Wall clock time and date at job start Tue Mar 31 2020 00:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99601 * 2 1 4 4 H 1.48501 * 109.46615 * 239.99878 * 3 2 1 5 5 H 1.48503 * 109.47168 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47140 * 120.00126 * 3 2 1 7 7 C 1.37870 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99865 * 163.46593 * 7 2 1 9 9 C 1.50697 * 120.00382 * 343.46209 * 7 2 1 10 10 C 1.53005 * 115.54890 * 326.39860 * 9 7 2 11 11 N 1.46897 * 109.46953 * 269.89429 * 10 9 7 12 12 C 1.46901 * 111.00042 * 53.64530 * 11 10 9 13 13 C 1.50233 * 110.27799 * 73.30779 * 12 11 10 14 14 O 1.21279 * 118.63529 * 196.63106 * 13 12 11 15 15 N 1.33902 * 122.73485 * 16.64838 * 13 12 11 16 16 C 1.45725 * 122.44581 * 357.91078 * 15 13 12 17 17 H 1.09001 * 107.91142 * 261.60234 * 16 15 13 18 18 C 1.52549 * 110.49247 * 142.55226 * 16 15 13 19 19 C 1.52974 * 110.53504 * 294.51337 * 18 16 15 20 20 C 1.53080 * 109.12704 * 300.73606 * 19 18 16 21 21 C 1.52896 * 109.21368 * 60.99665 * 20 19 18 22 22 C 1.47555 * 111.00075 * 176.20522 * 11 10 9 23 23 H 1.09006 * 110.00070 * 66.31045 * 22 11 10 24 24 C 1.52995 * 117.52005 * 112.09657 * 9 7 2 25 25 C 1.53002 * 60.00379 * 107.48369 * 24 9 7 26 26 H 0.96993 * 120.00324 * 5.01290 * 1 2 3 27 27 H 1.08998 * 109.47056 * 149.90021 * 10 9 7 28 28 H 1.08989 * 109.47015 * 29.89520 * 10 9 7 29 29 H 1.09004 * 109.33440 * 193.57088 * 12 11 10 30 30 H 1.08998 * 109.33700 * 313.07431 * 12 11 10 31 31 H 0.96998 * 118.78127 * 177.92488 * 15 13 12 32 32 H 1.08996 * 108.84998 * 174.36062 * 18 16 15 33 33 H 1.08999 * 109.38585 * 55.00853 * 18 16 15 34 34 H 1.09006 * 109.52270 * 180.84335 * 19 18 16 35 35 H 1.08998 * 109.58563 * 60.67477 * 19 18 16 36 36 H 1.09000 * 109.51373 * 301.07648 * 20 19 18 37 37 H 1.08995 * 109.51197 * 180.91649 * 20 19 18 38 38 H 1.09004 * 109.41724 * 179.18770 * 21 20 19 39 39 H 1.08998 * 109.35915 * 59.36500 * 21 20 19 40 40 H 1.09007 * 117.50375 * 214.97450 * 24 9 7 41 41 H 1.09005 * 117.49795 * 359.97438 * 24 9 7 42 42 H 1.09001 * 117.50013 * 252.51434 * 25 24 9 43 43 H 1.08994 * 117.49547 * 107.49072 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0511 -1.2134 -0.2656 9 6 1.2979 -2.4719 0.3726 10 6 0.2016 -2.3357 1.4312 11 7 0.7848 -2.5211 2.7666 12 6 1.9229 -1.6157 2.9745 13 6 1.4385 -0.2073 3.1711 14 8 2.2319 0.7022 3.0512 15 7 0.1675 0.0858 3.4735 16 6 -0.8634 -0.9372 3.5936 17 1 -1.4175 -0.9665 2.6554 18 6 -1.8253 -0.5955 4.7272 19 6 -1.1033 -0.6393 6.0751 20 6 -0.5284 -2.0416 6.2909 21 6 0.4754 -2.3503 5.1796 22 6 -0.2265 -2.3072 3.8196 23 1 -0.9882 -3.0852 3.7686 24 6 1.0894 -3.5114 -0.7305 25 6 2.1219 -3.7612 0.3707 26 1 -0.4850 0.8367 -0.0734 27 1 -0.5640 -3.0926 1.2609 28 1 -0.2463 -1.3443 1.3648 29 1 2.4797 -1.9326 3.8563 30 1 2.5779 -1.6537 2.1041 31 1 -0.0763 1.0135 3.6178 32 1 -2.6391 -1.3206 4.7291 33 1 -2.2328 0.4027 4.5674 34 1 -1.8082 -0.4077 6.8737 35 1 -0.2942 0.0910 6.0802 36 1 -1.3355 -2.7738 6.2661 37 1 -0.0263 -2.0845 7.2573 38 1 0.8976 -3.3426 5.3381 39 1 1.2746 -1.6093 5.1986 40 1 0.1712 -4.0982 -0.7022 41 1 1.4630 -3.2708 -1.7259 42 1 3.1750 -3.6851 0.0999 43 1 1.8829 -4.5123 1.1235 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602785456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:18 Heat of formation + Delta-G solvation = -14.598084 kcal Electronic energy + Delta-G solvation = -24475.509835 eV Core-core repulsion = 21327.665657 eV Total energy + Delta-G solvation = -3147.844178 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.17369 -38.95987 -38.59267 -35.78869 -34.66866 -34.22422 -31.15654 -30.23603 -28.56252 -27.68575 -25.17678 -23.48125 -23.31830 -22.69126 -21.57278 -20.66963 -19.28228 -18.28049 -17.49579 -17.24921 -16.83274 -16.71045 -16.56105 -15.65822 -15.40904 -15.01946 -14.86031 -14.58242 -14.22756 -14.03851 -13.72033 -13.36821 -13.24423 -12.98571 -12.87285 -12.69862 -12.49832 -12.34852 -12.18514 -11.99310 -11.84185 -11.50353 -11.30812 -11.27598 -11.07520 -10.97516 -10.84249 -10.51960 -10.03200 -9.79163 -8.89724 -8.06666 -6.13093 1.29001 1.35227 1.63565 1.90368 2.40656 2.45674 2.97422 3.15702 3.71996 3.76983 3.86623 3.96563 4.00758 4.22750 4.28765 4.36185 4.47188 4.55658 4.64487 4.67907 4.73367 4.79729 4.85777 4.95418 4.99883 5.07654 5.13054 5.14223 5.23130 5.25033 5.31012 5.33897 5.37849 5.41625 5.54476 5.60223 5.67090 5.90813 6.08930 6.28792 6.37447 6.48295 6.54841 6.81589 7.43306 7.44490 8.82016 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018399 B = 0.009275 C = 0.007434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.458603 B = 3018.197254 C = 3765.804006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.067 3.933 3 Si 0.899 3.101 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.255 1.255 7 C -0.500 4.500 8 H 0.040 0.960 9 C 0.030 3.970 10 C 0.061 3.939 11 N -0.513 5.513 12 C 0.043 3.957 13 C 0.505 3.495 14 O -0.601 6.601 15 N -0.703 5.703 16 C 0.112 3.888 17 H 0.055 0.945 18 C -0.116 4.116 19 C -0.115 4.115 20 C -0.109 4.109 21 C -0.111 4.111 22 C 0.071 3.929 23 H 0.112 0.888 24 C -0.205 4.205 25 C -0.175 4.175 26 H 0.257 0.743 27 H 0.044 0.956 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.387 0.613 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.042 0.958 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.536 -5.394 13.199 15.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.135 4.135 3 Si 0.728 3.272 4 H -0.217 1.217 5 H -0.223 1.223 6 H -0.179 1.179 7 C -0.537 4.537 8 H 0.058 0.942 9 C 0.030 3.970 10 C -0.065 4.065 11 N -0.235 5.235 12 C -0.089 4.089 13 C 0.292 3.708 14 O -0.482 6.482 15 N -0.354 5.354 16 C 0.006 3.994 17 H 0.072 0.928 18 C -0.155 4.155 19 C -0.152 4.152 20 C -0.147 4.147 21 C -0.149 4.149 22 C -0.037 4.037 23 H 0.130 0.870 24 C -0.243 4.243 25 C -0.213 4.213 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.222 0.778 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.096 0.904 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.059 -5.543 13.179 15.529 hybrid contribution 0.299 2.430 -0.920 2.615 sum -5.760 -3.114 12.259 13.898 Atomic orbital electron populations 1.69804 1.05922 1.26449 1.49047 1.24966 0.94962 0.99476 0.94108 0.86579 0.80191 0.81998 0.78448 1.21656 1.22261 1.17934 1.20603 0.95408 0.91478 1.46237 0.94188 1.18962 0.96009 0.87571 0.94495 1.22184 0.95176 1.03585 0.85590 1.62919 1.07871 1.49633 1.03105 1.22424 0.96414 0.85384 1.04628 1.21415 0.82171 0.93439 0.73731 1.90685 1.55021 1.49319 1.53163 1.45495 1.08661 1.10413 1.70805 1.21529 0.89345 0.89245 0.99309 0.92757 1.21687 0.97511 1.02874 0.93384 1.21497 0.99695 0.97422 0.96605 1.21487 0.98704 0.96913 0.97588 1.21648 0.98273 1.02167 0.92814 1.22308 0.94756 0.94441 0.92228 0.86995 1.22977 0.99862 1.07010 0.94480 1.22723 0.95149 1.02092 1.01317 0.93283 0.93766 0.87847 0.87804 0.87358 0.77816 0.88473 0.91529 0.89876 0.93859 0.89949 0.90818 0.90137 0.93892 0.90436 0.91973 0.91533 0.88870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -46.61 10.75 21.45 0.23 -46.38 16 2 C 0.07 3.62 3.95 84.65 0.33 3.96 16 3 Si 0.90 46.86 27.86 68.60 1.91 48.77 16 4 H -0.29 -14.99 7.11 99.48 0.71 -14.28 16 5 H -0.30 -15.37 7.11 99.48 0.71 -14.67 16 6 H -0.25 -14.08 5.77 99.48 0.57 -13.51 16 7 C -0.50 -26.94 6.80 25.60 0.17 -26.77 16 8 H 0.04 2.26 7.87 -2.91 -0.02 2.24 16 9 C 0.03 1.42 1.08 -52.93 -0.06 1.36 16 10 C 0.06 2.61 4.25 86.31 0.37 2.98 16 11 N -0.51 -18.47 4.80 -875.02 -4.20 -22.68 16 12 C 0.04 1.72 4.73 85.41 0.40 2.12 16 13 C 0.50 21.65 5.12 87.65 0.45 22.10 16 14 O -0.60 -30.68 14.63 -3.03 -0.04 -30.72 16 15 N -0.70 -25.30 4.60 -446.87 -2.06 -27.35 16 16 C 0.11 3.28 2.37 44.91 0.11 3.38 16 17 H 0.05 1.90 6.43 -2.39 -0.02 1.88 16 18 C -0.12 -2.38 5.50 30.44 0.17 -2.22 16 19 C -0.11 -2.12 5.85 30.61 0.18 -1.94 16 20 C -0.11 -1.89 5.92 30.59 0.18 -1.71 16 21 C -0.11 -2.63 4.59 30.59 0.14 -2.49 16 22 C 0.07 2.00 2.63 44.75 0.12 2.12 16 23 H 0.11 2.75 8.14 -2.38 -0.02 2.73 16 24 C -0.20 -9.01 9.88 30.59 0.30 -8.71 16 25 C -0.18 -7.30 9.61 30.60 0.29 -7.00 16 26 H 0.26 13.58 8.32 -92.71 -0.77 12.81 16 27 H 0.04 1.82 7.88 -2.39 -0.02 1.80 16 28 H 0.10 4.80 2.46 -2.39 -0.01 4.79 16 29 H 0.10 3.71 6.63 -2.39 -0.02 3.69 16 30 H 0.11 5.17 4.92 -2.39 -0.01 5.15 16 31 H 0.39 13.69 8.74 -92.71 -0.81 12.88 16 32 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.04 0.98 7.90 -2.39 -0.02 0.96 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.04 1.21 5.40 -2.39 -0.01 1.20 16 40 H 0.08 3.14 8.03 -2.38 -0.02 3.12 16 41 H 0.06 2.85 8.14 -2.38 -0.02 2.83 16 42 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 43 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 Total: -1.00 -62.25 310.92 -0.93 -63.18 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: 0.07 Total: 27.99 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 3.16 Total: -12.81 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -6.03 Total: -96.41 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.04 Total: -30.72 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.91 Total: 48.77 kcal Total: -62.25 -0.93 -63.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602785456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.586 kcal (2) G-P(sol) polarization free energy of solvation -62.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds