966 2.0545 27 1 2.6761 -1.7922 3.4437 28 1 3.9821 -0.6996 3.9677 29 1 5.0625 -1.2803 5.1906 30 1 7.5591 -0.4520 3.6813 31 1 5.9158 0.1097 3.3058 32 1 5.8830 0.7490 5.8856 33 1 6.6622 1.8269 4.6981 34 1 8.8220 1.3767 5.7080 35 1 9.1530 -0.4369 7.1965 36 1 6.1632 -0.7863 7.1463 37 1 7.3507 -1.9466 7.7963 38 1 6.5064 -3.1512 5.9833 39 1 7.9021 -2.3442 5.2358 40 1 3.4797 -3.8472 1.8700 41 1 5.2289 -3.8830 1.5263 42 1 3.7672 -2.9952 -0.3795 43 1 5.0744 -1.9007 0.1424 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602102229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:53 Heat of formation + Delta-G solvation = 8.592466 kcal Electronic energy + Delta-G solvation = -22932.875942 eV Core-core repulsion = 19786.037381 eV Total energy + Delta-G solvation = -3146.838561 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.36250 -38.13938 -36.91616 -34.00575 -32.88636 -31.94392 -31.49169 -30.56275 -27.40238 -25.83769 -24.09417 -23.52804 -23.24542 -21.48754 -20.22859 -18.58984 -18.13755 -17.34882 -16.51071 -16.26488 -15.53362 -15.13249 -14.75191 -14.54031 -14.26285 -13.83054 -13.62489 -13.46514 -13.22709 -13.05707 -12.81153 -12.41483 -12.20157 -12.15327 -11.92191 -11.72386 -11.35775 -11.09404 -10.85489 -10.74199 -10.66973 -10.46439 -10.40733 -10.35084 -10.22134 -9.49556 -9.46645 -9.04661 -8.75834 -8.21562 -7.11805 -6.13674 -3.26765 2.17668 2.89386 3.29243 3.35053 3.45281 3.50911 4.47723 4.48175 4.59826 4.73905 4.79748 4.91879 5.02143 5.02644 5.17969 5.31361 5.35731 5.44412 5.49649 5.58705 5.61313 5.68116 5.68469 5.81229 5.88262 5.89880 5.99981 6.03044 6.07909 6.12081 6.15198 6.25982 6.30803 6.47388 6.53543 6.56096 6.72959 6.79177 6.93090 7.78157 7.81390 8.18702 8.47243 8.83538 9.63653 10.02258 10.99972 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022474 B = 0.005416 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.596257 B = 5168.766833 C = 5976.708990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.039 3.961 3 Si 0.828 3.172 4 H -0.293 1.293 5 H -0.293 1.293 6 H -0.258 1.258 7 C -0.276 4.276 8 H 0.085 0.915 9 N -0.599 5.599 10 C 0.133 3.867 11 C 0.082 3.918 12 N -0.598 5.598 13 C 0.512 3.488 14 O -0.556 6.556 15 C -0.103 4.103 16 C -0.106 4.106 17 C -0.090 4.090 18 C -0.157 4.157 19 C -0.158 4.158 20 C -0.092 4.092 21 C -0.094 4.094 22 C 0.095 3.905 23 C 0.134 3.866 24 H 0.263 0.737 25 H 0.032 0.968 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.520 0.032 12.979 18.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.162 4.162 3 Si 0.654 3.346 4 H -0.221 1.221 5 H -0.220 1.220 6 H -0.183 1.183 7 C -0.403 4.403 8 H 0.102 0.898 9 N -0.322 5.322 10 C 0.007 3.993 11 C -0.042 4.042 12 N -0.330 5.330 13 C 0.300 3.700 14 O -0.435 6.435 15 C -0.124 4.124 16 C -0.144 4.144 17 C -0.127 4.127 18 C -0.175 4.175 19 C -0.176 4.176 20 C -0.129 4.129 21 C -0.131 4.131 22 C -0.029 4.029 23 C 0.007 3.993 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 12.710 -0.389 12.806 18.047 hybrid contribution 0.347 1.204 -0.221 1.273 sum 13.057 0.815 12.585 18.153 Atomic orbital electron populations 1.70178 1.06224 1.26957 1.47991 1.25067 0.94692 0.97384 0.99094 0.87737 0.82265 0.86431 0.78118 1.22087 1.21996 1.18276 1.18788 0.98283 0.97602 1.25652 0.89769 1.44314 1.21785 1.36571 1.29540 1.21756 0.99485 0.92024 0.86077 1.22660 0.91736 0.90464 0.99353 1.48055 1.20636 1.34537 1.29789 1.20694 0.80760 0.85353 0.83181 1.90630 1.47465 1.34730 1.70685 1.21011 1.00908 0.95251 0.95211 1.21264 1.02180 0.92902 0.98061 1.20819 0.95677 0.98811 0.97422 1.22561 0.98330 0.98598 0.98027 1.22542 0.99231 0.96388 0.99457 1.20838 0.97628 0.96689 0.97723 1.21091 1.00328 0.97801 0.93927 1.22198 1.01264 0.92940 0.86477 1.21322 0.92282 0.91187 0.94490 0.92726 0.95000 0.90491 0.90920 0.90463 0.89299 0.91179 0.90728 0.90759 0.91033 0.87649 0.87684 0.90972 0.91337 0.91436 0.90866 0.91542 0.89796 0.90745 0.95672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.42 13.97 55.49 0.78 -24.64 16 2 C 0.04 1.07 4.80 -17.43 -0.08 0.99 16 3 Si 0.83 20.19 26.32 -169.99 -4.47 15.71 16 4 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.26 -5.94 5.00 56.52 0.28 -5.66 16 7 C -0.28 -7.37 9.87 -15.06 -0.15 -7.51 16 8 H 0.08 2.39 8.02 -52.49 -0.42 1.97 16 9 N -0.60 -13.61 2.78 -171.77 -0.48 -14.09 16 10 C 0.13 2.70 4.57 -3.37 -0.02 2.69 16 11 C 0.08 1.36 5.87 -3.37 -0.02 1.34 16 12 N -0.60 -10.19 2.95 -172.21 -0.51 -10.69 16 13 C 0.51 8.42 6.69 -10.98 -0.07 8.34 16 14 O -0.56 -10.72 15.55 5.56 0.09 -10.64 16 15 C -0.10 -1.30 1.29 -92.94 -0.12 -1.42 16 16 C -0.11 -1.29 4.59 -27.30 -0.13 -1.41 16 17 C -0.09 -0.90 5.62 -27.54 -0.15 -1.05 16 18 C -0.16 -1.51 9.34 -35.28 -0.33 -1.84 16 19 C -0.16 -1.48 9.34 -35.29 -0.33 -1.81 16 20 C -0.09 -0.85 5.61 -27.54 -0.15 -1.01 16 21 C -0.09 -1.10 4.29 -27.30 -0.12 -1.21 16 22 C 0.10 1.68 6.59 -3.60 -0.02 1.65 16 23 C 0.13 2.61 6.67 -3.60 -0.02 2.58 16 24 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.03 0.65 6.47 -51.93 -0.34 0.31 16 26 H 0.08 1.67 5.20 -51.93 -0.27 1.40 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.08 1.03 4.99 -51.93 -0.26 0.78 16 29 H 0.09 1.01 6.16 -51.93 -0.32 0.69 16 30 H 0.07 0.91 7.85 -51.93 -0.41 0.50 16 31 H 0.07 0.99 6.75 -51.93 -0.35 0.64 16 32 H 0.07 0.69 6.68 -51.93 -0.35 0.35 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.11 0.91 8.06 -52.49 -0.42 0.48 16 35 H 0.11 0.86 8.06 -52.48 -0.42 0.44 16 36 H 0.07 0.64 6.68 -51.93 -0.35 0.29 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 39 H 0.07 0.96 7.76 -51.93 -0.40 0.56 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.08 1.45 7.01 -51.93 -0.36 1.09 16 42 H 0.07 1.40 7.90 -51.93 -0.41 0.99 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 320.67 15.07 4.83 4.83 Total: -1.00 -30.45 320.67 -8.36 -38.81 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.87 Total: 0.39 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -1.72 Total: 0.32 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.21 Total: -49.43 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.47 Total: 15.71 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.45 -8.36 -38.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602102229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.404 kcal (2) G-P(sol) polarization free energy of solvation -30.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds