Wall clock time and date at job start Tue Mar 31 2020 00:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00038 * 2 1 4 4 H 1.48505 * 109.46821 * 90.00411 * 3 2 1 5 5 H 1.48502 * 109.47115 * 210.00252 * 3 2 1 6 6 H 1.48499 * 109.47402 * 330.00293 * 3 2 1 7 7 C 1.37881 * 119.99583 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00012 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99478 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.46646 * 179.97438 * 9 7 2 11 11 C 1.46896 * 110.99968 * 294.29504 * 10 9 7 12 12 C 1.53241 * 109.34093 * 172.74744 * 11 10 9 13 13 N 1.47083 * 108.51958 * 53.83397 * 12 11 10 14 14 C 1.34776 * 120.88394 * 128.79356 * 13 12 11 15 15 O 1.21278 * 120.00060 * 175.26985 * 14 13 12 16 16 C 1.50698 * 119.99726 * 355.26298 * 14 13 12 17 17 H 1.09006 * 109.64047 * 34.83003 * 16 14 13 18 18 C 1.53028 * 109.64413 * 274.18861 * 16 14 13 19 19 C 1.50063 * 110.14688 * 190.87856 * 18 16 14 20 20 C 1.29448 * 124.07477 * 17.13752 * 19 18 16 21 21 C 1.50059 * 124.07725 * 359.52315 * 20 19 18 22 22 C 1.53023 * 110.14741 * 17.13821 * 21 20 19 23 23 C 1.47083 * 118.23398 * 308.81455 * 13 12 11 24 24 C 1.46895 * 110.99852 * 169.99452 * 10 9 7 25 25 H 0.97003 * 119.99995 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46685 * 299.99384 * 9 7 2 27 27 H 1.08996 * 109.47316 * 59.99824 * 9 7 2 28 28 H 1.08995 * 109.49590 * 292.70877 * 11 10 9 29 29 H 1.09000 * 109.49158 * 52.79316 * 11 10 9 30 30 H 1.08991 * 109.63026 * 294.12432 * 12 11 10 31 31 H 1.09007 * 109.62820 * 173.54023 * 12 11 10 32 32 H 1.08991 * 109.35994 * 311.08953 * 18 16 14 33 33 H 1.09007 * 109.35317 * 70.67619 * 18 16 14 34 34 H 1.08001 * 117.96744 * 197.10911 * 19 18 16 35 35 H 1.08007 * 117.95708 * 179.54872 * 20 19 18 36 36 H 1.08992 * 109.36217 * 256.92451 * 21 20 19 37 37 H 1.09007 * 109.24456 * 137.27065 * 21 20 19 38 38 H 1.08994 * 109.64387 * 190.88023 * 22 21 20 39 39 H 1.08994 * 109.82144 * 70.34827 * 22 21 20 40 40 H 1.08994 * 109.62848 * 291.47654 * 23 13 12 41 41 H 1.09000 * 109.62495 * 170.89619 * 23 13 12 42 42 H 1.08997 * 109.49863 * 307.21534 * 24 10 9 43 43 H 1.09005 * 109.49516 * 67.29268 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 1.4001 5 1 3.5467 1.4401 -0.7001 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0011 -2.5791 -0.0001 11 6 3.6441 -3.2638 1.2496 12 6 4.0098 -4.7477 1.1376 13 7 5.4258 -4.8522 0.7539 14 6 6.2757 -5.6319 1.4512 15 8 7.4186 -5.7741 1.0712 16 6 5.8059 -6.3268 2.7031 17 1 4.7626 -6.6211 2.5893 18 6 5.9516 -5.3846 3.9001 19 6 5.7421 -6.1390 5.1803 20 6 5.7936 -7.4287 5.2788 21 6 6.0598 -8.3502 4.1248 22 6 6.6677 -7.5703 2.9569 23 6 5.8898 -4.0829 -0.4107 24 6 5.4500 -2.6253 -0.2378 25 1 -0.4850 0.8401 0.0004 26 1 3.8751 -0.6797 -0.8895 27 1 3.8745 -0.6809 0.8905 28 1 4.1914 -2.8159 2.0789 29 1 2.5728 -3.1655 1.4249 30 1 3.3886 -5.2216 0.3777 31 1 3.8539 -5.2368 2.0993 32 1 6.9505 -4.9484 3.8971 33 1 5.2114 -4.5879 3.8249 34 1 5.5360 -5.5706 6.0752 35 1 5.6346 -7.8688 6.2522 36 1 5.1241 -8.8086 3.8051 37 1 6.7545 -9.1289 4.4397 38 1 6.6792 -8.1963 2.0648 39 1 7.6848 -7.2669 3.2047 40 1 5.4492 -4.4929 -1.3194 41 1 6.9769 -4.1326 -0.4727 42 1 5.6885 -2.0638 -1.1411 43 1 5.9723 -2.1862 0.6123 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602209516.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:51 Heat of formation + Delta-G solvation = -17.045330 kcal Electronic energy + Delta-G solvation = -22297.822117 eV Core-core repulsion = 19149.871818 eV Total energy + Delta-G solvation = -3147.950299 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.47560 -38.31181 -37.23882 -34.50282 -32.49696 -31.74958 -31.01531 -30.48191 -28.71697 -25.90106 -24.06422 -23.42434 -22.88010 -21.51611 -20.42255 -18.68661 -18.11724 -17.08971 -16.86441 -16.33664 -15.42644 -15.14814 -14.66349 -14.59142 -14.32143 -14.08163 -13.77427 -13.59288 -13.36528 -13.27718 -12.80227 -12.50419 -12.43178 -12.37850 -12.12666 -11.57820 -11.26145 -11.21903 -11.10134 -10.85763 -10.78271 -10.66158 -10.56172 -10.31451 -9.88131 -9.51036 -9.37140 -9.19172 -8.64440 -8.51398 -7.50907 -6.12001 -4.10049 2.09505 2.67352 3.08367 3.23547 3.32005 3.33567 4.35065 4.36312 4.52342 4.58815 4.62690 4.88052 5.05236 5.11250 5.16105 5.19733 5.27629 5.33402 5.34742 5.44640 5.48962 5.55457 5.63779 5.69726 5.71428 5.75551 5.83901 5.95650 5.99776 6.12744 6.15075 6.33644 6.39768 6.44301 6.60449 6.74278 6.76373 6.88528 7.49617 7.51747 7.78747 7.91791 8.24899 8.56603 8.95002 9.49538 11.00819 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025907 B = 0.004073 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.515414 B = 6872.225134 C = 7399.405760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.875 3.125 4 H -0.278 1.278 5 H -0.267 1.267 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.081 0.919 9 C 0.162 3.838 10 N -0.526 5.526 11 C 0.049 3.951 12 C 0.106 3.894 13 N -0.608 5.608 14 C 0.519 3.481 15 O -0.551 6.551 16 C -0.108 4.108 17 H 0.096 0.904 18 C -0.080 4.080 19 C -0.149 4.149 20 C -0.158 4.158 21 C -0.091 4.091 22 C -0.099 4.099 23 C 0.118 3.882 24 C 0.039 3.961 25 H 0.264 0.736 26 H 0.030 0.970 27 H -0.016 1.016 28 H 0.025 0.975 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.151 -13.464 7.947 19.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.204 1.204 5 H -0.192 1.192 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.099 0.901 9 C 0.036 3.964 10 N -0.250 5.250 11 C -0.080 4.080 12 C -0.016 4.016 13 N -0.340 5.340 14 C 0.307 3.693 15 O -0.429 6.429 16 C -0.129 4.129 17 H 0.114 0.886 18 C -0.117 4.117 19 C -0.167 4.167 20 C -0.176 4.176 21 C -0.128 4.128 22 C -0.137 4.137 23 C -0.005 4.005 24 C -0.091 4.091 25 H 0.074 0.926 26 H 0.048 0.952 27 H 0.002 0.998 28 H 0.044 0.956 29 H 0.121 0.879 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 11.359 -13.648 7.348 19.217 hybrid contribution 0.566 1.576 0.728 1.826 sum 11.925 -12.072 8.077 18.793 Atomic orbital electron populations 1.69887 1.06112 1.26934 1.50777 1.24889 0.94729 0.98854 0.94732 0.86869 0.80357 0.84057 0.78478 1.20363 1.19214 1.21093 1.21004 0.88573 0.94743 1.50703 0.90050 1.20190 0.97178 0.83772 0.95214 1.61899 1.10123 1.19190 1.33821 1.22379 1.03021 0.91737 0.90833 1.22085 0.80478 0.98205 1.00871 1.48269 1.10234 1.45337 1.30204 1.20581 0.85253 0.78803 0.84632 1.90651 1.19115 1.63107 1.70022 1.21411 1.01883 0.96818 0.92810 0.88595 1.20366 1.03034 0.97330 0.90990 1.21995 1.01052 0.95625 0.98077 1.22063 1.01450 0.95060 0.99069 1.20485 1.01103 0.97483 0.93764 1.21430 0.99283 0.94833 0.98169 1.21720 1.00097 0.90757 0.87884 1.22458 0.90324 0.95434 1.00863 0.92588 0.95167 0.99831 0.95649 0.87879 0.90385 0.89777 0.90306 0.90205 0.87532 0.87887 0.90720 0.90791 0.91284 0.90801 0.90845 0.89442 0.90045 0.95525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 13.96 55.43 0.77 -25.94 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 20.98 27.47 -169.99 -4.67 16.31 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.51 -13.91 8.96 -34.44 -0.31 -14.22 16 8 H 0.08 2.38 7.37 -52.49 -0.39 2.00 16 9 C 0.16 3.78 3.79 -4.97 -0.02 3.76 16 10 N -0.53 -10.36 4.62 -235.77 -1.09 -11.45 16 11 C 0.05 0.86 5.46 -3.70 -0.02 0.84 16 12 C 0.11 1.47 6.42 -3.60 -0.02 1.45 16 13 N -0.61 -8.86 3.01 -172.46 -0.52 -9.38 16 14 C 0.52 7.52 6.80 -10.99 -0.07 7.45 16 15 O -0.55 -9.61 15.73 5.56 0.09 -9.53 16 16 C -0.11 -1.22 1.73 -91.55 -0.16 -1.38 16 17 H 0.10 0.98 6.32 -51.93 -0.33 0.65 16 18 C -0.08 -0.86 5.36 -28.18 -0.15 -1.01 16 19 C -0.15 -1.40 9.80 -35.90 -0.35 -1.76 16 20 C -0.16 -1.37 9.80 -35.91 -0.35 -1.73 16 21 C -0.09 -0.76 6.12 -28.18 -0.17 -0.93 16 22 C -0.10 -1.04 4.72 -26.51 -0.13 -1.16 16 23 C 0.12 1.78 6.58 -3.60 -0.02 1.75 16 24 C 0.04 0.65 5.62 -3.70 -0.02 0.62 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.03 0.72 7.03 -51.93 -0.36 0.35 16 27 H -0.02 -0.38 7.55 -51.93 -0.39 -0.77 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.10 1.98 6.67 -51.93 -0.35 1.63 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.08 0.95 5.22 -51.93 -0.27 0.68 16 32 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 33 H 0.08 0.86 7.81 -51.92 -0.41 0.45 16 34 H 0.11 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.10 0.75 8.06 -52.48 -0.42 0.33 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.09 1.31 7.09 -51.93 -0.37 0.94 16 42 H 0.08 1.30 7.99 -51.93 -0.41 0.88 16 43 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 332.82 15.07 5.02 5.02 Total: -1.00 -30.90 332.82 -9.39 -40.29 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.09 Total: -0.88 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -1.90 Total: -4.44 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.83 Total: -46.78 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.90 -9.39 -40.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602209516.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.246 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds