Wall clock time and date at job start Tue Mar 31 2020 00:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00234 * 2 1 4 4 H 1.48494 * 109.47501 * 270.00342 * 3 2 1 5 5 H 1.48503 * 109.46826 * 30.00606 * 3 2 1 6 6 H 1.48493 * 109.47138 * 150.00005 * 3 2 1 7 7 C 1.37885 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99700 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99926 * 359.72225 * 7 2 1 10 10 N 1.46900 * 109.47052 * 179.97438 * 9 7 2 11 11 C 1.46901 * 111.00157 * 294.30402 * 10 9 7 12 12 C 1.53238 * 109.33972 * 172.74523 * 11 10 9 13 13 N 1.47086 * 108.52278 * 53.82793 * 12 11 10 14 14 C 1.34771 * 120.88105 * 128.83385 * 13 12 11 15 15 O 1.21283 * 120.00033 * 354.60473 * 14 13 12 16 16 C 1.50697 * 120.00090 * 174.60044 * 14 13 12 17 17 C 1.52994 * 119.30088 * 102.06868 * 16 14 13 18 18 C 1.52997 * 60.38305 * 111.30857 * 17 16 14 19 19 H 1.09001 * 119.29998 * 248.70054 * 18 17 16 20 20 C 1.54271 * 118.68692 * 93.34521 * 18 17 16 21 21 C 1.54891 * 104.19669 * 272.18297 * 20 18 17 22 22 C 1.54275 * 117.41425 * 306.41264 * 16 14 13 23 23 C 1.47079 * 118.23567 * 308.81566 * 13 12 11 24 24 C 1.46902 * 110.99976 * 170.00020 * 10 9 7 25 25 H 0.97000 * 120.00279 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47543 * 299.99965 * 9 7 2 27 27 H 1.09001 * 109.47458 * 59.99932 * 9 7 2 28 28 H 1.08997 * 109.48827 * 292.69991 * 11 10 9 29 29 H 1.08996 * 109.49238 * 52.78129 * 11 10 9 30 30 H 1.09002 * 109.63045 * 294.12411 * 12 11 10 31 31 H 1.08992 * 109.79146 * 173.63118 * 12 11 10 32 32 H 1.09005 * 117.46435 * 218.90917 * 17 16 14 33 33 H 1.08998 * 117.46007 * 3.70790 * 17 16 14 34 34 H 1.09000 * 110.48107 * 30.86381 * 20 18 17 35 35 H 1.08994 * 110.48078 * 153.36564 * 20 18 17 36 36 H 1.08995 * 110.75382 * 156.25696 * 21 20 18 37 37 H 1.09003 * 110.75167 * 279.44170 * 21 20 18 38 38 H 1.09000 * 110.48224 * 2.30745 * 22 16 14 39 39 H 1.09000 * 110.48395 * 124.94950 * 22 16 14 40 40 H 1.09002 * 109.62864 * 291.47168 * 23 13 12 41 41 H 1.08998 * 109.78494 * 170.98737 * 23 13 12 42 42 H 1.09001 * 109.49045 * 307.21074 * 24 10 9 43 43 H 1.08993 * 109.49432 * 67.29769 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 7 2.2055 -3.6157 0.0028 11 6 2.9710 -3.6513 -1.2506 12 6 4.0737 -4.7098 -1.1419 13 7 3.4580 -5.9877 -0.7526 14 6 3.7055 -7.1150 -1.4484 15 8 4.3645 -7.0677 -2.4654 16 6 3.1633 -8.4346 -0.9626 17 6 1.9238 -9.0280 -1.6350 18 6 3.2813 -9.7105 -1.8146 19 1 3.7603 -9.6960 -2.7936 20 6 3.6705 -10.8500 -0.8502 21 6 4.3418 -10.1252 0.3428 22 6 3.4851 -8.8433 0.4898 23 6 2.5655 -6.0025 0.4164 24 6 1.5221 -4.8931 0.2463 25 1 -0.4850 0.8400 0.0004 26 1 0.6281 -2.5552 0.8979 27 1 0.6206 -2.5587 -0.8820 28 1 2.3053 -3.9030 -2.0761 29 1 3.4205 -2.6747 -1.4300 30 1 4.7984 -4.4074 -0.3860 31 1 4.5734 -4.8223 -2.1040 32 1 1.1931 -9.5228 -0.9952 33 1 1.5125 -8.4940 -2.4916 34 1 2.7830 -11.3890 -0.5188 35 1 4.3731 -11.5318 -1.3293 36 1 4.2851 -10.7333 1.2456 37 1 5.3774 -9.8767 0.1106 38 1 4.0542 -8.0594 0.9895 39 1 2.5676 -9.0583 1.0377 40 1 3.1453 -5.8242 1.3220 41 1 2.0650 -6.9682 0.4862 42 1 0.9212 -4.8171 1.1525 43 1 0.8767 -5.1275 -0.6001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602200402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:52 Heat of formation + Delta-G solvation = -23.115501 kcal Electronic energy + Delta-G solvation = -22338.595903 eV Core-core repulsion = 19190.382382 eV Total energy + Delta-G solvation = -3148.213521 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.81448 -39.86717 -38.59584 -36.02481 -34.40358 -32.64392 -32.27223 -30.30860 -29.14697 -27.33495 -25.12361 -24.21170 -23.74146 -22.83755 -21.50390 -20.92872 -19.49749 -18.51636 -17.92396 -17.37751 -16.66728 -16.48857 -16.03696 -15.88390 -15.63085 -15.40101 -15.24110 -14.44853 -14.27190 -14.12356 -14.09867 -13.90625 -13.52514 -13.08277 -12.80275 -12.77896 -12.60449 -12.38066 -12.33957 -12.23994 -12.01926 -11.93643 -11.82354 -11.71698 -11.35476 -11.31241 -10.69810 -10.64706 -10.61485 -9.80458 -9.08940 -8.22046 -6.31932 1.41622 1.42148 1.44733 1.53977 1.88796 2.39592 2.58463 3.10086 3.19944 3.39092 3.53053 3.64142 3.87906 3.97321 4.03966 4.20080 4.25222 4.27093 4.38974 4.44178 4.49863 4.54927 4.64934 4.71467 4.74195 4.80917 4.82124 4.88928 4.97760 5.00107 5.02291 5.14652 5.18167 5.21355 5.22801 5.29284 5.44993 5.48788 5.62671 6.01397 6.18066 6.39912 6.56398 6.83387 7.07751 7.37861 8.89133 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.040046 B = 0.003649 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.029612 B = 7672.277240 C = 7857.751467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.968 3.032 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.524 4.524 8 H 0.065 0.935 9 C 0.209 3.791 10 N -0.537 5.537 11 C 0.059 3.941 12 C 0.124 3.876 13 N -0.606 5.606 14 C 0.549 3.451 15 O -0.592 6.592 16 C -0.189 4.189 17 C -0.113 4.113 18 C -0.133 4.133 19 H 0.094 0.906 20 C -0.088 4.088 21 C -0.121 4.121 22 C -0.081 4.081 23 C 0.125 3.875 24 C 0.036 3.964 25 H 0.265 0.735 26 H 0.013 0.987 27 H -0.043 1.043 28 H 0.006 0.994 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.133 0.867 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.118 0.882 42 H 0.092 0.908 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.282 -21.842 2.695 22.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.195 4.195 3 Si 0.793 3.207 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.563 4.563 8 H 0.083 0.917 9 C 0.082 3.918 10 N -0.262 5.262 11 C -0.070 4.070 12 C 0.001 3.999 13 N -0.337 5.337 14 C 0.339 3.661 15 O -0.474 6.474 16 C -0.192 4.192 17 C -0.150 4.150 18 C -0.152 4.152 19 H 0.113 0.887 20 C -0.125 4.125 21 C -0.158 4.158 22 C -0.118 4.118 23 C 0.003 3.997 24 C -0.093 4.093 25 H 0.073 0.927 26 H 0.031 0.969 27 H -0.025 1.025 28 H 0.024 0.976 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.151 0.849 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.121 0.879 40 H 0.105 0.895 41 H 0.136 0.864 42 H 0.110 0.890 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 5.824 -21.616 2.574 22.534 hybrid contribution -0.491 1.537 -1.186 2.003 sum 5.333 -20.078 1.388 20.821 Atomic orbital electron populations 1.70075 1.07720 1.27934 1.51712 1.25895 0.95719 1.03159 0.94776 0.85396 0.78686 0.78336 0.78298 1.20126 1.20730 1.18711 1.21463 0.93703 0.90989 1.50112 0.91700 1.19380 0.89993 0.88762 0.93622 1.62017 1.27364 1.03222 1.33564 1.22225 0.95388 0.99381 0.90013 1.21635 0.94879 0.81788 1.01565 1.48206 1.47052 1.07769 1.30688 1.20132 0.78716 0.85176 0.82031 1.90630 1.42944 1.87231 1.26558 1.22389 1.07097 0.91312 0.98437 1.23203 0.90366 1.00069 1.01403 1.23460 0.99993 0.92319 0.99413 0.88732 1.22003 1.01374 0.95183 0.93988 1.22686 0.98523 0.95585 0.99014 1.22069 1.01449 0.97924 0.90383 1.22023 0.90851 0.99297 0.87534 1.22564 0.95895 0.89913 1.00901 0.92667 0.96898 1.02495 0.97554 0.90160 0.89917 0.89978 0.84902 0.89599 0.88952 0.90446 0.88578 0.92656 0.91336 0.87949 0.89459 0.86427 0.88987 0.96518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.86 13.29 21.45 0.28 -55.57 16 2 C 0.00 0.15 5.46 84.66 0.46 0.61 16 3 Si 0.97 44.02 29.54 68.60 2.03 46.04 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.52 -29.37 8.40 25.60 0.22 -29.15 16 8 H 0.06 3.55 7.14 -2.91 -0.02 3.53 16 9 C 0.21 10.98 4.72 85.55 0.40 11.38 16 10 N -0.54 -22.69 4.62 -899.84 -4.16 -26.84 16 11 C 0.06 2.38 5.46 86.38 0.47 2.85 16 12 C 0.12 4.21 6.61 86.35 0.57 4.78 16 13 N -0.61 -18.41 3.01 -817.93 -2.46 -20.87 16 14 C 0.55 16.99 7.24 87.66 0.63 17.62 16 15 O -0.59 -23.03 16.25 -3.04 -0.05 -23.08 16 16 C -0.19 -4.07 1.50 -52.20 -0.08 -4.14 16 17 C -0.11 -2.03 9.89 30.59 0.30 -1.73 16 18 C -0.13 -2.56 6.54 -10.07 -0.07 -2.63 16 19 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 20 C -0.09 -1.12 6.64 31.67 0.21 -0.91 16 21 C -0.12 -1.56 6.91 31.88 0.22 -1.34 16 22 C -0.08 -1.22 4.77 31.67 0.15 -1.07 16 23 C 0.13 3.18 5.34 86.35 0.46 3.64 16 24 C 0.04 1.21 5.62 86.38 0.49 1.69 16 25 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 26 H 0.01 0.72 7.97 -2.39 -0.02 0.70 16 27 H -0.04 -2.49 8.12 -2.39 -0.02 -2.51 16 28 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.08 3.46 6.67 -2.39 -0.02 3.44 16 30 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.08 2.87 7.04 -2.39 -0.02 2.86 16 32 H 0.13 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.07 1.15 7.24 -2.39 -0.02 1.13 16 39 H 0.10 1.05 8.03 -2.39 -0.02 1.03 16 40 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.12 2.24 5.45 -2.39 -0.01 2.23 16 42 H 0.09 2.87 7.99 -2.39 -0.02 2.86 16 43 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -70.13 336.65 1.06 -69.06 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: 0.98 Total: 9.65 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 4.44 Total: 1.61 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -6.33 Total: -103.28 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.05 Total: -23.08 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -70.13 1.06 -69.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602200402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.949 kcal (2) G-P(sol) polarization free energy of solvation -70.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds