Wall clock time and date at job start Tue Mar 31 2020 00:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00145 * 2 1 4 4 H 1.48494 * 109.47166 * 264.85646 * 3 2 1 5 5 H 1.48498 * 109.47358 * 24.85491 * 3 2 1 6 6 H 1.48506 * 109.47504 * 144.85388 * 3 2 1 7 7 C 1.37880 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00244 * 343.06708 * 7 2 1 9 9 C 1.50701 * 119.99834 * 163.05015 * 7 2 1 10 10 C 1.52997 * 115.55629 * 294.42705 * 9 7 2 11 11 N 1.46899 * 109.47178 * 268.70057 * 10 9 7 12 12 C 1.47028 * 110.99995 * 53.13761 * 11 10 9 13 13 C 1.50151 * 110.65288 * 171.04164 * 12 11 10 14 14 O 1.21284 * 118.40412 * 164.48166 * 13 12 11 15 15 N 1.34008 * 123.19057 * 344.46084 * 13 12 11 16 16 C 1.45643 * 121.94822 * 3.16355 * 15 13 12 17 17 H 1.09006 * 108.42269 * 97.00511 * 16 15 13 18 18 C 1.52700 * 111.59589 * 216.99348 * 16 15 13 19 19 C 1.53217 * 108.86648 * 182.51819 * 18 16 15 20 20 C 1.52890 * 109.97414 * 300.66965 * 19 18 16 21 21 C 1.53203 * 109.98795 * 58.84438 * 20 19 18 22 22 C 1.46724 * 110.99985 * 175.69019 * 11 10 9 23 23 H 1.09004 * 109.14563 * 287.13520 * 22 11 10 24 24 C 1.53002 * 117.51536 * 80.13071 * 9 7 2 25 25 C 1.52998 * 59.99964 * 107.47483 * 24 9 7 26 26 H 0.97000 * 119.99682 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47323 * 148.69839 * 10 9 7 28 28 H 1.09000 * 109.46545 * 28.70094 * 10 9 7 29 29 H 1.08999 * 109.24159 * 291.34653 * 12 11 10 30 30 H 1.09003 * 109.24456 * 50.73675 * 12 11 10 31 31 H 0.97003 * 119.02246 * 183.16327 * 15 13 12 32 32 H 1.08996 * 109.57646 * 302.32819 * 18 16 15 33 33 H 1.09001 * 109.57548 * 62.70300 * 18 16 15 34 34 H 1.08993 * 109.38681 * 60.81960 * 19 18 16 35 35 H 1.08997 * 109.38870 * 180.51759 * 19 18 16 36 36 H 1.09002 * 109.37953 * 179.00003 * 20 19 18 37 37 H 1.08997 * 109.38776 * 298.78850 * 20 19 18 38 38 H 1.08997 * 109.57454 * 60.42740 * 21 20 19 39 39 H 1.09005 * 109.57006 * 180.67590 * 21 20 19 40 40 H 1.08996 * 117.50154 * 214.96973 * 24 9 7 41 41 H 1.09009 * 117.49358 * 359.97438 * 24 9 7 42 42 H 1.08998 * 117.50171 * 252.50917 * 25 24 9 43 43 H 1.09002 * 117.51305 * 107.48036 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6054 1.9836 -1.3944 5 1 1.3966 2.6816 0.5885 6 1 3.4882 1.4740 0.8060 7 6 2.0046 -1.1941 0.0005 8 1 1.4997 -2.1090 0.2733 9 6 3.4625 -1.2225 -0.3799 10 6 3.7729 -0.8542 -1.8321 11 7 3.7821 -2.0711 -2.6548 12 6 2.5371 -2.8337 -2.4815 13 6 2.4581 -3.9527 -3.4796 14 8 1.6498 -4.8372 -3.2919 15 7 3.2370 -4.0213 -4.5679 16 6 4.2783 -3.0382 -4.8336 17 1 5.2291 -3.4405 -4.4839 18 6 4.3900 -2.7269 -6.3243 19 6 5.5406 -1.7382 -6.5391 20 6 5.2787 -0.4533 -5.7529 21 6 5.1369 -0.7719 -4.2611 22 6 3.9758 -1.7461 -4.0724 23 1 3.0619 -1.3003 -4.4650 24 6 4.4794 -0.8104 0.6863 25 6 4.3454 -2.2806 0.2847 26 1 -0.4850 0.8401 -0.0004 27 1 4.7496 -0.3731 -1.8841 28 1 3.0105 -0.1698 -2.2042 29 1 2.5070 -3.2483 -1.4739 30 1 1.6855 -2.1676 -2.6205 31 1 3.1034 -4.7472 -5.1972 32 1 4.5907 -3.6457 -6.8753 33 1 3.4580 -2.2844 -6.6759 34 1 6.4727 -2.1879 -6.1971 35 1 5.6221 -1.5028 -7.6002 36 1 6.1109 0.2356 -5.8982 37 1 4.3592 0.0092 -6.1115 38 1 6.0578 -1.2261 -3.8955 39 1 4.9386 0.1467 -3.7088 40 1 5.3696 -0.2768 0.3533 41 1 4.0939 -0.5181 1.6632 42 1 3.8718 -2.9559 0.9974 43 1 5.1472 -2.7145 -0.3127 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602786174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:23 Heat of formation + Delta-G solvation = -12.451162 kcal Electronic energy + Delta-G solvation = -23426.230578 eV Core-core repulsion = 20278.479497 eV Total energy + Delta-G solvation = -3147.751081 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.55773 -38.11660 -37.35170 -34.76356 -34.09236 -32.16956 -30.08703 -29.06995 -27.64067 -25.88112 -23.84002 -22.74331 -21.92652 -21.32981 -20.15447 -19.07616 -18.68116 -16.88040 -16.67346 -16.20982 -15.26860 -14.98290 -14.66499 -14.49619 -14.20889 -13.93619 -13.66829 -13.60645 -13.16311 -12.88752 -12.62138 -12.22854 -11.99227 -11.94742 -11.63137 -11.40773 -11.27833 -11.00646 -10.81128 -10.73669 -10.54559 -10.41913 -10.21710 -10.09588 -9.48688 -9.41147 -9.04298 -8.83796 -8.70026 -8.32445 -7.84826 -6.17097 -4.13123 3.03148 3.23114 3.35552 3.43304 3.49897 4.06899 4.39460 4.53201 4.67086 4.77493 4.92605 4.99966 5.05662 5.23203 5.25402 5.32726 5.36104 5.36149 5.62152 5.65932 5.77415 5.91110 5.95036 5.98031 6.02492 6.10316 6.11880 6.18486 6.20313 6.29268 6.40593 6.45501 6.59192 6.64041 6.84085 7.03100 7.08686 7.21991 7.39864 7.54801 7.60860 7.76274 8.47606 8.56454 8.90637 9.49067 10.94092 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017457 B = 0.007020 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.561916 B = 3987.866935 C = 4601.531702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.082 3.918 3 Si 0.862 3.138 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.251 1.251 7 C -0.493 4.493 8 H 0.078 0.922 9 C -0.004 4.004 10 C 0.087 3.913 11 N -0.517 5.517 12 C 0.052 3.948 13 C 0.523 3.477 14 O -0.558 6.558 15 N -0.722 5.722 16 C 0.151 3.849 17 H 0.076 0.924 18 C -0.128 4.128 19 C -0.113 4.113 20 C -0.121 4.121 21 C -0.113 4.113 22 C 0.066 3.934 23 H 0.046 0.954 24 C -0.194 4.194 25 C -0.168 4.168 26 H 0.264 0.736 27 H 0.060 0.940 28 H 0.039 0.961 29 H 0.129 0.871 30 H 0.084 0.916 31 H 0.392 0.608 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.483 -0.951 -12.629 17.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.122 4.122 3 Si 0.689 3.311 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.175 1.175 7 C -0.529 4.529 8 H 0.096 0.904 9 C -0.005 4.005 10 C -0.040 4.040 11 N -0.243 5.243 12 C -0.078 4.078 13 C 0.312 3.688 14 O -0.435 6.435 15 N -0.375 5.375 16 C 0.046 3.954 17 H 0.094 0.906 18 C -0.166 4.166 19 C -0.151 4.151 20 C -0.159 4.159 21 C -0.151 4.151 22 C -0.044 4.044 23 H 0.064 0.936 24 C -0.233 4.233 25 C -0.205 4.205 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.146 0.854 30 H 0.102 0.898 31 H 0.228 0.772 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.279 -1.431 -12.180 17.354 hybrid contribution -0.352 1.308 -0.503 1.444 sum 11.927 -0.123 -12.683 17.410 Atomic orbital electron populations 1.69994 1.06504 1.27202 1.48538 1.24928 0.94314 0.98992 0.93944 0.87085 0.81391 0.83730 0.78877 1.20496 1.21987 1.17458 1.20324 0.90348 0.95431 1.46841 0.90441 1.19395 0.92829 0.99998 0.88305 1.22065 0.98997 0.89416 0.93550 1.62604 1.34719 1.22260 1.04668 1.22273 0.92595 0.93269 0.99652 1.20807 0.79057 0.87392 0.81590 1.90720 1.37638 1.39384 1.75807 1.45721 1.36738 1.29788 1.25225 1.20883 0.91254 0.88741 0.94551 0.90633 1.21846 0.99853 0.99861 0.95077 1.21475 0.98088 0.95476 1.00108 1.21580 1.01969 0.97310 0.95011 1.21611 0.98291 0.99089 0.96077 1.21868 0.98406 0.94114 0.89981 0.93597 1.23083 1.01101 0.97658 1.01415 1.22656 1.02828 0.91393 1.03673 0.92588 0.92158 0.94235 0.85362 0.89819 0.77217 0.91261 0.91283 0.91573 0.91652 0.91545 0.91923 0.90706 0.90887 0.91560 0.89813 0.90261 0.90312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.96 55.43 0.77 -25.25 16 2 C 0.08 2.23 5.30 -17.82 -0.09 2.14 16 3 Si 0.86 20.42 25.77 -169.99 -4.38 16.04 16 4 H -0.28 -6.41 7.04 56.52 0.40 -6.01 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.25 -5.65 5.77 56.52 0.33 -5.32 16 7 C -0.49 -12.93 7.67 -34.44 -0.26 -13.19 16 8 H 0.08 2.26 7.96 -52.49 -0.42 1.85 16 9 C 0.00 -0.09 0.12 -155.66 -0.02 -0.11 16 10 C 0.09 1.69 3.57 -3.83 -0.01 1.67 16 11 N -0.52 -9.03 4.53 -228.62 -1.04 -10.06 16 12 C 0.05 1.03 4.32 -5.17 -0.02 1.01 16 13 C 0.52 9.83 7.79 -11.59 -0.09 9.74 16 14 O -0.56 -12.43 17.82 5.55 0.10 -12.33 16 15 N -0.72 -10.37 5.30 -54.89 -0.29 -10.66 16 16 C 0.15 1.84 2.94 -68.55 -0.20 1.64 16 17 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 18 C -0.13 -1.17 5.61 -26.77 -0.15 -1.32 16 19 C -0.11 -0.91 5.91 -26.68 -0.16 -1.07 16 20 C -0.12 -1.12 5.90 -26.68 -0.16 -1.28 16 21 C -0.11 -1.33 4.69 -26.76 -0.13 -1.46 16 22 C 0.07 0.94 1.71 -67.95 -0.12 0.82 16 23 H 0.05 0.72 8.05 -51.93 -0.42 0.30 16 24 C -0.19 -3.95 7.70 -26.73 -0.21 -4.16 16 25 C -0.17 -3.33 9.26 -26.73 -0.25 -3.58 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.06 1.07 6.34 -51.93 -0.33 0.74 16 28 H 0.04 0.85 6.63 -51.93 -0.34 0.51 16 29 H 0.13 2.84 6.30 -51.93 -0.33 2.52 16 30 H 0.08 1.87 7.97 -51.93 -0.41 1.46 16 31 H 0.39 4.92 8.78 -40.82 -0.36 4.56 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.95 6.54 -51.93 -0.34 0.61 16 40 H 0.07 1.22 8.03 -51.93 -0.42 0.81 16 41 H 0.08 1.79 7.97 -51.92 -0.41 1.37 16 42 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 43 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 LS Contribution 324.09 15.07 4.88 4.88 Total: -1.00 -29.90 324.09 -9.04 -38.93 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -7.22 Total: 7.60 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -1.87 Total: -9.14 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.55 Total: -45.98 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.10 Total: -12.33 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.38 Total: 16.04 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.90 -9.04 -38.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602786174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.482 kcal (2) G-P(sol) polarization free energy of solvation -29.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds