Wall clock time and date at job start Tue Mar 31 2020 00:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00180 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99899 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.46798 * 179.97438 * 9 7 2 11 11 C 1.46902 * 110.99771 * 294.30378 * 10 9 7 12 12 C 1.53247 * 109.33821 * 172.74843 * 11 10 9 13 13 N 1.47079 * 108.52091 * 53.82860 * 12 11 10 14 14 C 1.34773 * 120.88239 * 128.79536 * 13 12 11 15 15 O 1.21281 * 120.00037 * 180.02562 * 14 13 12 16 16 C 1.50696 * 120.00022 * 0.02562 * 14 13 12 17 17 C 1.53002 * 109.47429 * 179.97438 * 16 14 13 18 18 H 1.08997 * 110.34464 * 307.29483 * 17 16 14 19 19 C 1.51108 * 110.38337 * 69.69654 * 17 16 14 20 20 C 1.30527 * 111.10228 * 135.25065 * 19 17 16 21 21 C 1.51103 * 111.10561 * 359.97438 * 20 19 17 22 22 C 1.54629 * 110.38647 * 184.99947 * 17 16 14 23 23 C 1.47082 * 118.23792 * 308.81222 * 13 12 11 24 24 C 1.46900 * 111.00040 * 170.00371 * 10 9 7 25 25 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 27 27 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 28 28 H 1.09003 * 109.49093 * 292.69918 * 11 10 9 29 29 H 1.08991 * 109.49770 * 52.78470 * 11 10 9 30 30 H 1.08994 * 109.62501 * 294.11829 * 12 11 10 31 31 H 1.08998 * 109.78581 * 173.63060 * 12 11 10 32 32 H 1.09005 * 109.47270 * 300.00189 * 16 14 13 33 33 H 1.08999 * 109.47150 * 60.00062 * 16 14 13 34 34 H 1.07995 * 124.44877 * 315.25181 * 19 17 16 35 35 H 1.07996 * 124.44807 * 180.02562 * 20 19 17 36 36 H 1.09001 * 110.39275 * 224.75464 * 21 20 19 37 37 H 1.09004 * 110.47969 * 102.42284 * 21 20 19 38 38 H 1.08996 * 111.04446 * 334.58667 * 22 17 16 39 39 H 1.09000 * 111.03824 * 98.53157 * 22 17 16 40 40 H 1.08996 * 109.63185 * 291.47923 * 23 13 12 41 41 H 1.08999 * 109.62845 * 170.89125 * 23 13 12 42 42 H 1.09005 * 109.48909 * 307.20822 * 24 10 9 43 43 H 1.09000 * 109.49644 * 67.29134 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.9768 -3.6490 -1.2494 12 6 4.0791 -4.7078 -1.1376 13 7 3.4617 -5.9862 -0.7535 14 6 3.7116 -7.1122 -1.4506 15 8 3.1935 -8.1578 -1.1200 16 6 4.6350 -7.0722 -2.6409 17 6 4.7467 -8.4725 -3.2471 18 1 5.0204 -9.1968 -2.4800 19 6 3.4449 -8.8663 -3.9057 20 6 3.6546 -9.4081 -5.0745 21 6 5.1311 -9.4655 -5.3907 22 6 5.7854 -8.4823 -4.3926 23 6 2.5639 -6.0032 0.4114 24 6 1.5212 -4.8935 0.2386 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 0.8902 27 1 0.6248 -2.5571 -0.8897 28 1 2.3149 -3.8993 -2.0785 29 1 3.4272 -2.6722 -1.4251 30 1 4.8003 -4.4065 -0.3779 31 1 4.5831 -4.8184 -2.0977 32 1 4.2370 -6.3837 -3.3865 33 1 5.6216 -6.7341 -2.3241 34 1 2.4692 -8.7188 -3.4669 35 1 2.8752 -9.7675 -5.7300 36 1 5.3128 -9.1433 -6.4160 37 1 5.5152 -10.4739 -5.2365 38 1 5.8915 -7.4910 -4.8331 39 1 6.7473 -8.8594 -4.0453 40 1 3.1395 -5.8265 1.3200 41 1 2.0632 -6.9694 0.4738 42 1 0.9161 -4.8191 1.1422 43 1 0.8796 -5.1264 -0.6112 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602210305.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:38 Heat of formation + Delta-G solvation = -15.617716 kcal Electronic energy + Delta-G solvation = -21834.812728 eV Core-core repulsion = 18686.924334 eV Total energy + Delta-G solvation = -3147.888393 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.22350 -38.66249 -37.31893 -34.38571 -32.53829 -31.85566 -30.55025 -29.06507 -28.28310 -26.10648 -24.88330 -23.22110 -22.01743 -20.85439 -20.39590 -18.94553 -18.40545 -17.01433 -16.41487 -16.10862 -15.79980 -15.23314 -15.00449 -14.73154 -14.43451 -13.94227 -13.66298 -13.52169 -13.26319 -12.50818 -12.40877 -12.07139 -12.00421 -11.95696 -11.87533 -11.41053 -11.33739 -11.23993 -11.05966 -10.97291 -10.88292 -10.75240 -10.62462 -10.55562 -9.90842 -9.55790 -9.31339 -8.99250 -8.51743 -8.42043 -7.34985 -6.08330 -4.10688 2.21650 2.76735 3.15787 3.29167 3.34092 3.36171 4.36383 4.38194 4.46783 4.67736 4.77515 4.79557 5.08602 5.19898 5.26261 5.28741 5.35613 5.38653 5.40776 5.49972 5.54027 5.62967 5.65109 5.70765 5.75082 5.80466 5.88057 6.02697 6.03851 6.13648 6.27446 6.43522 6.44723 6.48768 6.70189 6.82064 7.19859 7.25740 7.58457 7.71845 7.99322 8.09873 8.31627 8.45057 8.96147 9.53867 11.02451 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028171 B = 0.003443 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.692742 B = 8129.869096 C = 8543.669245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.511 4.511 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.536 5.536 11 C 0.050 3.950 12 C 0.109 3.891 13 N -0.610 5.610 14 C 0.513 3.487 15 O -0.550 6.550 16 C -0.132 4.132 17 C -0.053 4.053 18 H 0.089 0.911 19 C -0.138 4.138 20 C -0.185 4.185 21 C -0.098 4.098 22 C -0.123 4.123 23 C 0.118 3.882 24 C 0.041 3.959 25 H 0.263 0.737 26 H 0.032 0.968 27 H -0.009 1.009 28 H 0.024 0.976 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.560 -14.993 -7.907 19.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.550 4.550 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.079 4.079 12 C -0.014 4.014 13 N -0.343 5.343 14 C 0.301 3.699 15 O -0.428 6.428 16 C -0.172 4.172 17 C -0.072 4.072 18 H 0.107 0.893 19 C -0.156 4.156 20 C -0.203 4.203 21 C -0.135 4.135 22 C -0.160 4.160 23 C -0.005 4.005 24 C -0.088 4.088 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.009 0.991 28 H 0.042 0.958 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 10.454 -15.331 -7.339 19.955 hybrid contribution -0.380 1.006 -0.607 1.235 sum 10.074 -14.325 -7.946 19.231 Atomic orbital electron populations 1.69948 1.06111 1.27001 1.50628 1.25001 0.94865 0.99365 0.95331 0.86548 0.79434 0.82693 0.78657 1.20249 1.21358 1.20112 1.21097 0.93414 0.89876 1.50566 0.91847 1.19719 0.89998 0.87156 0.96217 1.62080 1.28098 1.02734 1.33164 1.22328 0.95157 0.99040 0.91418 1.22013 0.96236 0.82702 1.00481 1.48275 1.46983 1.08676 1.30360 1.20648 0.82086 0.83145 0.83985 1.90656 1.52439 1.30173 1.69581 1.21741 1.00017 0.99124 0.96305 1.20829 0.93492 0.95600 0.97260 0.89257 1.23311 0.98610 0.98355 0.95298 1.23226 0.97008 1.02165 0.97923 1.21319 0.93225 0.99546 0.99418 1.22566 0.97941 0.99961 0.95568 1.21732 0.91749 0.99388 0.87620 1.22405 0.94988 0.90574 1.00864 0.92784 0.95021 0.99146 0.95753 0.88466 0.90639 0.90163 0.88767 0.88811 0.85827 0.86156 0.91427 0.91015 0.90825 0.90885 0.91057 0.89491 0.90121 0.95615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.21 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.51 -13.81 8.42 -34.44 -0.29 -14.10 16 8 H 0.06 1.67 7.12 -52.48 -0.37 1.29 16 9 C 0.19 4.91 4.72 -4.98 -0.02 4.89 16 10 N -0.54 -11.05 4.62 -235.76 -1.09 -12.14 16 11 C 0.05 0.89 5.46 -3.70 -0.02 0.87 16 12 C 0.11 1.50 6.51 -3.60 -0.02 1.48 16 13 N -0.61 -9.06 3.01 -172.46 -0.52 -9.57 16 14 C 0.51 7.41 7.51 -10.99 -0.08 7.33 16 15 O -0.55 -9.51 14.37 5.56 0.08 -9.43 16 16 C -0.13 -1.41 3.46 -27.88 -0.10 -1.51 16 17 C -0.05 -0.57 2.52 -90.71 -0.23 -0.80 16 18 H 0.09 1.06 7.90 -51.93 -0.41 0.65 16 19 C -0.14 -1.62 9.26 -35.69 -0.33 -1.95 16 20 C -0.19 -1.86 10.78 -35.70 -0.38 -2.25 16 21 C -0.10 -0.82 6.81 -26.83 -0.18 -1.00 16 22 C -0.12 -1.01 6.71 -25.02 -0.17 -1.18 16 23 C 0.12 1.84 6.60 -3.60 -0.02 1.82 16 24 C 0.04 0.74 5.62 -3.70 -0.02 0.72 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 27 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.10 1.84 6.66 -51.93 -0.35 1.49 16 30 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.08 0.86 6.02 -51.93 -0.31 0.55 16 32 H 0.09 0.95 7.65 -51.93 -0.40 0.55 16 33 H 0.09 0.82 8.00 -51.93 -0.42 0.40 16 34 H 0.12 1.66 7.58 -52.49 -0.40 1.26 16 35 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.56 7.91 -51.93 -0.41 0.15 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.09 1.36 7.06 -51.93 -0.37 0.99 16 42 H 0.08 1.41 7.99 -51.93 -0.41 1.00 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 339.30 15.07 5.11 5.11 Total: -1.00 -30.74 339.30 -9.87 -40.61 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -7.20 Total: -0.85 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -1.97 Total: -4.24 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.87 Total: -47.19 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.08 Total: -9.43 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.74 -9.87 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210305.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.988 kcal (2) G-P(sol) polarization free energy of solvation -30.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds