Wall clock time and date at job start Tue Mar 31 2020 00:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.47093 * 240.00180 * 3 2 1 5 5 H 1.48495 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47239 * 119.99899 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.46798 * 179.97438 * 9 7 2 11 11 C 1.46902 * 110.99771 * 294.30378 * 10 9 7 12 12 C 1.53247 * 109.33821 * 172.74843 * 11 10 9 13 13 N 1.47079 * 108.52091 * 53.82860 * 12 11 10 14 14 C 1.34773 * 120.88239 * 128.79536 * 13 12 11 15 15 O 1.21281 * 120.00037 * 180.02562 * 14 13 12 16 16 C 1.50696 * 120.00022 * 0.02562 * 14 13 12 17 17 C 1.53002 * 109.47429 * 179.97438 * 16 14 13 18 18 H 1.08997 * 110.34464 * 307.29483 * 17 16 14 19 19 C 1.51108 * 110.38337 * 69.69654 * 17 16 14 20 20 C 1.30527 * 111.10228 * 135.25065 * 19 17 16 21 21 C 1.51103 * 111.10561 * 359.97438 * 20 19 17 22 22 C 1.54629 * 110.38647 * 184.99947 * 17 16 14 23 23 C 1.47082 * 118.23792 * 308.81222 * 13 12 11 24 24 C 1.46900 * 111.00040 * 170.00371 * 10 9 7 25 25 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 27 27 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 28 28 H 1.09003 * 109.49093 * 292.69918 * 11 10 9 29 29 H 1.08991 * 109.49770 * 52.78470 * 11 10 9 30 30 H 1.08994 * 109.62501 * 294.11829 * 12 11 10 31 31 H 1.08998 * 109.78581 * 173.63060 * 12 11 10 32 32 H 1.09005 * 109.47270 * 300.00189 * 16 14 13 33 33 H 1.08999 * 109.47150 * 60.00062 * 16 14 13 34 34 H 1.07995 * 124.44877 * 315.25181 * 19 17 16 35 35 H 1.07996 * 124.44807 * 180.02562 * 20 19 17 36 36 H 1.09001 * 110.39275 * 224.75464 * 21 20 19 37 37 H 1.09004 * 110.47969 * 102.42284 * 21 20 19 38 38 H 1.08996 * 111.04446 * 334.58667 * 22 17 16 39 39 H 1.09000 * 111.03824 * 98.53157 * 22 17 16 40 40 H 1.08996 * 109.63185 * 291.47923 * 23 13 12 41 41 H 1.08999 * 109.62845 * 170.89125 * 23 13 12 42 42 H 1.09005 * 109.48909 * 307.20822 * 24 10 9 43 43 H 1.09000 * 109.49644 * 67.29134 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.9768 -3.6490 -1.2494 12 6 4.0791 -4.7078 -1.1376 13 7 3.4617 -5.9862 -0.7535 14 6 3.7116 -7.1122 -1.4506 15 8 3.1935 -8.1578 -1.1200 16 6 4.6350 -7.0722 -2.6409 17 6 4.7467 -8.4725 -3.2471 18 1 5.0204 -9.1968 -2.4800 19 6 3.4449 -8.8663 -3.9057 20 6 3.6546 -9.4081 -5.0745 21 6 5.1311 -9.4655 -5.3907 22 6 5.7854 -8.4823 -4.3926 23 6 2.5639 -6.0032 0.4114 24 6 1.5212 -4.8935 0.2386 25 1 -0.4850 0.8401 0.0004 26 1 0.6241 -2.5567 0.8902 27 1 0.6248 -2.5571 -0.8897 28 1 2.3149 -3.8993 -2.0785 29 1 3.4272 -2.6722 -1.4251 30 1 4.8003 -4.4065 -0.3779 31 1 4.5831 -4.8184 -2.0977 32 1 4.2370 -6.3837 -3.3865 33 1 5.6216 -6.7341 -2.3241 34 1 2.4692 -8.7188 -3.4669 35 1 2.8752 -9.7675 -5.7300 36 1 5.3128 -9.1433 -6.4160 37 1 5.5152 -10.4739 -5.2365 38 1 5.8915 -7.4910 -4.8331 39 1 6.7473 -8.8594 -4.0453 40 1 3.1395 -5.8265 1.3200 41 1 2.0632 -6.9694 0.4738 42 1 0.9161 -4.8191 1.1422 43 1 0.8796 -5.1264 -0.6112 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602210305.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:37 Heat of formation + Delta-G solvation = -34.510188 kcal Electronic energy + Delta-G solvation = -21835.631967 eV Core-core repulsion = 18686.924334 eV Total energy + Delta-G solvation = -3148.707632 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.35635 -39.65904 -38.62389 -35.94591 -34.42546 -32.96360 -31.75212 -30.00697 -29.75652 -27.56004 -26.10352 -24.60283 -23.74738 -22.10166 -21.29720 -20.01497 -19.42219 -18.49181 -18.14436 -17.11455 -16.81938 -16.60782 -16.33082 -16.01882 -15.88506 -15.39126 -15.30379 -14.63193 -14.51919 -14.08817 -13.70050 -13.42663 -13.09163 -12.91768 -12.80011 -12.73712 -12.66596 -12.55537 -12.37315 -12.33043 -12.13182 -12.03809 -11.92862 -11.76481 -11.67569 -11.30420 -10.72824 -10.61126 -9.78535 -9.73963 -9.07494 -8.20179 -6.31054 1.38973 1.44047 1.47269 1.54979 1.64683 2.00959 2.41499 3.12169 3.21947 3.47930 3.74257 3.83602 3.99245 4.01766 4.06066 4.22867 4.29501 4.35889 4.43078 4.44143 4.57492 4.62358 4.68763 4.73062 4.76585 4.84683 4.93295 4.99544 5.01351 5.03515 5.12132 5.18784 5.22305 5.31212 5.45289 5.46980 5.63452 5.69767 5.99024 6.01580 6.22860 6.46844 6.55050 6.84785 7.17698 7.39183 8.91132 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028171 B = 0.003443 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.692742 B = 8129.869096 C = 8543.669245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.000 4.000 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.072 0.928 9 C 0.208 3.792 10 N -0.538 5.538 11 C 0.048 3.952 12 C 0.120 3.880 13 N -0.615 5.615 14 C 0.509 3.491 15 O -0.583 6.583 16 C -0.126 4.126 17 C -0.052 4.052 18 H 0.072 0.928 19 C -0.171 4.171 20 C -0.174 4.174 21 C -0.099 4.099 22 C -0.115 4.115 23 C 0.127 3.873 24 C 0.044 3.956 25 H 0.264 0.736 26 H 0.003 0.997 27 H -0.043 1.043 28 H 0.012 0.988 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.106 0.894 33 H 0.124 0.876 34 H 0.095 0.905 35 H 0.127 0.873 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.778 -14.892 -9.145 22.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.187 1.187 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.560 4.560 8 H 0.090 0.910 9 C 0.082 3.918 10 N -0.263 5.263 11 C -0.081 4.081 12 C -0.002 4.002 13 N -0.348 5.348 14 C 0.300 3.700 15 O -0.464 6.464 16 C -0.165 4.165 17 C -0.071 4.071 18 H 0.091 0.909 19 C -0.189 4.189 20 C -0.192 4.192 21 C -0.136 4.136 22 C -0.153 4.153 23 C 0.004 3.996 24 C -0.085 4.085 25 H 0.073 0.927 26 H 0.021 0.979 27 H -0.025 1.025 28 H 0.031 0.969 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.138 0.862 32 H 0.124 0.876 33 H 0.142 0.858 34 H 0.113 0.887 35 H 0.145 0.855 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 13.701 -15.250 -8.588 22.227 hybrid contribution -1.471 0.877 -0.246 1.730 sum 12.230 -14.373 -8.834 20.837 Atomic orbital electron populations 1.70097 1.07981 1.28016 1.51736 1.25972 0.95690 1.03429 0.94736 0.85390 0.78063 0.77563 0.79336 1.18729 1.21370 1.19197 1.21433 0.93889 0.90588 1.50132 0.91026 1.19371 0.90111 0.89040 0.93259 1.62022 1.26960 1.02412 1.34915 1.22402 0.95735 1.00327 0.89623 1.22032 0.94511 0.80626 1.03075 1.48386 1.46887 1.09391 1.30122 1.21383 0.81955 0.82270 0.84406 1.90646 1.53773 1.31424 1.70519 1.21820 1.00408 0.99701 0.94584 1.20814 0.93563 0.95017 0.97661 0.90937 1.23266 0.98227 1.00885 0.96492 1.23526 0.98626 0.99971 0.97063 1.21395 0.91567 1.00265 1.00407 1.22580 0.97694 1.00733 0.94245 1.21549 0.91436 0.97951 0.88703 1.22423 0.95670 0.90253 1.00178 0.92737 0.97907 1.02496 0.96926 0.89362 0.89502 0.86157 0.87604 0.85759 0.88654 0.85510 0.89821 0.90175 0.89547 0.89231 0.90100 0.89616 0.90311 0.97020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.08 13.29 21.45 0.28 -55.79 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 3 Si 0.97 42.83 29.54 68.60 2.03 44.86 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.52 -28.55 8.42 25.60 0.22 -28.33 16 8 H 0.07 3.72 7.12 -2.91 -0.02 3.70 16 9 C 0.21 10.99 4.72 85.55 0.40 11.39 16 10 N -0.54 -22.56 4.62 -899.80 -4.16 -26.72 16 11 C 0.05 1.69 5.46 86.39 0.47 2.16 16 12 C 0.12 3.00 6.51 86.35 0.56 3.56 16 13 N -0.61 -17.37 3.01 -817.94 -2.46 -19.84 16 14 C 0.51 14.05 7.51 87.66 0.66 14.71 16 15 O -0.58 -20.20 14.37 -3.03 -0.04 -20.25 16 16 C -0.13 -2.34 3.46 29.85 0.10 -2.24 16 17 C -0.05 -1.01 2.52 -10.86 -0.03 -1.03 16 18 H 0.07 1.64 7.90 -2.39 -0.02 1.62 16 19 C -0.17 -3.94 9.26 26.26 0.24 -3.70 16 20 C -0.17 -3.25 10.78 26.26 0.28 -2.97 16 21 C -0.10 -1.36 6.81 30.53 0.21 -1.16 16 22 C -0.12 -1.49 6.71 31.70 0.21 -1.28 16 23 C 0.13 3.93 6.60 86.35 0.57 4.50 16 24 C 0.04 1.62 5.62 86.38 0.49 2.11 16 25 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 26 H 0.00 0.16 7.97 -2.39 -0.02 0.14 16 27 H -0.04 -2.48 8.12 -2.39 -0.02 -2.50 16 28 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.09 3.27 6.66 -2.39 -0.02 3.25 16 30 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.12 2.08 6.02 -2.39 -0.01 2.07 16 32 H 0.11 1.78 7.65 -2.38 -0.02 1.76 16 33 H 0.12 1.59 8.00 -2.39 -0.02 1.57 16 34 H 0.10 2.70 7.58 -2.91 -0.02 2.67 16 35 H 0.13 2.11 8.06 -2.91 -0.02 2.08 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.09 0.93 7.91 -2.39 -0.02 0.91 16 39 H 0.09 0.89 8.14 -2.39 -0.02 0.88 16 40 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.09 2.71 7.06 -2.39 -0.02 2.69 16 42 H 0.08 2.89 7.99 -2.38 -0.02 2.87 16 43 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -68.77 339.30 1.47 -67.30 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.97 Total: 12.26 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 4.85 Total: -1.82 kcal Atomic # 7 Polarization: -96.02 SS G_CDS: -6.33 Total: -102.35 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.04 Total: -20.25 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -68.77 1.47 -67.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210305.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.792 kcal (2) G-P(sol) polarization free energy of solvation -68.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds