Wall clock time and date at job start Tue Mar 31 2020 00:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47358 * 179.97438 * 9 7 2 11 11 C 1.46905 * 110.99486 * 294.29978 * 10 9 7 12 12 C 1.53242 * 109.33471 * 172.74482 * 11 10 9 13 13 N 1.47080 * 108.52295 * 53.83085 * 12 11 10 14 14 C 1.34773 * 120.87989 * 128.78788 * 13 12 11 15 15 O 1.21286 * 119.99750 * 180.02562 * 14 13 12 16 16 C 1.50694 * 120.00253 * 0.02562 * 14 13 12 17 17 H 1.09001 * 115.52664 * 34.49986 * 16 14 13 18 18 C 1.53010 * 117.46219 * 179.97438 * 16 14 13 19 19 H 1.08999 * 119.29429 * 355.35157 * 18 16 14 20 20 C 1.54264 * 118.19634 * 201.21285 * 18 16 14 21 21 C 1.54889 * 104.19475 * 272.20783 * 20 18 16 22 22 C 1.54886 * 102.74631 * 37.94823 * 21 20 18 23 23 C 1.53000 * 117.46083 * 249.03970 * 16 14 13 24 24 H 1.08999 * 119.29572 * 3.70539 * 23 16 14 25 25 C 1.47082 * 118.23434 * 308.81340 * 13 12 11 26 26 C 1.46893 * 111.00179 * 169.99615 * 10 9 7 27 27 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 29 29 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 30 30 H 1.08997 * 109.48922 * 292.70258 * 11 10 9 31 31 H 1.09005 * 109.49291 * 52.78619 * 11 10 9 32 32 H 1.08994 * 109.62792 * 294.11807 * 12 11 10 33 33 H 1.09006 * 109.78529 * 173.63388 * 12 11 10 34 34 H 1.08994 * 110.48941 * 30.89566 * 20 18 16 35 35 H 1.09003 * 110.47968 * 153.53452 * 20 18 16 36 36 H 1.09000 * 110.75143 * 156.25873 * 21 20 18 37 37 H 1.09002 * 110.75941 * 279.62998 * 21 20 18 38 38 H 1.08998 * 110.48977 * 80.73483 * 22 21 20 39 39 H 1.09004 * 110.48075 * 203.24095 * 22 21 20 40 40 H 1.08997 * 109.62311 * 291.47020 * 25 13 12 41 41 H 1.08998 * 109.62694 * 170.89938 * 25 13 12 42 42 H 1.08995 * 109.49251 * 307.21182 * 26 10 9 43 43 H 1.09001 * 109.49427 * 67.29162 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.9767 -3.6490 -1.2495 12 6 4.0790 -4.7077 -1.1377 13 7 3.4617 -5.9862 -0.7534 14 6 3.7117 -7.1121 -1.4506 15 8 3.1936 -8.1577 -1.1199 16 6 4.6349 -7.0720 -2.6410 17 1 5.4692 -6.3747 -2.5652 18 6 4.8781 -8.3840 -3.3898 19 1 4.4470 -9.3071 -3.0023 20 6 6.1471 -8.5028 -4.2590 21 6 5.7163 -7.9452 -5.6383 22 6 4.7866 -6.7671 -5.2555 23 6 4.0130 -7.2798 -4.0234 24 1 2.9319 -7.3871 -4.1113 25 6 2.5640 -6.0031 0.4115 26 6 1.5214 -4.8935 0.2388 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6242 -2.5567 0.8904 29 1 0.6248 -2.5571 -0.8896 30 1 2.3148 -3.8993 -2.0785 31 1 3.4272 -2.6720 -1.4252 32 1 4.8003 -4.4064 -0.3781 33 1 4.5831 -4.8184 -2.0978 34 1 6.9542 -7.9021 -3.8398 35 1 6.4526 -9.5453 -4.3474 36 1 6.5810 -7.5888 -6.1980 37 1 5.1709 -8.6989 -6.2064 38 1 5.3739 -5.8859 -4.9973 39 1 4.1009 -6.5414 -6.0722 40 1 3.1397 -5.8264 1.3199 41 1 2.0635 -6.9694 0.4740 42 1 0.9163 -4.8190 1.1423 43 1 0.8797 -5.1264 -0.6110 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602208396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:15 Heat of formation + Delta-G solvation = -28.746423 kcal Electronic energy + Delta-G solvation = -22056.500342 eV Core-core repulsion = 18908.042646 eV Total energy + Delta-G solvation = -3148.457696 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.72694 -40.07132 -38.78303 -36.22353 -34.56772 -32.98387 -32.06484 -29.84136 -29.15916 -27.25814 -25.42717 -24.71408 -23.73354 -22.11974 -21.41331 -20.68818 -19.88010 -18.98476 -18.48714 -17.45366 -16.41058 -16.38673 -16.13735 -16.05186 -15.68943 -15.57227 -15.38569 -14.67178 -14.49318 -14.17794 -14.00598 -13.78223 -13.43572 -13.21968 -13.06177 -12.52691 -12.49768 -12.42644 -12.29560 -12.19402 -12.10973 -11.99405 -11.89513 -11.70017 -11.17268 -10.94967 -10.84144 -10.66434 -10.57695 -9.87627 -9.21708 -8.68329 -6.39796 1.29993 1.56353 1.64709 1.79206 1.83670 2.57320 2.65098 3.03493 3.16238 3.23329 3.67114 3.70247 3.77358 3.90182 3.97049 4.10114 4.12130 4.18334 4.25109 4.30426 4.43759 4.46652 4.50973 4.60846 4.65952 4.71065 4.75374 4.80880 4.81226 4.94049 4.98609 5.02423 5.12997 5.21128 5.21962 5.25569 5.34417 5.49571 5.71295 5.91198 6.25544 6.29984 6.38546 6.57100 6.99827 7.41714 8.70591 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023402 B = 0.003895 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.183254 B = 7186.460869 C = 7957.730319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.038 4.038 3 Si 1.122 2.878 4 H -0.288 1.288 5 H -0.264 1.264 6 H -0.269 1.269 7 C -0.597 4.597 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.533 5.533 11 C 0.052 3.948 12 C 0.122 3.878 13 N -0.607 5.607 14 C 0.540 3.460 15 O -0.586 6.586 16 C -0.167 4.167 17 H 0.145 0.855 18 C -0.132 4.132 19 H 0.100 0.900 20 C -0.092 4.092 21 C -0.118 4.118 22 C -0.094 4.094 23 C -0.137 4.137 24 H 0.093 0.907 25 C 0.126 3.874 26 C 0.043 3.957 27 H 0.252 0.748 28 H 0.000 1.000 29 H -0.047 1.047 30 H 0.013 0.987 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.624 -14.071 -9.926 22.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.235 4.235 3 Si 0.943 3.057 4 H -0.214 1.214 5 H -0.189 1.189 6 H -0.194 1.194 7 C -0.635 4.635 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.258 5.258 11 C -0.077 4.077 12 C 0.000 4.000 13 N -0.339 5.339 14 C 0.330 3.670 15 O -0.467 6.467 16 C -0.188 4.188 17 H 0.163 0.837 18 C -0.150 4.150 19 H 0.118 0.882 20 C -0.129 4.129 21 C -0.155 4.155 22 C -0.131 4.131 23 C -0.156 4.156 24 H 0.112 0.888 25 C 0.004 3.996 26 C -0.086 4.086 27 H 0.061 0.939 28 H 0.018 0.982 29 H -0.029 1.029 30 H 0.031 0.969 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.136 0.864 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.100 0.900 43 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 14.493 -12.921 -9.367 21.558 hybrid contribution -1.544 -1.762 -0.124 2.346 sum 12.948 -14.683 -9.491 21.756 Atomic orbital electron populations 1.70935 1.08157 1.29590 1.49069 1.27460 0.96429 1.06858 0.92741 0.82871 0.73999 0.70654 0.78196 1.21373 1.18931 1.19410 1.22259 0.95138 0.91685 1.54385 0.91852 1.19543 0.90768 0.90339 0.92586 1.61943 1.26592 1.02182 1.35046 1.22369 0.95651 1.00245 0.89446 1.22026 0.94562 0.80470 1.02988 1.48231 1.46644 1.09104 1.29943 1.20217 0.81008 0.82355 0.83392 1.90634 1.53959 1.31597 1.70524 1.22400 1.01741 1.04035 0.90627 0.83712 1.23330 0.99694 0.91770 1.00240 0.88160 1.22045 0.94474 1.02547 0.93825 1.22695 0.99351 0.96898 0.96538 1.22052 0.97812 0.98868 0.94363 1.23312 0.98531 1.03064 0.90723 0.88835 1.21608 0.91389 0.98168 0.88483 1.22453 0.95688 0.90101 1.00376 0.93898 0.98220 1.02916 0.96908 0.89367 0.89460 0.86443 0.90095 0.89974 0.89186 0.91078 0.89971 0.90351 0.89757 0.89318 0.89953 0.96839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.77 13.65 21.45 0.29 -57.47 16 2 C -0.04 -2.13 5.46 84.65 0.46 -1.67 16 3 Si 1.12 48.72 29.90 68.60 2.05 50.77 16 4 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 6 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.60 -32.99 8.41 25.60 0.22 -32.78 16 8 H 0.06 3.38 7.13 -2.91 -0.02 3.36 16 9 C 0.19 10.17 4.04 85.56 0.35 10.52 16 10 N -0.53 -22.56 4.62 -899.82 -4.16 -26.72 16 11 C 0.05 1.87 5.46 86.38 0.47 2.35 16 12 C 0.12 3.26 6.45 86.35 0.56 3.82 16 13 N -0.61 -18.12 3.01 -817.95 -2.46 -20.59 16 14 C 0.54 16.22 7.49 87.66 0.66 16.87 16 15 O -0.59 -21.60 15.78 -3.05 -0.05 -21.65 16 16 C -0.17 -3.66 4.49 -11.54 -0.05 -3.71 16 17 H 0.15 2.44 6.89 -2.39 -0.02 2.42 16 18 C -0.13 -2.63 6.39 -10.05 -0.06 -2.69 16 19 H 0.10 2.42 7.79 -2.39 -0.02 2.40 16 20 C -0.09 -1.20 6.62 31.67 0.21 -0.99 16 21 C -0.12 -1.31 6.91 31.88 0.22 -1.09 16 22 C -0.09 -1.31 6.62 31.66 0.21 -1.10 16 23 C -0.14 -2.78 6.64 -10.06 -0.07 -2.84 16 24 H 0.09 2.23 8.14 -2.39 -0.02 2.22 16 25 C 0.13 3.99 6.60 86.35 0.57 4.56 16 26 C 0.04 1.58 5.62 86.38 0.49 2.07 16 27 H 0.25 15.79 7.22 -92.71 -0.67 15.12 16 28 H 0.00 -0.01 7.84 -2.39 -0.02 -0.03 16 29 H -0.05 -2.66 7.99 -2.39 -0.02 -2.68 16 30 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.09 3.39 6.67 -2.38 -0.02 3.37 16 32 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.12 2.37 5.79 -2.38 -0.01 2.35 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 35 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 36 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.09 2.82 7.06 -2.39 -0.02 2.81 16 42 H 0.08 2.97 7.99 -2.39 -0.02 2.95 16 43 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -69.93 337.39 0.97 -68.95 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 1.08 Total: 13.39 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 4.22 Total: -6.69 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -6.33 Total: -104.77 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.05 Total: -21.65 kcal Atomic # 14 Polarization: 48.72 SS G_CDS: 2.05 Total: 50.77 kcal Total: -69.93 0.97 -68.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602208396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.206 kcal (2) G-P(sol) polarization free energy of solvation -69.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds