Wall clock time and date at job start Tue Mar 31 2020 00:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00235 * 2 1 4 4 H 1.48506 * 109.47372 * 275.35814 * 3 2 1 5 5 H 1.48502 * 109.47358 * 35.35795 * 3 2 1 6 6 H 1.48500 * 109.47276 * 155.35942 * 3 2 1 7 7 C 1.38812 * 119.99691 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00070 * 39.41331 * 7 2 1 9 9 N 1.36935 * 119.99771 * 219.68519 * 7 2 1 10 10 C 1.46961 * 120.59241 * 21.35088 * 9 7 2 11 11 C 1.53808 * 108.40083 * 124.75842 * 10 9 7 12 12 N 1.46968 * 108.58180 * 49.63492 * 11 10 9 13 13 C 1.34773 * 120.59920 * 124.62700 * 12 11 10 14 14 O 1.21279 * 120.00418 * 176.09965 * 13 12 11 15 15 C 1.50705 * 119.99792 * 356.09658 * 13 12 11 16 16 C 1.51850 * 108.65013 * 280.40915 * 15 13 12 17 17 C 1.53023 * 110.73425 * 172.27282 * 16 15 13 18 18 C 1.51375 * 108.52428 * 85.89789 * 17 16 15 19 19 C 1.29518 * 120.36147 * 288.10667 * 18 17 16 20 20 C 1.51368 * 120.36167 * 359.97434 * 19 18 17 21 21 C 1.51846 * 108.65229 * 156.44024 * 15 13 12 22 22 C 1.46972 * 118.80872 * 304.65064 * 12 11 10 23 23 C 1.46968 * 120.59634 * 201.62571 * 9 7 2 24 24 H 0.97006 * 119.99660 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.61005 * 244.53828 * 10 9 7 26 26 H 1.08997 * 109.61466 * 5.04566 * 10 9 7 27 27 H 1.09005 * 109.74243 * 289.85057 * 11 10 9 28 28 H 1.09003 * 109.68210 * 169.38202 * 11 10 9 29 29 H 1.09002 * 108.60141 * 38.42243 * 15 13 12 30 30 H 1.08992 * 109.21875 * 292.72253 * 16 15 13 31 31 H 1.08994 * 109.22013 * 52.07187 * 16 15 13 32 32 H 1.09001 * 109.67591 * 326.18504 * 17 16 15 33 33 H 1.08996 * 109.64708 * 205.60148 * 17 16 15 34 34 H 1.08001 * 119.81436 * 108.08097 * 18 17 16 35 35 H 1.08005 * 119.82164 * 179.97438 * 19 18 17 36 36 H 1.08990 * 109.61681 * 312.16238 * 20 19 18 37 37 H 1.09002 * 109.61163 * 191.63757 * 20 19 18 38 38 H 1.08996 * 109.22345 * 307.93772 * 21 15 13 39 39 H 1.09003 * 109.21384 * 67.31778 * 21 15 13 40 40 H 1.08994 * 109.60918 * 295.47877 * 22 12 11 41 41 H 1.08995 * 109.60501 * 174.96672 * 22 12 11 42 42 H 1.09002 * 109.60514 * 354.95751 * 23 9 7 43 43 H 1.09004 * 109.60715 * 115.45467 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3846 2.1118 -1.3940 5 1 1.5090 2.6173 0.8102 6 1 3.5998 1.4100 0.5837 7 6 2.0102 -1.2022 -0.0005 8 1 1.6544 -2.0308 -0.5947 9 7 3.1429 -1.3392 0.7567 10 6 3.3893 -0.4510 1.9013 11 6 3.6137 -1.3198 3.1505 12 7 4.6076 -2.3537 2.8295 13 6 5.7228 -2.4880 3.5742 14 8 6.5011 -3.3891 3.3438 15 6 6.0028 -1.5184 4.6934 16 6 6.5744 -0.2431 4.0994 17 6 6.6985 0.8445 5.1687 18 6 8.0232 0.6705 5.8801 19 6 8.2041 -0.3208 6.6938 20 6 7.0930 -1.3178 6.9441 21 6 6.9265 -2.1874 5.6959 22 6 4.3638 -3.2383 1.6814 23 6 4.1368 -2.3731 0.4357 24 1 -0.4850 0.8401 0.0004 25 1 4.2749 0.1551 1.7101 26 1 2.5260 0.1966 2.0545 27 1 2.6761 -1.7922 3.4437 28 1 3.9821 -0.6996 3.9677 29 1 5.0625 -1.2803 5.1906 30 1 7.5591 -0.4520 3.6813 31 1 5.9158 0.1097 3.3058 32 1 5.8830 0.7490 5.8856 33 1 6.6622 1.8269 4.6981 34 1 8.8220 1.3767 5.7080 35 1 9.1530 -0.4369 7.1965 36 1 6.1632 -0.7863 7.1463 37 1 7.3507 -1.9466 7.7963 38 1 6.5064 -3.1512 5.9833 39 1 7.9021 -2.3442 5.2358 40 1 3.4797 -3.8472 1.8700 41 1 5.2289 -3.8830 1.5263 42 1 3.7672 -2.9952 -0.3795 43 1 5.0744 -1.9007 0.1424 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602102229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:52 Heat of formation + Delta-G solvation = -9.103799 kcal Electronic energy + Delta-G solvation = -22933.643310 eV Core-core repulsion = 19786.037381 eV Total energy + Delta-G solvation = -3147.605928 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.60309 -39.24714 -38.34721 -35.66318 -34.03052 -33.29574 -32.74312 -32.03092 -29.00085 -26.91871 -25.19948 -24.90916 -24.77515 -22.80247 -21.51613 -20.01912 -18.92820 -18.76609 -17.95541 -17.47306 -16.92161 -16.60443 -16.21417 -16.02516 -15.55213 -15.24535 -14.87900 -14.76333 -14.47799 -14.24347 -14.11728 -13.85731 -13.73266 -13.39038 -13.18926 -12.78695 -12.59872 -12.52471 -12.26740 -12.13054 -12.07719 -11.90847 -11.65995 -11.52569 -11.37342 -11.20844 -10.72182 -10.64991 -9.87831 -9.85545 -8.95075 -8.22936 -5.33412 1.35798 1.45324 1.49313 1.54275 1.61962 1.99719 2.45016 2.90982 3.37118 3.42324 3.63410 3.86608 4.05747 4.09464 4.11853 4.24306 4.27569 4.31110 4.37538 4.44052 4.50320 4.56915 4.62282 4.66347 4.72365 4.75728 4.85253 4.89292 4.94906 4.95190 5.07997 5.13957 5.21433 5.23042 5.32126 5.42106 5.51564 5.82713 5.84740 6.08635 6.09842 6.46223 6.87887 7.14979 7.62895 8.03830 8.94079 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022474 B = 0.005416 C = 0.004684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.596257 B = 5168.766833 C = 5976.708990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.892 3.108 4 H -0.307 1.307 5 H -0.291 1.291 6 H -0.235 1.235 7 C -0.270 4.270 8 H 0.053 0.947 9 N -0.612 5.612 10 C 0.128 3.872 11 C 0.094 3.906 12 N -0.603 5.603 13 C 0.510 3.490 14 O -0.587 6.587 15 C -0.096 4.096 16 C -0.102 4.102 17 C -0.087 4.087 18 C -0.165 4.165 19 C -0.162 4.162 20 C -0.087 4.087 21 C -0.089 4.089 22 C 0.103 3.897 23 C 0.135 3.865 24 H 0.263 0.737 25 H 0.039 0.961 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.117 1.189 15.124 20.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.207 4.207 3 Si 0.719 3.281 4 H -0.236 1.236 5 H -0.218 1.218 6 H -0.158 1.158 7 C -0.398 4.398 8 H 0.071 0.929 9 N -0.336 5.336 10 C 0.002 3.998 11 C -0.030 4.030 12 N -0.334 5.334 13 C 0.300 3.700 14 O -0.467 6.467 15 C -0.117 4.117 16 C -0.140 4.140 17 C -0.124 4.124 18 C -0.183 4.183 19 C -0.180 4.180 20 C -0.124 4.124 21 C -0.127 4.127 22 C -0.021 4.021 23 C 0.009 3.991 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.134 0.866 29 H 0.127 0.873 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 14.352 0.772 14.979 20.760 hybrid contribution -0.118 0.725 -0.926 1.182 sum 14.235 1.497 14.054 20.059 Atomic orbital electron populations 1.70248 1.07752 1.27594 1.50854 1.25534 0.95097 1.00174 0.99899 0.86722 0.82008 0.82161 0.77196 1.23618 1.21757 1.15825 1.18722 0.99182 0.96695 1.25215 0.92944 1.44415 1.21513 1.37553 1.30083 1.21834 0.98987 0.92296 0.86691 1.22532 0.91834 0.90127 0.98498 1.48141 1.21103 1.34479 1.29703 1.21399 0.79720 0.85359 0.83481 1.90618 1.48259 1.36220 1.71642 1.21094 1.02200 0.94458 0.93958 1.21224 1.01091 0.93140 0.98532 1.20809 0.96384 0.98201 0.96999 1.22677 0.98480 0.99059 0.98086 1.22700 0.99699 0.96153 0.99446 1.20821 0.98249 0.96568 0.96771 1.21045 0.98974 0.98075 0.94616 1.21997 1.01313 0.92697 0.86123 1.21385 0.91499 0.90681 0.95555 0.92771 0.94286 0.91899 0.91327 0.86635 0.87259 0.92520 0.91642 0.89552 0.90239 0.86838 0.86665 0.89894 0.89996 0.92033 0.92658 0.91774 0.89399 0.90882 0.95289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.67 13.97 21.65 0.30 -54.37 16 2 C -0.01 -0.48 4.80 84.86 0.41 -0.08 16 3 Si 0.89 41.81 26.32 68.60 1.81 43.62 16 4 H -0.31 -15.06 7.11 99.48 0.71 -14.35 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 6 H -0.23 -9.98 5.00 99.48 0.50 -9.48 16 7 C -0.27 -14.55 9.87 84.03 0.83 -13.72 16 8 H 0.05 3.09 8.02 -2.91 -0.02 3.07 16 9 N -0.61 -27.40 2.78 -697.37 -1.94 -29.33 16 10 C 0.13 4.92 4.57 86.56 0.40 5.31 16 11 C 0.09 2.86 5.87 86.56 0.51 3.37 16 12 N -0.60 -19.38 2.95 -817.16 -2.41 -21.79 16 13 C 0.51 15.80 6.69 87.66 0.59 16.39 16 14 O -0.59 -21.99 15.55 -3.02 -0.05 -22.03 16 15 C -0.10 -2.17 1.29 -12.30 -0.02 -2.19 16 16 C -0.10 -2.18 4.59 30.22 0.14 -2.04 16 17 C -0.09 -1.42 5.62 30.07 0.17 -1.26 16 18 C -0.17 -2.66 9.34 27.38 0.26 -2.40 16 19 C -0.16 -2.54 9.34 27.37 0.26 -2.28 16 20 C -0.09 -1.34 5.61 30.07 0.17 -1.17 16 21 C -0.09 -1.88 4.29 30.22 0.13 -1.75 16 22 C 0.10 3.54 6.59 86.41 0.57 4.10 16 23 C 0.13 5.17 6.67 86.41 0.58 5.75 16 24 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 25 H 0.04 1.47 6.47 -2.39 -0.02 1.45 16 26 H 0.06 2.62 5.20 -2.39 -0.01 2.60 16 27 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 28 H 0.12 2.63 4.99 -2.39 -0.01 2.62 16 29 H 0.11 2.04 6.16 -2.39 -0.01 2.02 16 30 H 0.06 1.37 7.85 -2.39 -0.02 1.35 16 31 H 0.06 1.53 6.75 -2.39 -0.02 1.51 16 32 H 0.09 1.22 6.68 -2.39 -0.02 1.21 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 34 H 0.11 1.62 8.06 -2.91 -0.02 1.60 16 35 H 0.12 1.56 8.06 -2.91 -0.02 1.53 16 36 H 0.08 1.12 6.68 -2.39 -0.02 1.11 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 39 H 0.05 1.37 7.76 -2.39 -0.02 1.35 16 40 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.09 2.97 7.01 -2.39 -0.02 2.95 16 42 H 0.07 2.78 7.90 -2.39 -0.02 2.76 16 43 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -65.72 320.67 3.47 -62.26 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.78 Total: 13.62 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 4.97 Total: 8.04 kcal Atomic # 7 Polarization: -101.45 SS G_CDS: -4.04 Total: -105.50 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.05 Total: -22.03 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 1.81 Total: 43.62 kcal Total: -65.72 3.47 -62.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602102229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.151 kcal (2) G-P(sol) polarization free energy of solvation -65.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds