Wall clock time and date at job start Tue Mar 31 2020 00:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00461 * 2 1 4 4 H 1.48489 * 109.46983 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46698 * 299.99934 * 3 2 1 6 6 H 1.48495 * 109.46897 * 59.99728 * 3 2 1 7 7 C 1.37880 * 119.99363 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99275 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00313 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.46906 * 110.99801 * 170.00134 * 10 9 7 12 12 C 1.53235 * 109.34079 * 187.25100 * 11 10 9 13 13 N 1.47081 * 108.52054 * 306.16959 * 12 11 10 14 14 C 1.34774 * 120.88114 * 231.16282 * 13 12 11 15 15 O 1.21278 * 119.99884 * 180.02562 * 14 13 12 16 16 C 1.50702 * 119.99692 * 0.02562 * 14 13 12 17 17 C 1.53002 * 109.46868 * 180.02562 * 16 14 13 18 18 H 1.09003 * 110.34503 * 52.71255 * 17 16 14 19 19 C 1.51104 * 110.38871 * 290.30626 * 17 16 14 20 20 C 1.30530 * 111.10147 * 224.75619 * 19 17 16 21 21 C 1.51100 * 111.10483 * 359.97438 * 20 19 17 22 22 C 1.54630 * 104.72807 * 16.44228 * 21 20 19 23 23 C 1.47082 * 118.23500 * 51.18575 * 13 12 11 24 24 C 1.46896 * 110.99912 * 294.29778 * 10 9 7 25 25 H 0.97003 * 119.99498 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.46926 * 59.99689 * 9 7 2 27 27 H 1.09004 * 109.47047 * 299.99905 * 9 7 2 28 28 H 1.08997 * 109.48796 * 307.21122 * 11 10 9 29 29 H 1.08997 * 109.49279 * 67.28994 * 11 10 9 30 30 H 1.09002 * 109.62473 * 65.87852 * 12 11 10 31 31 H 1.09000 * 109.62576 * 186.45954 * 12 11 10 32 32 H 1.09000 * 109.47359 * 299.99606 * 16 14 13 33 33 H 1.09000 * 109.47254 * 60.00386 * 16 14 13 34 34 H 1.08000 * 124.44498 * 44.72484 * 19 17 16 35 35 H 1.08002 * 124.44564 * 179.97438 * 20 19 17 36 36 H 1.09007 * 110.38596 * 257.62944 * 21 20 19 37 37 H 1.08999 * 110.48261 * 135.30457 * 21 20 19 38 38 H 1.08994 * 111.04030 * 217.33586 * 22 21 20 39 39 H 1.08994 * 111.07097 * 93.41163 * 22 21 20 40 40 H 1.09001 * 109.62379 * 189.10499 * 23 13 12 41 41 H 1.08995 * 109.78775 * 68.62332 * 23 13 12 42 42 H 1.09001 * 109.49756 * 292.70738 * 24 10 9 43 43 H 1.08998 * 109.49494 * 52.76550 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2508 -2.4992 0.0005 10 7 2.2054 -3.6158 0.0018 11 6 1.5207 -4.8935 0.2399 12 6 2.5630 -6.0031 0.4140 13 7 3.4617 -5.9867 -0.7502 14 6 3.7129 -7.1132 -1.4462 15 8 4.4569 -7.0815 -2.4033 16 6 3.0690 -8.4122 -1.0349 17 6 3.5178 -9.5263 -1.9827 18 1 4.6056 -9.5548 -2.0459 19 6 2.9136 -9.3267 -3.3533 20 6 2.4458 -10.4487 -3.8286 21 6 2.6606 -11.5838 -2.8546 22 6 2.9706 -10.8920 -1.5069 23 6 4.0795 -4.7084 -1.1344 24 6 2.9774 -3.6497 -1.2475 25 1 -0.4849 0.8401 -0.0004 26 1 0.6245 -2.5571 -0.8896 27 1 0.6238 -2.5567 0.8903 28 1 0.9149 -4.8186 1.1429 29 1 0.8797 -5.1266 -0.6103 30 1 3.1380 -5.8260 1.3229 31 1 2.0623 -6.9693 0.4764 32 1 3.3684 -8.6597 -0.0165 33 1 1.9847 -8.3108 -1.0805 34 1 2.8736 -8.3798 -3.8712 35 1 1.9680 -10.5522 -4.7916 36 1 3.5039 -12.1990 -3.1685 37 1 1.7590 -12.1907 -2.7714 38 1 3.7270 -11.4437 -0.9487 39 1 2.0649 -10.7652 -0.9140 40 1 4.5813 -4.8186 -2.0957 41 1 4.8021 -4.4053 -0.3768 42 1 2.3162 -3.9003 -2.0771 43 1 3.4276 -2.6728 -1.4236 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602210303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:35 Heat of formation + Delta-G solvation = -15.473121 kcal Electronic energy + Delta-G solvation = -21806.893692 eV Core-core repulsion = 18659.011569 eV Total energy + Delta-G solvation = -3147.882123 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.22545 -38.66955 -37.32039 -34.40150 -32.46824 -31.90703 -30.55745 -29.07928 -28.31219 -25.95001 -25.08513 -23.09643 -22.08093 -20.87549 -20.38120 -18.94420 -18.41977 -17.02017 -16.41611 -16.10628 -15.80553 -15.23455 -15.03305 -14.71735 -14.44487 -13.91891 -13.65448 -13.48603 -13.29966 -12.50604 -12.40766 -12.12774 -12.02085 -11.99243 -11.86918 -11.42643 -11.30414 -11.25675 -11.15947 -10.89968 -10.85890 -10.73412 -10.60907 -10.53037 -9.89951 -9.58203 -9.26591 -9.00220 -8.51369 -8.41737 -7.34973 -6.07982 -4.09703 2.20787 2.76861 3.15732 3.28343 3.36039 3.40656 4.35915 4.38382 4.45400 4.65975 4.76211 4.78276 5.06904 5.18064 5.24479 5.27282 5.31387 5.36484 5.40609 5.48090 5.50894 5.61576 5.65453 5.69852 5.76490 5.81795 5.95144 6.01041 6.03164 6.12464 6.18852 6.40045 6.48449 6.52590 6.74598 6.81247 7.19891 7.25795 7.58815 7.73432 7.99072 8.09970 8.32159 8.45827 8.97905 9.55058 11.02932 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039398 B = 0.003218 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.525144 B = 8698.213876 C = 8830.637292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.535 5.535 11 C 0.039 3.961 12 C 0.112 3.888 13 N -0.610 5.610 14 C 0.512 3.488 15 O -0.548 6.548 16 C -0.132 4.132 17 C -0.054 4.054 18 H 0.090 0.910 19 C -0.138 4.138 20 C -0.186 4.186 21 C -0.098 4.098 22 C -0.123 4.123 23 C 0.115 3.885 24 C 0.052 3.948 25 H 0.261 0.739 26 H -0.009 1.009 27 H 0.032 0.968 28 H 0.081 0.919 29 H 0.026 0.974 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.023 0.977 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.207 -20.496 -1.372 20.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.090 4.090 12 C -0.011 4.011 13 N -0.343 5.343 14 C 0.300 3.700 15 O -0.426 6.426 16 C -0.171 4.171 17 C -0.072 4.072 18 H 0.108 0.892 19 C -0.156 4.156 20 C -0.203 4.203 21 C -0.135 4.135 22 C -0.160 4.160 23 C -0.008 4.008 24 C -0.077 4.077 25 H 0.071 0.929 26 H 0.009 0.991 27 H 0.050 0.950 28 H 0.100 0.900 29 H 0.045 0.955 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.042 0.958 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.775 -20.274 -1.479 20.881 hybrid contribution -0.392 1.019 -0.620 1.255 sum 4.383 -19.255 -2.099 19.859 Atomic orbital electron populations 1.69968 1.06095 1.26756 1.50932 1.24997 0.94873 0.99390 0.95345 0.86436 0.80097 0.83347 0.77533 1.19599 1.21097 1.20987 1.21181 0.93538 0.89857 1.50171 0.91737 1.19729 0.90000 0.87237 0.96170 1.62090 1.27869 1.02547 1.33566 1.22397 0.94840 0.90909 1.00892 1.21914 0.91822 0.99022 0.88358 1.48271 1.46902 1.08739 1.30389 1.20642 0.81496 0.85247 0.82570 1.90663 1.37940 1.86001 1.28026 1.21737 1.01945 0.92541 1.00918 1.20831 1.00985 0.92919 0.92485 0.89233 1.23318 0.97198 0.98550 0.96500 1.23227 1.02088 0.95107 0.99920 1.21318 1.01325 0.97116 0.93745 1.22562 1.01142 0.95228 0.97078 1.21822 0.95833 0.81815 1.01315 1.22334 0.95168 0.99204 0.91039 0.92925 0.99122 0.95038 0.90043 0.95544 0.90616 0.90184 0.88858 0.88853 0.85793 0.86146 0.91009 0.91429 0.90891 0.90869 0.89501 0.91069 0.95830 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.31 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -13.94 8.41 -34.44 -0.29 -14.23 16 8 H 0.06 1.75 7.13 -52.49 -0.37 1.37 16 9 C 0.19 4.89 4.72 -4.98 -0.02 4.87 16 10 N -0.54 -11.04 4.62 -235.77 -1.09 -12.13 16 11 C 0.04 0.65 5.62 -3.70 -0.02 0.63 16 12 C 0.11 1.46 6.50 -3.60 -0.02 1.44 16 13 N -0.61 -9.05 3.01 -172.46 -0.52 -9.57 16 14 C 0.51 7.39 7.51 -10.99 -0.08 7.30 16 15 O -0.55 -9.59 14.37 5.56 0.08 -9.51 16 16 C -0.13 -1.37 3.46 -27.88 -0.10 -1.47 16 17 C -0.05 -0.56 2.52 -90.72 -0.23 -0.79 16 18 H 0.09 1.05 7.90 -51.93 -0.41 0.64 16 19 C -0.14 -1.61 9.26 -35.70 -0.33 -1.94 16 20 C -0.19 -1.85 10.77 -35.70 -0.38 -2.23 16 21 C -0.10 -0.80 6.81 -26.83 -0.18 -0.99 16 22 C -0.12 -0.98 6.71 -25.02 -0.17 -1.15 16 23 C 0.11 1.88 6.60 -3.60 -0.02 1.86 16 24 C 0.05 0.99 5.46 -3.70 -0.02 0.97 16 25 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 26 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 27 H 0.03 0.84 7.97 -51.93 -0.41 0.43 16 28 H 0.08 1.28 7.99 -51.93 -0.41 0.87 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 0.78 6.02 -51.93 -0.31 0.47 16 32 H 0.09 0.78 8.00 -51.93 -0.42 0.36 16 33 H 0.09 0.90 7.65 -51.93 -0.40 0.50 16 34 H 0.12 1.66 7.58 -52.49 -0.40 1.27 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.53 7.91 -51.93 -0.41 0.12 16 40 H 0.09 1.44 7.06 -51.93 -0.37 1.08 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.10 1.99 6.67 -51.93 -0.35 1.64 16 LS Contribution 339.31 15.07 5.11 5.11 Total: -1.00 -31.09 339.31 -9.87 -40.96 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -7.20 Total: -1.34 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -1.97 Total: -4.27 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.87 Total: -47.27 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.08 Total: -9.51 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.09 -9.87 -40.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.484 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds