Wall clock time and date at job start Tue Mar 31 2020 00:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48497 * 109.47330 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47070 * 299.99934 * 3 2 1 6 6 H 1.48502 * 109.47038 * 59.99872 * 3 2 1 7 7 C 1.37877 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00026 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00098 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47083 * 179.97438 * 9 7 2 11 11 C 1.46895 * 111.00495 * 294.30271 * 10 9 7 12 12 C 1.53228 * 109.34167 * 172.74386 * 11 10 9 13 13 N 1.47083 * 108.52212 * 53.83090 * 12 11 10 14 14 C 1.34776 * 120.88284 * 128.79018 * 13 12 11 15 15 O 1.21278 * 120.00426 * 180.02562 * 14 13 12 16 16 C 1.50702 * 119.99766 * 0.02718 * 14 13 12 17 17 C 1.53002 * 119.29872 * 250.22833 * 16 14 13 18 18 C 1.52999 * 60.37829 * 248.69535 * 17 16 14 19 19 H 1.09007 * 119.29952 * 111.31031 * 18 17 16 20 20 C 1.54263 * 118.19698 * 266.37782 * 18 17 16 21 21 C 1.54894 * 104.19159 * 87.79421 * 20 18 17 22 22 C 1.54265 * 117.41488 * 44.57370 * 16 14 13 23 23 C 1.47072 * 118.23733 * 308.81485 * 13 12 11 24 24 C 1.46906 * 110.99831 * 169.99953 * 10 9 7 25 25 H 0.97002 * 120.00682 * 0.02562 * 1 2 3 26 26 H 1.09006 * 109.47092 * 59.99849 * 9 7 2 27 27 H 1.09000 * 109.47064 * 299.99809 * 9 7 2 28 28 H 1.08997 * 109.49089 * 292.70978 * 11 10 9 29 29 H 1.09007 * 109.49281 * 52.78116 * 11 10 9 30 30 H 1.08995 * 109.63228 * 294.12148 * 12 11 10 31 31 H 1.09002 * 109.63099 * 173.54032 * 12 11 10 32 32 H 1.09005 * 117.45863 * 356.28855 * 17 16 14 33 33 H 1.08992 * 117.46369 * 141.09499 * 17 16 14 34 34 H 1.08999 * 110.48967 * 206.46869 * 20 18 17 35 35 H 1.08996 * 110.48929 * 329.11515 * 20 18 17 36 36 H 1.08993 * 110.75629 * 80.37459 * 21 20 18 37 37 H 1.09006 * 110.75549 * 203.74521 * 21 20 18 38 38 H 1.09011 * 110.48300 * 235.04728 * 22 16 14 39 39 H 1.08998 * 110.48791 * 357.68630 * 22 16 14 40 40 H 1.09000 * 109.62875 * 291.47435 * 23 13 12 41 41 H 1.09006 * 109.78964 * 170.98862 * 23 13 12 42 42 H 1.08997 * 109.49116 * 307.21603 * 24 10 9 43 43 H 1.08992 * 109.49351 * 67.27068 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 2.9767 -3.6492 -1.2493 12 6 4.0789 -4.7078 -1.1374 13 7 3.4615 -5.9863 -0.7532 14 6 3.7115 -7.1123 -1.4503 15 8 3.1934 -8.1579 -1.1197 16 6 4.6348 -7.0722 -2.6406 17 6 4.0539 -7.2476 -4.0451 18 6 4.9468 -8.3405 -3.4542 19 1 4.5088 -9.3038 -3.1927 20 6 6.4558 -8.3000 -3.7723 21 6 7.0528 -7.3942 -2.6667 22 6 5.9538 -6.2864 -2.4903 23 6 2.5637 -6.0032 0.4116 24 6 1.5211 -4.8935 0.2387 25 1 -0.4851 0.8400 -0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.3149 -3.8993 -2.0784 29 1 3.4272 -2.6722 -1.4250 30 1 4.8001 -4.4066 -0.3777 31 1 4.5801 -4.8176 -2.0991 32 1 2.9874 -7.4587 -4.1252 33 1 4.4720 -6.6333 -4.8424 34 1 6.8841 -9.3008 -3.7181 35 1 6.6266 -7.8637 -4.7565 36 1 7.1907 -7.9538 -1.7416 37 1 7.9931 -6.9518 -2.9957 38 1 6.0425 -5.5361 -3.2761 39 1 6.0094 -5.8189 -1.5072 40 1 3.1393 -5.8265 1.3202 41 1 2.0629 -6.9691 0.4775 42 1 0.9159 -4.8191 1.1422 43 1 0.8792 -5.1262 -0.6109 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602200404.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:23:56 Heat of formation + Delta-G solvation = 2.678987 kcal Electronic energy + Delta-G solvation = -22431.122863 eV Core-core repulsion = 19284.027875 eV Total energy + Delta-G solvation = -3147.094988 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.77478 -38.63364 -37.22533 -34.43488 -32.45824 -31.73261 -31.03878 -28.73991 -28.07528 -25.68818 -23.64767 -23.11274 -22.44009 -21.33721 -20.67444 -19.71187 -18.44717 -16.72129 -16.40772 -16.13834 -15.40480 -14.90436 -14.80992 -14.46217 -14.37855 -13.87451 -13.59910 -13.41076 -13.32584 -13.16828 -12.76297 -12.31985 -11.94603 -11.92275 -11.37329 -11.29407 -11.28378 -11.13346 -11.02025 -10.86469 -10.74703 -10.55948 -10.51562 -10.48196 -9.90920 -9.84838 -9.48611 -9.27859 -8.51563 -8.41727 -7.33350 -6.07909 -4.09979 2.59734 3.08918 3.27263 3.35072 3.38869 3.52347 4.22655 4.37329 4.42920 4.52034 4.64109 4.81243 5.00466 5.12412 5.20477 5.27190 5.30810 5.32436 5.41861 5.46444 5.52383 5.58601 5.64290 5.64942 5.69249 5.78362 5.84909 5.85754 5.93540 6.01143 6.04946 6.16218 6.28121 6.45034 6.47543 6.71643 7.21003 7.26951 7.59041 7.73329 8.00311 8.10964 8.31751 8.46167 8.97534 9.54692 11.02986 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026187 B = 0.004125 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.994304 B = 6786.489867 C = 7389.137377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.535 5.535 11 C 0.050 3.950 12 C 0.103 3.897 13 N -0.601 5.601 14 C 0.556 3.444 15 O -0.553 6.553 16 C -0.175 4.175 17 C -0.124 4.124 18 C -0.128 4.128 19 H 0.118 0.882 20 C -0.096 4.096 21 C -0.123 4.123 22 C -0.093 4.093 23 C 0.118 3.882 24 C 0.042 3.958 25 H 0.261 0.739 26 H -0.009 1.009 27 H 0.032 0.968 28 H 0.024 0.976 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.031 -13.437 -7.051 19.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.083 0.917 9 C 0.068 3.932 10 N -0.260 5.260 11 C -0.080 4.080 12 C -0.020 4.020 13 N -0.334 5.334 14 C 0.344 3.656 15 O -0.432 6.432 16 C -0.178 4.178 17 C -0.161 4.161 18 C -0.147 4.147 19 H 0.136 0.864 20 C -0.133 4.133 21 C -0.161 4.161 22 C -0.130 4.130 23 C -0.005 4.005 24 C -0.088 4.088 25 H 0.071 0.929 26 H 0.009 0.991 27 H 0.050 0.950 28 H 0.042 0.958 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 11.927 -13.776 -6.457 19.331 hybrid contribution -0.425 0.992 -0.532 1.203 sum 11.501 -12.784 -6.988 18.562 Atomic orbital electron populations 1.69966 1.06107 1.26755 1.50863 1.24996 0.94853 0.99365 0.95368 0.86445 0.80044 0.83403 0.77542 1.19620 1.21116 1.20996 1.21170 0.93490 0.89842 1.50228 0.91745 1.19736 0.90031 0.87217 0.96218 1.62087 1.28042 1.02665 1.33250 1.22350 0.95196 0.99055 0.91356 1.22323 0.96275 0.82442 1.00957 1.48091 1.46685 1.08514 1.30073 1.19355 0.80663 0.83057 0.82528 1.90646 1.52696 1.30491 1.69389 1.22307 0.98871 1.04130 0.92539 1.23110 0.99707 1.00570 0.92729 1.23343 0.95537 0.93694 1.02089 0.86432 1.21977 0.92262 1.00257 0.98827 1.23059 0.97842 0.96270 0.98886 1.22612 0.90523 0.96901 1.02957 1.21749 0.91752 0.99456 0.87504 1.22397 0.94928 0.90580 1.00887 0.92917 0.99127 0.95033 0.95755 0.88505 0.90787 0.89086 0.88071 0.87976 0.90994 0.91079 0.91218 0.91053 0.90335 0.89906 0.90970 0.89523 0.90070 0.95605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.24 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -13.79 8.41 -34.44 -0.29 -14.08 16 8 H 0.06 1.71 7.13 -52.49 -0.37 1.34 16 9 C 0.19 4.91 4.72 -4.98 -0.02 4.88 16 10 N -0.54 -11.16 4.62 -235.77 -1.09 -12.24 16 11 C 0.05 0.91 5.46 -3.71 -0.02 0.89 16 12 C 0.10 1.49 4.92 -3.61 -0.02 1.47 16 13 N -0.60 -9.42 3.01 -172.47 -0.52 -9.94 16 14 C 0.56 8.77 7.37 -10.98 -0.08 8.69 16 15 O -0.55 -10.41 16.25 5.56 0.09 -10.32 16 16 C -0.18 -2.12 1.94 -154.54 -0.30 -2.42 16 17 C -0.12 -1.31 9.85 -26.73 -0.26 -1.57 16 18 C -0.13 -1.36 6.54 -89.50 -0.59 -1.95 16 19 H 0.12 1.38 8.14 -51.93 -0.42 0.95 16 20 C -0.10 -0.79 6.63 -25.07 -0.17 -0.95 16 21 C -0.12 -1.04 6.96 -23.54 -0.16 -1.20 16 22 C -0.09 -0.91 4.58 -23.88 -0.11 -1.02 16 23 C 0.12 1.90 6.59 -3.61 -0.02 1.88 16 24 C 0.04 0.76 5.62 -3.70 -0.02 0.74 16 25 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 26 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 27 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.10 1.86 6.67 -51.93 -0.35 1.52 16 30 H 0.07 1.05 8.03 -51.93 -0.42 0.63 16 31 H 0.09 1.11 4.48 -51.93 -0.23 0.87 16 32 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.67 7.91 -51.92 -0.41 0.26 16 39 H 0.08 0.86 6.06 -51.93 -0.31 0.54 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.09 1.40 7.07 -51.93 -0.37 1.03 16 42 H 0.08 1.43 7.99 -51.93 -0.41 1.02 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 334.24 15.07 5.04 5.04 Total: -1.00 -31.15 334.24 -10.00 -41.16 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -7.08 Total: -1.00 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -2.16 Total: -3.20 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.87 Total: -47.69 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.15 -10.00 -41.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602200404.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.837 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds