Wall clock time and date at job start Tue Mar 31 2020 00:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00234 * 2 1 4 4 H 1.48494 * 109.47501 * 270.00342 * 3 2 1 5 5 H 1.48503 * 109.46826 * 30.00606 * 3 2 1 6 6 H 1.48493 * 109.47138 * 150.00005 * 3 2 1 7 7 C 1.37885 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99700 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99926 * 359.72225 * 7 2 1 10 10 N 1.46900 * 109.47052 * 179.97438 * 9 7 2 11 11 C 1.46901 * 111.00157 * 294.30402 * 10 9 7 12 12 C 1.53238 * 109.33972 * 172.74523 * 11 10 9 13 13 N 1.47086 * 108.52278 * 53.82793 * 12 11 10 14 14 C 1.34771 * 120.88105 * 128.83385 * 13 12 11 15 15 O 1.21283 * 120.00033 * 354.60473 * 14 13 12 16 16 C 1.50697 * 120.00090 * 174.60044 * 14 13 12 17 17 C 1.52994 * 119.30088 * 102.06868 * 16 14 13 18 18 C 1.52997 * 60.38305 * 111.30857 * 17 16 14 19 19 H 1.09001 * 119.29998 * 248.70054 * 18 17 16 20 20 C 1.54271 * 118.68692 * 93.34521 * 18 17 16 21 21 C 1.54891 * 104.19669 * 272.18297 * 20 18 17 22 22 C 1.54275 * 117.41425 * 306.41264 * 16 14 13 23 23 C 1.47079 * 118.23567 * 308.81566 * 13 12 11 24 24 C 1.46902 * 110.99976 * 170.00020 * 10 9 7 25 25 H 0.97000 * 120.00279 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47543 * 299.99965 * 9 7 2 27 27 H 1.09001 * 109.47458 * 59.99932 * 9 7 2 28 28 H 1.08997 * 109.48827 * 292.69991 * 11 10 9 29 29 H 1.08996 * 109.49238 * 52.78129 * 11 10 9 30 30 H 1.09002 * 109.63045 * 294.12411 * 12 11 10 31 31 H 1.08992 * 109.79146 * 173.63118 * 12 11 10 32 32 H 1.09005 * 117.46435 * 218.90917 * 17 16 14 33 33 H 1.08998 * 117.46007 * 3.70790 * 17 16 14 34 34 H 1.09000 * 110.48107 * 30.86381 * 20 18 17 35 35 H 1.08994 * 110.48078 * 153.36564 * 20 18 17 36 36 H 1.08995 * 110.75382 * 156.25696 * 21 20 18 37 37 H 1.09003 * 110.75167 * 279.44170 * 21 20 18 38 38 H 1.09000 * 110.48224 * 2.30745 * 22 16 14 39 39 H 1.09000 * 110.48395 * 124.94950 * 22 16 14 40 40 H 1.09002 * 109.62864 * 291.47168 * 23 13 12 41 41 H 1.08998 * 109.78494 * 170.98737 * 23 13 12 42 42 H 1.09001 * 109.49045 * 307.21074 * 24 10 9 43 43 H 1.08993 * 109.49432 * 67.29769 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 7 2.2055 -3.6157 0.0028 11 6 2.9710 -3.6513 -1.2506 12 6 4.0737 -4.7098 -1.1419 13 7 3.4580 -5.9877 -0.7526 14 6 3.7055 -7.1150 -1.4484 15 8 4.3645 -7.0677 -2.4654 16 6 3.1633 -8.4346 -0.9626 17 6 1.9238 -9.0280 -1.6350 18 6 3.2813 -9.7105 -1.8146 19 1 3.7603 -9.6960 -2.7936 20 6 3.6705 -10.8500 -0.8502 21 6 4.3418 -10.1252 0.3428 22 6 3.4851 -8.8433 0.4898 23 6 2.5655 -6.0025 0.4164 24 6 1.5221 -4.8931 0.2463 25 1 -0.4850 0.8400 0.0004 26 1 0.6281 -2.5552 0.8979 27 1 0.6206 -2.5587 -0.8820 28 1 2.3053 -3.9030 -2.0761 29 1 3.4205 -2.6747 -1.4300 30 1 4.7984 -4.4074 -0.3860 31 1 4.5734 -4.8223 -2.1040 32 1 1.1931 -9.5228 -0.9952 33 1 1.5125 -8.4940 -2.4916 34 1 2.7830 -11.3890 -0.5188 35 1 4.3731 -11.5318 -1.3293 36 1 4.2851 -10.7333 1.2456 37 1 5.3774 -9.8767 0.1106 38 1 4.0542 -8.0594 0.9895 39 1 2.5676 -9.0583 1.0377 40 1 3.1453 -5.8242 1.3220 41 1 2.0650 -6.9682 0.4862 42 1 0.9212 -4.8171 1.1525 43 1 0.8767 -5.1275 -0.6001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602200402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:53 Heat of formation + Delta-G solvation = -3.320615 kcal Electronic energy + Delta-G solvation = -22337.737532 eV Core-core repulsion = 19190.382382 eV Total energy + Delta-G solvation = -3147.355151 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.75789 -38.68865 -37.21064 -34.40433 -32.40487 -31.90459 -30.92383 -28.91259 -27.96008 -25.61035 -23.83552 -22.90229 -22.48711 -21.41409 -20.65562 -19.72321 -18.34037 -16.86224 -16.40607 -16.08923 -15.46711 -14.88112 -14.75798 -14.51035 -14.42143 -13.82133 -13.58520 -13.49519 -13.34382 -13.20794 -12.77100 -12.24458 -12.05041 -11.86886 -11.36243 -11.31291 -11.24512 -11.19062 -11.07214 -10.83869 -10.74753 -10.60989 -10.54663 -10.51504 -9.88133 -9.86264 -9.52856 -9.26113 -8.50514 -8.40674 -7.33144 -6.06816 -4.08605 2.62195 3.08229 3.29920 3.36309 3.40376 3.45343 4.19058 4.38559 4.42552 4.50014 4.64663 4.80847 4.98366 5.11112 5.19882 5.28171 5.28841 5.32538 5.42104 5.43512 5.50921 5.56017 5.59439 5.63281 5.70564 5.81778 5.82699 5.84505 5.98658 5.99891 6.04675 6.14510 6.21493 6.42551 6.53490 6.76124 7.21291 7.27483 7.59566 7.74397 8.00398 8.11357 8.32124 8.47261 8.98685 9.56008 11.04035 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.040046 B = 0.003649 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.029612 B = 7672.277240 C = 7857.751467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.052 3.948 12 C 0.114 3.886 13 N -0.602 5.602 14 C 0.555 3.445 15 O -0.550 6.550 16 C -0.174 4.174 17 C -0.124 4.124 18 C -0.131 4.131 19 H 0.117 0.883 20 C -0.095 4.095 21 C -0.123 4.123 22 C -0.084 4.084 23 C 0.114 3.886 24 C 0.040 3.960 25 H 0.262 0.738 26 H 0.032 0.968 27 H -0.009 1.009 28 H 0.024 0.976 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.800 -20.135 1.101 20.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.548 4.548 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.260 5.260 11 C -0.077 4.077 12 C -0.008 4.008 13 N -0.335 5.335 14 C 0.343 3.657 15 O -0.429 6.429 16 C -0.177 4.177 17 C -0.162 4.162 18 C -0.150 4.150 19 H 0.135 0.865 20 C -0.132 4.132 21 C -0.160 4.160 22 C -0.122 4.122 23 C -0.009 4.009 24 C -0.090 4.090 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.009 0.991 28 H 0.042 0.958 29 H 0.115 0.885 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 5.338 -19.881 0.963 20.608 hybrid contribution -0.323 1.038 -0.624 1.254 sum 5.015 -18.843 0.339 19.502 Atomic orbital electron populations 1.69953 1.06095 1.26858 1.50852 1.24992 0.94866 0.99365 0.95342 0.86493 0.79817 0.83027 0.78075 1.20715 1.21251 1.19719 1.21145 0.93500 0.89874 1.50286 0.91793 1.19723 0.89989 0.87220 0.96179 1.62088 1.28190 1.02587 1.33178 1.22320 0.95172 0.99111 0.91076 1.21865 0.95914 0.81716 1.01289 1.48103 1.46951 1.08239 1.30162 1.19362 0.79528 0.83934 0.82856 1.90656 1.41031 1.86475 1.24693 1.22311 1.05727 0.93262 0.96443 1.23104 0.90255 1.00978 1.01827 1.23344 0.99899 0.91814 0.99903 0.86524 1.21976 1.00353 0.96083 0.94836 1.22684 0.99588 0.95797 0.97979 1.21998 1.00182 0.97690 0.92315 1.21950 0.91801 0.99180 0.87930 1.22403 0.94870 0.90842 1.00862 0.92877 0.95043 0.99126 0.95798 0.88511 0.90972 0.89492 0.88021 0.88028 0.91126 0.90997 0.91007 0.91190 0.90626 0.90518 0.90890 0.89805 0.90075 0.95561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.51 -14.01 8.40 -34.44 -0.29 -14.30 16 8 H 0.06 1.73 7.14 -52.48 -0.37 1.36 16 9 C 0.19 4.93 4.72 -4.98 -0.02 4.91 16 10 N -0.54 -11.16 4.62 -235.77 -1.09 -12.25 16 11 C 0.05 1.02 5.46 -3.70 -0.02 1.00 16 12 C 0.11 1.93 6.61 -3.60 -0.02 1.90 16 13 N -0.60 -9.40 3.01 -172.46 -0.52 -9.92 16 14 C 0.56 8.73 7.24 -10.99 -0.08 8.65 16 15 O -0.55 -10.49 16.25 5.55 0.09 -10.40 16 16 C -0.17 -2.05 1.50 -154.54 -0.23 -2.28 16 17 C -0.12 -1.26 9.89 -26.74 -0.26 -1.52 16 18 C -0.13 -1.37 6.54 -89.50 -0.58 -1.96 16 19 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 20 C -0.10 -0.76 6.64 -25.07 -0.17 -0.93 16 21 C -0.12 -1.00 6.91 -24.74 -0.17 -1.18 16 22 C -0.08 -0.79 4.77 -25.07 -0.12 -0.91 16 23 C 0.11 1.58 5.34 -3.60 -0.02 1.56 16 24 C 0.04 0.68 5.62 -3.70 -0.02 0.65 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.03 0.85 7.97 -51.93 -0.41 0.43 16 27 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.10 2.01 6.67 -51.93 -0.35 1.66 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.09 1.48 7.04 -51.93 -0.37 1.12 16 32 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.76 7.24 -51.93 -0.38 0.38 16 39 H 0.08 0.60 8.03 -51.93 -0.42 0.18 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.08 0.95 5.45 -51.93 -0.28 0.66 16 42 H 0.08 1.31 7.99 -51.93 -0.41 0.90 16 43 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 336.65 15.07 5.07 5.07 Total: -1.00 -31.42 336.65 -10.04 -41.46 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -7.20 Total: -1.77 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -2.11 Total: -2.92 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.87 Total: -47.81 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.42 -10.04 -41.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602200402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.143 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds