Wall clock time and date at job start Tue Mar 31 2020 00:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99601 * 2 1 4 4 H 1.48501 * 109.46615 * 239.99878 * 3 2 1 5 5 H 1.48503 * 109.47168 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47140 * 120.00126 * 3 2 1 7 7 C 1.37870 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99865 * 163.46593 * 7 2 1 9 9 C 1.50697 * 120.00382 * 343.46209 * 7 2 1 10 10 C 1.53005 * 115.54890 * 326.39860 * 9 7 2 11 11 N 1.46897 * 109.46953 * 269.89429 * 10 9 7 12 12 C 1.46901 * 111.00042 * 53.64530 * 11 10 9 13 13 C 1.50233 * 110.27799 * 73.30779 * 12 11 10 14 14 O 1.21279 * 118.63529 * 196.63106 * 13 12 11 15 15 N 1.33902 * 122.73485 * 16.64838 * 13 12 11 16 16 C 1.45725 * 122.44581 * 357.91078 * 15 13 12 17 17 H 1.09001 * 107.91142 * 261.60234 * 16 15 13 18 18 C 1.52549 * 110.49247 * 142.55226 * 16 15 13 19 19 C 1.52974 * 110.53504 * 294.51337 * 18 16 15 20 20 C 1.53080 * 109.12704 * 300.73606 * 19 18 16 21 21 C 1.52896 * 109.21368 * 60.99665 * 20 19 18 22 22 C 1.47555 * 111.00075 * 176.20522 * 11 10 9 23 23 H 1.09006 * 110.00070 * 66.31045 * 22 11 10 24 24 C 1.52995 * 117.52005 * 112.09657 * 9 7 2 25 25 C 1.53002 * 60.00379 * 107.48369 * 24 9 7 26 26 H 0.96993 * 120.00324 * 5.01290 * 1 2 3 27 27 H 1.08998 * 109.47056 * 149.90021 * 10 9 7 28 28 H 1.08989 * 109.47015 * 29.89520 * 10 9 7 29 29 H 1.09004 * 109.33440 * 193.57088 * 12 11 10 30 30 H 1.08998 * 109.33700 * 313.07431 * 12 11 10 31 31 H 0.96998 * 118.78127 * 177.92488 * 15 13 12 32 32 H 1.08996 * 108.84998 * 174.36062 * 18 16 15 33 33 H 1.08999 * 109.38585 * 55.00853 * 18 16 15 34 34 H 1.09006 * 109.52270 * 180.84335 * 19 18 16 35 35 H 1.08998 * 109.58563 * 60.67477 * 19 18 16 36 36 H 1.09000 * 109.51373 * 301.07648 * 20 19 18 37 37 H 1.08995 * 109.51197 * 180.91649 * 20 19 18 38 38 H 1.09004 * 109.41724 * 179.18770 * 21 20 19 39 39 H 1.08998 * 109.35915 * 59.36500 * 21 20 19 40 40 H 1.09007 * 117.50375 * 214.97450 * 24 9 7 41 41 H 1.09005 * 117.49795 * 359.97438 * 24 9 7 42 42 H 1.09001 * 117.50013 * 252.51434 * 25 24 9 43 43 H 1.08994 * 117.49547 * 107.49072 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0511 -1.2134 -0.2656 9 6 1.2979 -2.4719 0.3726 10 6 0.2016 -2.3357 1.4312 11 7 0.7848 -2.5211 2.7666 12 6 1.9229 -1.6157 2.9745 13 6 1.4385 -0.2073 3.1711 14 8 2.2319 0.7022 3.0512 15 7 0.1675 0.0858 3.4735 16 6 -0.8634 -0.9372 3.5936 17 1 -1.4175 -0.9665 2.6554 18 6 -1.8253 -0.5955 4.7272 19 6 -1.1033 -0.6393 6.0751 20 6 -0.5284 -2.0416 6.2909 21 6 0.4754 -2.3503 5.1796 22 6 -0.2265 -2.3072 3.8196 23 1 -0.9882 -3.0852 3.7686 24 6 1.0894 -3.5114 -0.7305 25 6 2.1219 -3.7612 0.3707 26 1 -0.4850 0.8367 -0.0734 27 1 -0.5640 -3.0926 1.2609 28 1 -0.2463 -1.3443 1.3648 29 1 2.4797 -1.9326 3.8563 30 1 2.5779 -1.6537 2.1041 31 1 -0.0763 1.0135 3.6178 32 1 -2.6391 -1.3206 4.7291 33 1 -2.2328 0.4027 4.5674 34 1 -1.8082 -0.4077 6.8737 35 1 -0.2942 0.0910 6.0802 36 1 -1.3355 -2.7738 6.2661 37 1 -0.0263 -2.0845 7.2573 38 1 0.8976 -3.3426 5.3381 39 1 1.2746 -1.6093 5.1986 40 1 0.1712 -4.0982 -0.7022 41 1 1.4630 -3.2708 -1.7259 42 1 3.1750 -3.6851 0.0999 43 1 1.8829 -4.5123 1.1235 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602785456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:19 Heat of formation + Delta-G solvation = 4.589144 kcal Electronic energy + Delta-G solvation = -24474.677815 eV Core-core repulsion = 21327.665657 eV Total energy + Delta-G solvation = -3147.012158 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.74494 -37.40781 -36.93519 -34.38354 -33.28775 -32.19211 -29.95244 -28.91905 -27.04040 -25.70136 -23.68941 -22.36492 -21.85994 -20.96921 -20.34160 -18.95286 -17.82921 -16.55185 -15.89565 -15.80674 -15.40540 -15.12582 -14.69678 -14.02887 -13.97881 -13.68680 -13.38234 -13.09583 -12.75722 -12.59662 -12.34799 -12.18828 -11.64770 -11.44009 -11.23221 -11.06420 -10.87956 -10.66443 -10.57718 -10.35384 -10.21652 -10.17910 -10.10691 -10.04665 -9.42520 -9.17777 -8.94189 -8.65478 -8.30696 -8.10976 -7.27604 -6.02747 -4.06335 3.35003 3.46369 3.60437 3.74820 3.91693 4.49366 4.51518 4.83926 4.88509 4.99672 5.10537 5.23411 5.31128 5.47766 5.52164 5.62472 5.65131 5.72700 5.80227 5.89026 6.02896 6.06284 6.14994 6.21675 6.27684 6.32969 6.41001 6.47760 6.51321 6.60981 6.71820 6.83353 6.90917 7.07329 7.13541 7.39855 7.43881 7.56979 7.78103 7.93560 8.07541 8.09935 8.45744 8.86697 9.05105 9.52578 10.91334 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018399 B = 0.009275 C = 0.007434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.458603 B = 3018.197254 C = 3765.804006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.083 3.917 3 Si 0.871 3.129 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.235 1.235 7 C -0.494 4.494 8 H 0.060 0.940 9 C 0.055 3.945 10 C 0.054 3.946 11 N -0.519 5.519 12 C 0.036 3.964 13 C 0.508 3.492 14 O -0.555 6.555 15 N -0.712 5.712 16 C 0.112 3.888 17 H 0.079 0.921 18 C -0.124 4.124 19 C -0.117 4.117 20 C -0.115 4.115 21 C -0.116 4.116 22 C 0.074 3.926 23 H 0.092 0.908 24 C -0.204 4.204 25 C -0.197 4.197 26 H 0.260 0.740 27 H 0.039 0.961 28 H 0.120 0.880 29 H 0.084 0.916 30 H 0.141 0.859 31 H 0.386 0.614 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.852 -3.839 11.273 12.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.120 4.120 3 Si 0.699 3.301 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.159 1.159 7 C -0.531 4.531 8 H 0.078 0.922 9 C 0.054 3.946 10 C -0.072 4.072 11 N -0.242 5.242 12 C -0.094 4.094 13 C 0.295 3.705 14 O -0.433 6.433 15 N -0.365 5.365 16 C 0.005 3.995 17 H 0.097 0.903 18 C -0.162 4.162 19 C -0.155 4.155 20 C -0.153 4.153 21 C -0.154 4.154 22 C -0.036 4.036 23 H 0.110 0.890 24 C -0.243 4.243 25 C -0.235 4.235 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.137 0.863 29 H 0.102 0.898 30 H 0.159 0.841 31 H 0.221 0.779 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.335 -3.972 11.248 12.692 hybrid contribution -0.230 1.967 -0.326 2.007 sum -4.565 -2.005 10.922 12.006 Atomic orbital electron populations 1.69743 1.06069 1.26708 1.48335 1.24823 0.94643 0.98979 0.93555 0.86989 0.80951 0.82555 0.79650 1.21453 1.22068 1.15904 1.20502 0.96136 0.89854 1.46565 0.92201 1.18898 0.94570 0.88040 0.93085 1.22410 0.95876 1.04386 0.84497 1.62931 1.07353 1.50441 1.03445 1.22599 0.96102 0.85448 1.05295 1.21200 0.81580 0.93479 0.74232 1.90714 1.53519 1.48177 1.50859 1.45473 1.09039 1.09557 1.72388 1.21383 0.89766 0.89672 0.98672 0.90349 1.21713 0.98008 1.01966 0.94556 1.21503 0.99855 0.97592 0.96553 1.21498 0.98812 0.96797 0.98223 1.21680 0.98251 1.02264 0.93221 1.22081 0.94985 0.94139 0.92347 0.89038 1.22983 0.98816 1.07398 0.95086 1.22767 0.95620 1.03319 1.01801 0.93007 0.94232 0.86320 0.89806 0.84123 0.77908 0.90845 0.91854 0.92303 0.91924 0.91959 0.92178 0.91074 0.91739 0.92012 0.90789 0.91224 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.09 10.75 55.43 0.60 -22.49 16 2 C 0.08 2.22 3.95 -17.82 -0.07 2.15 16 3 Si 0.87 22.30 27.86 -169.99 -4.74 17.57 16 4 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 5 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 6 H -0.24 -6.30 5.77 56.52 0.33 -5.97 16 7 C -0.49 -13.09 6.80 -34.44 -0.23 -13.32 16 8 H 0.06 1.64 7.87 -52.49 -0.41 1.23 16 9 C 0.05 1.30 1.08 -155.66 -0.17 1.13 16 10 C 0.05 1.18 4.25 -3.82 -0.02 1.17 16 11 N -0.52 -9.75 4.80 -227.92 -1.09 -10.85 16 12 C 0.04 0.73 4.73 -5.20 -0.02 0.71 16 13 C 0.51 10.80 5.12 -11.60 -0.06 10.74 16 14 O -0.56 -13.79 14.63 5.56 0.08 -13.70 16 15 N -0.71 -12.92 4.60 -55.02 -0.25 -13.17 16 16 C 0.11 1.74 2.37 -68.70 -0.16 1.58 16 17 H 0.08 1.42 6.43 -51.93 -0.33 1.08 16 18 C -0.12 -1.47 5.50 -26.98 -0.15 -1.61 16 19 C -0.12 -1.29 5.85 -26.70 -0.16 -1.45 16 20 C -0.12 -1.24 5.92 -26.74 -0.16 -1.40 16 21 C -0.12 -1.55 4.59 -26.73 -0.12 -1.67 16 22 C 0.07 1.13 2.63 -67.42 -0.18 0.96 16 23 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 24 C -0.20 -4.61 9.88 -26.73 -0.26 -4.87 16 25 C -0.20 -4.24 9.61 -26.73 -0.26 -4.50 16 26 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 27 H 0.04 0.85 7.88 -51.93 -0.41 0.44 16 28 H 0.12 2.78 2.46 -51.93 -0.13 2.65 16 29 H 0.08 1.52 6.63 -51.93 -0.34 1.18 16 30 H 0.14 3.30 4.92 -51.93 -0.26 3.04 16 31 H 0.39 6.81 8.74 -40.82 -0.36 6.46 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.78 7.90 -51.93 -0.41 0.37 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.97 5.40 -51.93 -0.28 0.69 16 40 H 0.06 1.31 8.03 -51.93 -0.42 0.89 16 41 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 42 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 310.92 15.07 4.69 4.69 Total: -1.00 -28.52 310.92 -9.53 -38.05 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -6.79 Total: 10.31 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -2.02 Total: -10.40 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: -0.75 Total: -46.51 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.08 Total: -13.70 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.74 Total: 17.57 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.52 -9.53 -38.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602785456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.638 kcal (2) G-P(sol) polarization free energy of solvation -28.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds