Wall clock time and date at job start Tue Mar 31 2020 00:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00461 * 2 1 4 4 H 1.48489 * 109.46983 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46698 * 299.99934 * 3 2 1 6 6 H 1.48495 * 109.46897 * 59.99728 * 3 2 1 7 7 C 1.37880 * 119.99363 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99275 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00313 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.46906 * 110.99801 * 170.00134 * 10 9 7 12 12 C 1.53235 * 109.34079 * 187.25100 * 11 10 9 13 13 N 1.47081 * 108.52054 * 306.16959 * 12 11 10 14 14 C 1.34774 * 120.88114 * 231.16282 * 13 12 11 15 15 O 1.21278 * 119.99884 * 180.02562 * 14 13 12 16 16 C 1.50702 * 119.99692 * 0.02562 * 14 13 12 17 17 C 1.53002 * 109.46868 * 180.02562 * 16 14 13 18 18 H 1.09003 * 110.34503 * 52.71255 * 17 16 14 19 19 C 1.51104 * 110.38871 * 290.30626 * 17 16 14 20 20 C 1.30530 * 111.10147 * 224.75619 * 19 17 16 21 21 C 1.51100 * 111.10483 * 359.97438 * 20 19 17 22 22 C 1.54630 * 104.72807 * 16.44228 * 21 20 19 23 23 C 1.47082 * 118.23500 * 51.18575 * 13 12 11 24 24 C 1.46896 * 110.99912 * 294.29778 * 10 9 7 25 25 H 0.97003 * 119.99498 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.46926 * 59.99689 * 9 7 2 27 27 H 1.09004 * 109.47047 * 299.99905 * 9 7 2 28 28 H 1.08997 * 109.48796 * 307.21122 * 11 10 9 29 29 H 1.08997 * 109.49279 * 67.28994 * 11 10 9 30 30 H 1.09002 * 109.62473 * 65.87852 * 12 11 10 31 31 H 1.09000 * 109.62576 * 186.45954 * 12 11 10 32 32 H 1.09000 * 109.47359 * 299.99606 * 16 14 13 33 33 H 1.09000 * 109.47254 * 60.00386 * 16 14 13 34 34 H 1.08000 * 124.44498 * 44.72484 * 19 17 16 35 35 H 1.08002 * 124.44564 * 179.97438 * 20 19 17 36 36 H 1.09007 * 110.38596 * 257.62944 * 21 20 19 37 37 H 1.08999 * 110.48261 * 135.30457 * 21 20 19 38 38 H 1.08994 * 111.04030 * 217.33586 * 22 21 20 39 39 H 1.08994 * 111.07097 * 93.41163 * 22 21 20 40 40 H 1.09001 * 109.62379 * 189.10499 * 23 13 12 41 41 H 1.08995 * 109.78775 * 68.62332 * 23 13 12 42 42 H 1.09001 * 109.49756 * 292.70738 * 24 10 9 43 43 H 1.08998 * 109.49494 * 52.76550 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2508 -2.4992 0.0005 10 7 2.2054 -3.6158 0.0018 11 6 1.5207 -4.8935 0.2399 12 6 2.5630 -6.0031 0.4140 13 7 3.4617 -5.9867 -0.7502 14 6 3.7129 -7.1132 -1.4462 15 8 4.4569 -7.0815 -2.4033 16 6 3.0690 -8.4122 -1.0349 17 6 3.5178 -9.5263 -1.9827 18 1 4.6056 -9.5548 -2.0459 19 6 2.9136 -9.3267 -3.3533 20 6 2.4458 -10.4487 -3.8286 21 6 2.6606 -11.5838 -2.8546 22 6 2.9706 -10.8920 -1.5069 23 6 4.0795 -4.7084 -1.1344 24 6 2.9774 -3.6497 -1.2475 25 1 -0.4849 0.8401 -0.0004 26 1 0.6245 -2.5571 -0.8896 27 1 0.6238 -2.5567 0.8903 28 1 0.9149 -4.8186 1.1429 29 1 0.8797 -5.1266 -0.6103 30 1 3.1380 -5.8260 1.3229 31 1 2.0623 -6.9693 0.4764 32 1 3.3684 -8.6597 -0.0165 33 1 1.9847 -8.3108 -1.0805 34 1 2.8736 -8.3798 -3.8712 35 1 1.9680 -10.5522 -4.7916 36 1 3.5039 -12.1990 -3.1685 37 1 1.7590 -12.1907 -2.7714 38 1 3.7270 -11.4437 -0.9487 39 1 2.0649 -10.7652 -0.9140 40 1 4.5813 -4.8186 -2.0957 41 1 4.8021 -4.4053 -0.3768 42 1 2.3162 -3.9003 -2.0771 43 1 3.4276 -2.6728 -1.4236 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602210303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:34 Heat of formation + Delta-G solvation = -34.820957 kcal Electronic energy + Delta-G solvation = -21807.732677 eV Core-core repulsion = 18659.011569 eV Total energy + Delta-G solvation = -3148.721108 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.35201 -39.65710 -38.62102 -35.96471 -34.40883 -32.96270 -31.76584 -30.04394 -29.74382 -27.43734 -26.28691 -24.42409 -23.85095 -22.09387 -21.29112 -20.01238 -19.43059 -18.50439 -18.14278 -17.12663 -16.79740 -16.63974 -16.32973 -16.01826 -15.86840 -15.38443 -15.30525 -14.63557 -14.52892 -14.10504 -13.68168 -13.48233 -13.07181 -12.92998 -12.79866 -12.73242 -12.65901 -12.59412 -12.35007 -12.31476 -12.19215 -12.03172 -11.93105 -11.73810 -11.67377 -11.31497 -10.72686 -10.62975 -9.78493 -9.73794 -9.07100 -8.22664 -6.32407 1.38904 1.40459 1.41316 1.54605 1.65463 2.01199 2.39244 3.09839 3.22133 3.48056 3.74384 3.84205 3.99236 4.01509 4.08554 4.23437 4.28961 4.36035 4.43627 4.44960 4.57838 4.64468 4.68946 4.75366 4.77492 4.84681 4.91650 4.99764 5.01718 5.03576 5.12336 5.15953 5.22601 5.31422 5.45530 5.47633 5.62701 5.70073 5.98889 6.01679 6.19815 6.47259 6.58375 6.83400 7.18610 7.37511 8.88706 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039398 B = 0.003218 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.525144 B = 8698.213876 C = 8830.637292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.064 0.936 9 C 0.208 3.792 10 N -0.539 5.539 11 C 0.034 3.966 12 C 0.121 3.879 13 N -0.615 5.615 14 C 0.508 3.492 15 O -0.584 6.584 16 C -0.124 4.124 17 C -0.053 4.053 18 H 0.071 0.929 19 C -0.171 4.171 20 C -0.174 4.174 21 C -0.100 4.100 22 C -0.114 4.114 23 C 0.126 3.874 24 C 0.058 3.942 25 H 0.264 0.736 26 H -0.043 1.043 27 H 0.012 0.988 28 H 0.090 0.910 29 H 0.018 0.982 30 H 0.088 0.912 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.127 0.873 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.007 0.993 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.761 -22.512 -0.042 23.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.793 3.207 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.082 0.918 9 C 0.082 3.918 10 N -0.264 5.264 11 C -0.095 4.095 12 C -0.002 4.002 13 N -0.348 5.348 14 C 0.298 3.702 15 O -0.465 6.465 16 C -0.163 4.163 17 C -0.071 4.071 18 H 0.089 0.911 19 C -0.189 4.189 20 C -0.192 4.192 21 C -0.136 4.136 22 C -0.152 4.152 23 C 0.002 3.998 24 C -0.071 4.071 25 H 0.073 0.927 26 H -0.025 1.025 27 H 0.030 0.970 28 H 0.109 0.891 29 H 0.036 0.964 30 H 0.106 0.894 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.144 0.856 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.025 0.975 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.332 -22.322 -0.136 22.950 hybrid contribution -0.600 1.592 -1.114 2.033 sum 4.732 -20.730 -1.250 21.300 Atomic orbital electron populations 1.70086 1.07709 1.27858 1.51818 1.25900 0.95729 1.03175 0.94809 0.85347 0.79041 0.78657 0.77671 1.18665 1.20683 1.20271 1.21495 0.93683 0.91030 1.49947 0.91762 1.19376 0.90016 0.88821 0.93552 1.62014 1.27069 1.03293 1.33985 1.22576 0.96024 0.89994 1.00882 1.22027 0.90772 0.99475 0.87880 1.48387 1.47136 1.08194 1.31070 1.21442 0.80851 0.86228 0.81637 1.90650 1.39660 1.86607 1.29581 1.21816 1.02264 0.89804 1.02448 1.20821 0.99905 0.94551 0.91866 0.91064 1.23266 0.99639 0.98041 0.97961 1.23527 1.00071 0.95285 1.00295 1.21396 1.02421 0.96538 0.93286 1.22574 1.02112 0.93333 0.97134 1.21548 0.94659 0.82069 1.01483 1.22237 0.95443 0.99425 0.89982 0.92675 1.02518 0.96968 0.89135 0.96396 0.89370 0.85819 0.85616 0.87403 0.88766 0.85559 0.90254 0.89742 0.89252 0.89388 0.89998 0.90323 0.97521 0.90498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.87 13.29 21.45 0.28 -55.58 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.52 -29.31 8.41 25.60 0.22 -29.10 16 8 H 0.06 3.53 7.13 -2.91 -0.02 3.51 16 9 C 0.21 10.94 4.72 85.56 0.40 11.35 16 10 N -0.54 -22.53 4.62 -899.85 -4.16 -26.69 16 11 C 0.03 1.10 5.62 86.38 0.49 1.59 16 12 C 0.12 2.80 6.50 86.35 0.56 3.36 16 13 N -0.61 -17.37 3.01 -817.94 -2.46 -19.83 16 14 C 0.51 14.01 7.51 87.66 0.66 14.67 16 15 O -0.58 -20.63 14.37 -3.02 -0.04 -20.67 16 16 C -0.12 -2.21 3.46 29.85 0.10 -2.11 16 17 C -0.05 -1.01 2.52 -10.86 -0.03 -1.03 16 18 H 0.07 1.61 7.90 -2.39 -0.02 1.59 16 19 C -0.17 -3.93 9.26 26.26 0.24 -3.69 16 20 C -0.17 -3.22 10.77 26.26 0.28 -2.93 16 21 C -0.10 -1.33 6.81 30.53 0.21 -1.12 16 22 C -0.11 -1.41 6.71 31.70 0.21 -1.20 16 23 C 0.13 4.13 6.60 86.35 0.57 4.70 16 24 C 0.06 2.32 5.46 86.38 0.47 2.79 16 25 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 26 H -0.04 -2.49 8.12 -2.39 -0.02 -2.51 16 27 H 0.01 0.68 7.97 -2.39 -0.02 0.66 16 28 H 0.09 2.75 7.99 -2.39 -0.02 2.73 16 29 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.12 1.84 6.02 -2.39 -0.01 1.83 16 32 H 0.13 1.47 8.00 -2.39 -0.02 1.45 16 33 H 0.11 1.68 7.65 -2.39 -0.02 1.66 16 34 H 0.09 2.68 7.58 -2.91 -0.02 2.66 16 35 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 36 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 0.86 7.91 -2.39 -0.02 0.84 16 40 H 0.08 2.78 7.06 -2.39 -0.02 2.76 16 41 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.08 3.31 6.67 -2.39 -0.02 3.29 16 Total: -1.00 -70.03 339.31 1.47 -68.56 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.97 Total: 10.28 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 4.85 Total: -2.15 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -6.33 Total: -102.11 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.04 Total: -20.67 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -70.03 1.47 -68.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.739 kcal (2) G-P(sol) polarization free energy of solvation -70.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds