Wall clock time and date at job start Tue Mar 31 2020 00:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47358 * 179.97438 * 9 7 2 11 11 C 1.46905 * 110.99486 * 294.29978 * 10 9 7 12 12 C 1.53242 * 109.33471 * 172.74482 * 11 10 9 13 13 N 1.47080 * 108.52295 * 53.83085 * 12 11 10 14 14 C 1.34773 * 120.87989 * 128.78788 * 13 12 11 15 15 O 1.21286 * 119.99750 * 180.02562 * 14 13 12 16 16 C 1.50694 * 120.00253 * 0.02562 * 14 13 12 17 17 H 1.09001 * 115.52664 * 34.49986 * 16 14 13 18 18 C 1.53010 * 117.46219 * 179.97438 * 16 14 13 19 19 H 1.08999 * 119.29429 * 355.35157 * 18 16 14 20 20 C 1.54264 * 118.19634 * 201.21285 * 18 16 14 21 21 C 1.54889 * 104.19475 * 272.20783 * 20 18 16 22 22 C 1.54886 * 102.74631 * 37.94823 * 21 20 18 23 23 C 1.53000 * 117.46083 * 249.03970 * 16 14 13 24 24 H 1.08999 * 119.29572 * 3.70539 * 23 16 14 25 25 C 1.47082 * 118.23434 * 308.81340 * 13 12 11 26 26 C 1.46893 * 111.00179 * 169.99615 * 10 9 7 27 27 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 29 29 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 30 30 H 1.08997 * 109.48922 * 292.70258 * 11 10 9 31 31 H 1.09005 * 109.49291 * 52.78619 * 11 10 9 32 32 H 1.08994 * 109.62792 * 294.11807 * 12 11 10 33 33 H 1.09006 * 109.78529 * 173.63388 * 12 11 10 34 34 H 1.08994 * 110.48941 * 30.89566 * 20 18 16 35 35 H 1.09003 * 110.47968 * 153.53452 * 20 18 16 36 36 H 1.09000 * 110.75143 * 156.25873 * 21 20 18 37 37 H 1.09002 * 110.75941 * 279.62998 * 21 20 18 38 38 H 1.08998 * 110.48977 * 80.73483 * 22 21 20 39 39 H 1.09004 * 110.48075 * 203.24095 * 22 21 20 40 40 H 1.08997 * 109.62311 * 291.47020 * 25 13 12 41 41 H 1.08998 * 109.62694 * 170.89938 * 25 13 12 42 42 H 1.08995 * 109.49251 * 307.21182 * 26 10 9 43 43 H 1.09001 * 109.49427 * 67.29162 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.9767 -3.6490 -1.2495 12 6 4.0790 -4.7077 -1.1377 13 7 3.4617 -5.9862 -0.7534 14 6 3.7117 -7.1121 -1.4506 15 8 3.1936 -8.1577 -1.1199 16 6 4.6349 -7.0720 -2.6410 17 1 5.4692 -6.3747 -2.5652 18 6 4.8781 -8.3840 -3.3898 19 1 4.4470 -9.3071 -3.0023 20 6 6.1471 -8.5028 -4.2590 21 6 5.7163 -7.9452 -5.6383 22 6 4.7866 -6.7671 -5.2555 23 6 4.0130 -7.2798 -4.0234 24 1 2.9319 -7.3871 -4.1113 25 6 2.5640 -6.0031 0.4115 26 6 1.5214 -4.8935 0.2388 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6242 -2.5567 0.8904 29 1 0.6248 -2.5571 -0.8896 30 1 2.3148 -3.8993 -2.0785 31 1 3.4272 -2.6720 -1.4252 32 1 4.8003 -4.4064 -0.3781 33 1 4.5831 -4.8184 -2.0978 34 1 6.9542 -7.9021 -3.8398 35 1 6.4526 -9.5453 -4.3474 36 1 6.5810 -7.5888 -6.1980 37 1 5.1709 -8.6989 -6.2064 38 1 5.3739 -5.8859 -4.9973 39 1 4.1009 -6.5414 -6.0722 40 1 3.1397 -5.8264 1.3199 41 1 2.0635 -6.9694 0.4740 42 1 0.9163 -4.8190 1.1423 43 1 0.8797 -5.1264 -0.6110 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602208396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:16 Heat of formation + Delta-G solvation = -9.253100 kcal Electronic energy + Delta-G solvation = -22055.655048 eV Core-core repulsion = 18908.042646 eV Total energy + Delta-G solvation = -3147.612403 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.63359 -38.95088 -37.38909 -34.56347 -32.66613 -32.04051 -30.78875 -28.49590 -28.14316 -25.55313 -24.11144 -23.22450 -22.04089 -21.05241 -20.39034 -19.87876 -18.66014 -17.41979 -16.77159 -16.26802 -15.29972 -15.03844 -14.96803 -14.65475 -14.26615 -13.93007 -13.68023 -13.55300 -13.43941 -13.18814 -12.76402 -12.33480 -11.81067 -11.69451 -11.55310 -11.40128 -11.37228 -11.34854 -11.12531 -11.03281 -10.75048 -10.61764 -10.44099 -10.28865 -10.10784 -9.97557 -9.62294 -8.83902 -8.46821 -8.43132 -7.45399 -6.42381 -4.12232 2.45567 2.98263 3.40632 3.43141 3.55616 3.61603 4.17179 4.46081 4.46239 4.50709 4.67102 4.77625 4.93745 4.96289 5.14175 5.20024 5.23380 5.29620 5.34417 5.36041 5.45175 5.46240 5.56213 5.58575 5.68533 5.74383 5.78165 5.81426 5.87137 5.95717 6.04487 6.13703 6.16485 6.34516 6.38193 6.61334 6.91268 6.99953 7.49170 7.68200 7.86200 8.22444 8.23418 8.49858 8.80146 9.58936 10.96672 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023402 B = 0.003895 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.183254 B = 7186.460869 C = 7957.730319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.015 3.985 3 Si 1.072 2.928 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.591 4.591 8 H 0.058 0.942 9 C 0.183 3.817 10 N -0.529 5.529 11 C 0.052 3.948 12 C 0.110 3.890 13 N -0.603 5.603 14 C 0.544 3.456 15 O -0.551 6.551 16 C -0.162 4.162 17 H 0.121 0.879 18 C -0.132 4.132 19 H 0.121 0.879 20 C -0.097 4.097 21 C -0.123 4.123 22 C -0.097 4.097 23 C -0.136 4.136 24 H 0.113 0.887 25 C 0.119 3.881 26 C 0.040 3.960 27 H 0.267 0.733 28 H 0.022 0.978 29 H -0.020 1.020 30 H 0.024 0.976 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.556 -14.171 -8.791 20.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.189 4.189 3 Si 0.900 3.100 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.629 4.629 8 H 0.076 0.924 9 C 0.058 3.942 10 N -0.254 5.254 11 C -0.077 4.077 12 C -0.013 4.013 13 N -0.336 5.336 14 C 0.332 3.668 15 O -0.430 6.430 16 C -0.182 4.182 17 H 0.139 0.861 18 C -0.151 4.151 19 H 0.139 0.861 20 C -0.134 4.134 21 C -0.160 4.160 22 C -0.134 4.134 23 C -0.154 4.154 24 H 0.131 0.869 25 C -0.004 4.004 26 C -0.090 4.090 27 H 0.077 0.923 28 H 0.040 0.960 29 H -0.002 1.002 30 H 0.043 0.957 31 H 0.117 0.883 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 11.402 -12.988 -8.222 19.138 hybrid contribution -0.517 -1.636 -0.487 1.784 sum 10.884 -14.624 -8.709 20.203 Atomic orbital electron populations 1.70798 1.06934 1.30436 1.46713 1.25865 0.96465 1.02755 0.93828 0.83489 0.74813 0.75104 0.76554 1.20826 1.21447 1.21323 1.21941 0.94758 0.90866 1.55348 0.92400 1.19831 0.90648 0.88803 0.94924 1.61988 1.27590 1.02333 1.33491 1.22324 0.95136 0.99192 0.91083 1.22030 0.96172 0.82422 1.00673 1.48132 1.46771 1.08537 1.30141 1.19575 0.81126 0.83118 0.82939 1.90653 1.52462 1.30366 1.69514 1.22369 1.01707 1.02360 0.91808 0.86106 1.23255 0.98220 0.93034 1.00584 0.86137 1.22007 0.95765 1.01525 0.94129 1.22696 0.98972 0.97472 0.96885 1.22001 0.97708 0.98051 0.95645 1.23223 0.99111 1.02816 0.90278 0.86923 1.21743 0.91683 0.99388 0.87567 1.22430 0.95065 0.90637 1.00831 0.92304 0.96022 1.00186 0.95743 0.88316 0.90641 0.89876 0.91214 0.90916 0.91136 0.91172 0.90993 0.90787 0.90843 0.89367 0.90108 0.95607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.44 13.65 55.43 0.76 -26.68 16 2 C 0.01 0.41 5.46 -17.82 -0.10 0.32 16 3 Si 1.07 24.64 29.90 -169.99 -5.08 19.56 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.59 -16.23 8.41 -34.44 -0.29 -16.52 16 8 H 0.06 1.57 7.13 -52.48 -0.37 1.19 16 9 C 0.18 4.65 4.04 -4.97 -0.02 4.63 16 10 N -0.53 -11.11 4.62 -235.76 -1.09 -12.20 16 11 C 0.05 0.95 5.46 -3.70 -0.02 0.93 16 12 C 0.11 1.60 6.45 -3.60 -0.02 1.57 16 13 N -0.60 -9.39 3.01 -172.47 -0.52 -9.90 16 14 C 0.54 8.44 7.49 -10.99 -0.08 8.36 16 15 O -0.55 -10.15 15.78 5.55 0.09 -10.06 16 16 C -0.16 -1.93 4.49 -91.77 -0.41 -2.34 16 17 H 0.12 1.25 6.89 -51.93 -0.36 0.89 16 18 C -0.13 -1.43 6.39 -89.47 -0.57 -2.00 16 19 H 0.12 1.46 7.79 -51.93 -0.40 1.06 16 20 C -0.10 -0.78 6.62 -25.07 -0.17 -0.95 16 21 C -0.12 -0.89 6.91 -24.74 -0.17 -1.06 16 22 C -0.10 -0.82 6.62 -25.08 -0.17 -0.98 16 23 C -0.14 -1.47 6.64 -89.49 -0.59 -2.07 16 24 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 25 C 0.12 1.90 6.60 -3.60 -0.02 1.88 16 26 C 0.04 0.72 5.62 -3.71 -0.02 0.70 16 27 H 0.27 8.01 7.22 -40.82 -0.29 7.72 16 28 H 0.02 0.58 7.84 -51.93 -0.41 0.18 16 29 H -0.02 -0.53 7.99 -51.93 -0.41 -0.94 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.10 1.94 6.67 -51.93 -0.35 1.59 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.08 0.98 5.79 -51.93 -0.30 0.68 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.09 1.40 7.06 -51.93 -0.37 1.04 16 42 H 0.08 1.42 7.99 -51.93 -0.41 1.00 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 337.39 15.07 5.08 5.08 Total: -1.00 -31.69 337.39 -10.55 -42.24 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.13 Total: -0.51 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -2.66 Total: -7.54 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -0.85 Total: -48.78 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -5.08 Total: 19.56 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.69 -10.55 -42.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602208396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.990 kcal (2) G-P(sol) polarization free energy of solvation -31.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds