Wall clock time and date at job start Tue Mar 31 2020 00:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00038 * 2 1 4 4 H 1.48505 * 109.46821 * 90.00411 * 3 2 1 5 5 H 1.48502 * 109.47115 * 210.00252 * 3 2 1 6 6 H 1.48499 * 109.47402 * 330.00293 * 3 2 1 7 7 C 1.37881 * 119.99583 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00012 * 359.97438 * 7 2 1 9 9 C 1.50707 * 119.99478 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.46646 * 179.97438 * 9 7 2 11 11 C 1.46896 * 110.99968 * 294.29504 * 10 9 7 12 12 C 1.53241 * 109.34093 * 172.74744 * 11 10 9 13 13 N 1.47083 * 108.51958 * 53.83397 * 12 11 10 14 14 C 1.34776 * 120.88394 * 128.79356 * 13 12 11 15 15 O 1.21278 * 120.00060 * 175.26985 * 14 13 12 16 16 C 1.50698 * 119.99726 * 355.26298 * 14 13 12 17 17 H 1.09006 * 109.64047 * 34.83003 * 16 14 13 18 18 C 1.53028 * 109.64413 * 274.18861 * 16 14 13 19 19 C 1.50063 * 110.14688 * 190.87856 * 18 16 14 20 20 C 1.29448 * 124.07477 * 17.13752 * 19 18 16 21 21 C 1.50059 * 124.07725 * 359.52315 * 20 19 18 22 22 C 1.53023 * 110.14741 * 17.13821 * 21 20 19 23 23 C 1.47083 * 118.23398 * 308.81455 * 13 12 11 24 24 C 1.46895 * 110.99852 * 169.99452 * 10 9 7 25 25 H 0.97003 * 119.99995 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46685 * 299.99384 * 9 7 2 27 27 H 1.08996 * 109.47316 * 59.99824 * 9 7 2 28 28 H 1.08995 * 109.49590 * 292.70877 * 11 10 9 29 29 H 1.09000 * 109.49158 * 52.79316 * 11 10 9 30 30 H 1.08991 * 109.63026 * 294.12432 * 12 11 10 31 31 H 1.09007 * 109.62820 * 173.54023 * 12 11 10 32 32 H 1.08991 * 109.35994 * 311.08953 * 18 16 14 33 33 H 1.09007 * 109.35317 * 70.67619 * 18 16 14 34 34 H 1.08001 * 117.96744 * 197.10911 * 19 18 16 35 35 H 1.08007 * 117.95708 * 179.54872 * 20 19 18 36 36 H 1.08992 * 109.36217 * 256.92451 * 21 20 19 37 37 H 1.09007 * 109.24456 * 137.27065 * 21 20 19 38 38 H 1.08994 * 109.64387 * 190.88023 * 22 21 20 39 39 H 1.08994 * 109.82144 * 70.34827 * 22 21 20 40 40 H 1.08994 * 109.62848 * 291.47654 * 23 13 12 41 41 H 1.09000 * 109.62495 * 170.89619 * 23 13 12 42 42 H 1.08997 * 109.49863 * 307.21534 * 24 10 9 43 43 H 1.09005 * 109.49516 * 67.29268 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 1.4001 5 1 3.5467 1.4401 -0.7001 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0011 -2.5791 -0.0001 11 6 3.6441 -3.2638 1.2496 12 6 4.0098 -4.7477 1.1376 13 7 5.4258 -4.8522 0.7539 14 6 6.2757 -5.6319 1.4512 15 8 7.4186 -5.7741 1.0712 16 6 5.8059 -6.3268 2.7031 17 1 4.7626 -6.6211 2.5893 18 6 5.9516 -5.3846 3.9001 19 6 5.7421 -6.1390 5.1803 20 6 5.7936 -7.4287 5.2788 21 6 6.0598 -8.3502 4.1248 22 6 6.6677 -7.5703 2.9569 23 6 5.8898 -4.0829 -0.4107 24 6 5.4500 -2.6253 -0.2378 25 1 -0.4850 0.8401 0.0004 26 1 3.8751 -0.6797 -0.8895 27 1 3.8745 -0.6809 0.8905 28 1 4.1914 -2.8159 2.0789 29 1 2.5728 -3.1655 1.4249 30 1 3.3886 -5.2216 0.3777 31 1 3.8539 -5.2368 2.0993 32 1 6.9505 -4.9484 3.8971 33 1 5.2114 -4.5879 3.8249 34 1 5.5360 -5.5706 6.0752 35 1 5.6346 -7.8688 6.2522 36 1 5.1241 -8.8086 3.8051 37 1 6.7545 -9.1289 4.4397 38 1 6.6792 -8.1963 2.0648 39 1 7.6848 -7.2669 3.2047 40 1 5.4492 -4.4929 -1.3194 41 1 6.9769 -4.1326 -0.4727 42 1 5.6885 -2.0638 -1.1411 43 1 5.9723 -2.1862 0.6123 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602209516.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:51 Heat of formation + Delta-G solvation = -36.541544 kcal Electronic energy + Delta-G solvation = -22298.667536 eV Core-core repulsion = 19149.871818 eV Total energy + Delta-G solvation = -3148.795718 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.60145 -39.46706 -38.36694 -35.99996 -34.44424 -32.84101 -31.82775 -31.54900 -30.42545 -27.45904 -25.15990 -24.53348 -23.93426 -23.10419 -21.77812 -19.85625 -19.00806 -18.90897 -18.12471 -17.33905 -16.56440 -16.39136 -16.31119 -16.05956 -15.73764 -15.26999 -15.01850 -14.62237 -14.46132 -14.43544 -14.26329 -13.86791 -13.68618 -13.26650 -13.18074 -13.10636 -12.88327 -12.54856 -12.43713 -12.24950 -11.95413 -11.91244 -11.81444 -11.65913 -11.40074 -11.33158 -10.78299 -10.63652 -9.88106 -9.79143 -9.07981 -8.27577 -6.30506 1.34650 1.36993 1.40579 1.46681 1.54245 1.93372 2.34456 3.04136 3.14394 3.37720 3.71765 3.78436 3.90076 4.00569 4.12895 4.19753 4.22569 4.29490 4.38787 4.39626 4.43727 4.55843 4.63193 4.67484 4.71232 4.80430 4.82643 4.89214 4.92753 4.99786 5.03435 5.06758 5.12633 5.24355 5.32900 5.44123 5.53079 5.76880 5.92516 6.05943 6.28123 6.38866 6.59885 6.75722 7.08814 7.33189 8.88379 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025907 B = 0.004073 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.515414 B = 6872.225134 C = 7399.405760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.013 3.987 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.251 1.251 6 H -0.283 1.283 7 C -0.513 4.513 8 H 0.046 0.954 9 C 0.172 3.828 10 N -0.539 5.539 11 C 0.051 3.949 12 C 0.118 3.882 13 N -0.610 5.610 14 C 0.518 3.482 15 O -0.582 6.582 16 C -0.104 4.104 17 H 0.112 0.888 18 C -0.077 4.077 19 C -0.165 4.165 20 C -0.152 4.152 21 C -0.089 4.089 22 C -0.098 4.098 23 C 0.123 3.877 24 C 0.043 3.957 25 H 0.266 0.734 26 H 0.030 0.970 27 H -0.016 1.016 28 H 0.026 0.974 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.114 0.886 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.302 -14.162 8.863 20.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.185 4.185 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.175 1.175 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.064 0.936 9 C 0.045 3.955 10 N -0.264 5.264 11 C -0.078 4.078 12 C -0.004 4.004 13 N -0.342 5.342 14 C 0.308 3.692 15 O -0.462 6.462 16 C -0.125 4.125 17 H 0.130 0.870 18 C -0.114 4.114 19 C -0.183 4.183 20 C -0.170 4.170 21 C -0.126 4.126 22 C -0.136 4.136 23 C 0.000 4.000 24 C -0.086 4.086 25 H 0.075 0.925 26 H 0.048 0.952 27 H 0.002 0.998 28 H 0.045 0.955 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.132 0.868 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.134 0.866 35 H 0.139 0.861 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 12.522 -14.366 8.270 20.775 hybrid contribution 0.200 1.698 0.436 1.764 sum 12.722 -12.668 8.705 19.953 Atomic orbital electron populations 1.70030 1.07961 1.28036 1.52494 1.25750 0.95501 1.02796 0.94476 0.85806 0.79499 0.79209 0.78956 1.19523 1.17522 1.20831 1.21220 0.90710 0.93449 1.49797 0.93575 1.19946 0.94551 0.86041 0.94990 1.61810 1.12176 1.17172 1.35199 1.22347 1.01551 0.93925 0.89975 1.22025 0.80042 0.95751 1.02624 1.48345 1.10495 1.45289 1.30075 1.21148 0.84648 0.78296 0.85083 1.90636 1.20475 1.64207 1.70928 1.21462 1.02777 0.96976 0.91256 0.86968 1.20312 1.02175 0.97334 0.91575 1.22007 1.02504 0.96083 0.97660 1.22288 0.99956 0.94828 0.99960 1.20521 1.01944 0.97450 0.92692 1.21415 0.98475 0.94594 0.99088 1.21637 1.00230 0.89743 0.88415 1.22487 0.88192 0.96818 1.01138 0.92451 0.95157 0.99834 0.95530 0.90288 0.90179 0.86770 0.91779 0.90412 0.86564 0.86065 0.89363 0.89311 0.91598 0.92380 0.90377 0.89184 0.89211 0.95697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.33 13.96 21.45 0.30 -57.03 16 2 C 0.01 0.71 5.47 84.66 0.46 1.17 16 3 Si 0.94 42.97 27.47 68.60 1.88 44.86 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.51 -28.37 8.96 25.60 0.23 -28.14 16 8 H 0.05 2.81 7.37 -2.91 -0.02 2.79 16 9 C 0.17 7.91 3.79 85.56 0.32 8.23 16 10 N -0.54 -20.97 4.62 -899.84 -4.16 -25.13 16 11 C 0.05 1.75 5.46 86.38 0.47 2.22 16 12 C 0.12 3.09 6.42 86.35 0.55 3.65 16 13 N -0.61 -16.94 3.01 -817.94 -2.46 -19.40 16 14 C 0.52 14.38 6.80 87.66 0.60 14.97 16 15 O -0.58 -19.93 15.73 -3.02 -0.05 -19.98 16 16 C -0.10 -2.15 1.73 -11.40 -0.02 -2.17 16 17 H 0.11 1.96 6.32 -2.38 -0.02 1.95 16 18 C -0.08 -1.53 5.36 29.66 0.16 -1.37 16 19 C -0.16 -2.74 9.80 27.03 0.27 -2.47 16 20 C -0.15 -2.20 9.80 27.03 0.26 -1.93 16 21 C -0.09 -1.23 6.12 29.66 0.18 -1.04 16 22 C -0.10 -1.87 4.72 30.74 0.15 -1.73 16 23 C 0.12 3.54 6.58 86.35 0.57 4.11 16 24 C 0.04 1.37 5.62 86.38 0.49 1.85 16 25 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 26 H 0.03 1.40 7.03 -2.39 -0.02 1.38 16 27 H -0.02 -0.74 7.55 -2.39 -0.02 -0.75 16 28 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 3.10 6.67 -2.39 -0.02 3.09 16 30 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.11 2.31 5.22 -2.38 -0.01 2.29 16 32 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 33 H 0.08 1.56 7.81 -2.38 -0.02 1.54 16 34 H 0.12 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.12 1.34 8.06 -2.91 -0.02 1.32 16 36 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.06 1.29 8.09 -2.39 -0.02 1.27 16 40 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.09 2.59 7.09 -2.39 -0.02 2.58 16 42 H 0.09 2.73 7.99 -2.39 -0.02 2.71 16 43 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -66.94 332.82 1.12 -65.82 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.92 Total: 13.52 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 4.69 Total: -2.66 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -6.32 Total: -101.55 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -0.05 Total: -19.98 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.88 Total: 44.86 kcal Total: -66.94 1.12 -65.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602209516.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.275 kcal (2) G-P(sol) polarization free energy of solvation -66.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds