Wall clock time and date at job start Tue Mar 31 2020 00:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00145 * 2 1 4 4 H 1.48494 * 109.47166 * 264.85646 * 3 2 1 5 5 H 1.48498 * 109.47358 * 24.85491 * 3 2 1 6 6 H 1.48506 * 109.47504 * 144.85388 * 3 2 1 7 7 C 1.37880 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00244 * 343.06708 * 7 2 1 9 9 C 1.50701 * 119.99834 * 163.05015 * 7 2 1 10 10 C 1.52997 * 115.55629 * 294.42705 * 9 7 2 11 11 N 1.46899 * 109.47178 * 268.70057 * 10 9 7 12 12 C 1.47028 * 110.99995 * 53.13761 * 11 10 9 13 13 C 1.50151 * 110.65288 * 171.04164 * 12 11 10 14 14 O 1.21284 * 118.40412 * 164.48166 * 13 12 11 15 15 N 1.34008 * 123.19057 * 344.46084 * 13 12 11 16 16 C 1.45643 * 121.94822 * 3.16355 * 15 13 12 17 17 H 1.09006 * 108.42269 * 97.00511 * 16 15 13 18 18 C 1.52700 * 111.59589 * 216.99348 * 16 15 13 19 19 C 1.53217 * 108.86648 * 182.51819 * 18 16 15 20 20 C 1.52890 * 109.97414 * 300.66965 * 19 18 16 21 21 C 1.53203 * 109.98795 * 58.84438 * 20 19 18 22 22 C 1.46724 * 110.99985 * 175.69019 * 11 10 9 23 23 H 1.09004 * 109.14563 * 287.13520 * 22 11 10 24 24 C 1.53002 * 117.51536 * 80.13071 * 9 7 2 25 25 C 1.52998 * 59.99964 * 107.47483 * 24 9 7 26 26 H 0.97000 * 119.99682 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47323 * 148.69839 * 10 9 7 28 28 H 1.09000 * 109.46545 * 28.70094 * 10 9 7 29 29 H 1.08999 * 109.24159 * 291.34653 * 12 11 10 30 30 H 1.09003 * 109.24456 * 50.73675 * 12 11 10 31 31 H 0.97003 * 119.02246 * 183.16327 * 15 13 12 32 32 H 1.08996 * 109.57646 * 302.32819 * 18 16 15 33 33 H 1.09001 * 109.57548 * 62.70300 * 18 16 15 34 34 H 1.08993 * 109.38681 * 60.81960 * 19 18 16 35 35 H 1.08997 * 109.38870 * 180.51759 * 19 18 16 36 36 H 1.09002 * 109.37953 * 179.00003 * 20 19 18 37 37 H 1.08997 * 109.38776 * 298.78850 * 20 19 18 38 38 H 1.08997 * 109.57454 * 60.42740 * 21 20 19 39 39 H 1.09005 * 109.57006 * 180.67590 * 21 20 19 40 40 H 1.08996 * 117.50154 * 214.96973 * 24 9 7 41 41 H 1.09009 * 117.49358 * 359.97438 * 24 9 7 42 42 H 1.08998 * 117.50171 * 252.50917 * 25 24 9 43 43 H 1.09002 * 117.51305 * 107.48036 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6054 1.9836 -1.3944 5 1 1.3966 2.6816 0.5885 6 1 3.4882 1.4740 0.8060 7 6 2.0046 -1.1941 0.0005 8 1 1.4997 -2.1090 0.2733 9 6 3.4625 -1.2225 -0.3799 10 6 3.7729 -0.8542 -1.8321 11 7 3.7821 -2.0711 -2.6548 12 6 2.5371 -2.8337 -2.4815 13 6 2.4581 -3.9527 -3.4796 14 8 1.6498 -4.8372 -3.2919 15 7 3.2370 -4.0213 -4.5679 16 6 4.2783 -3.0382 -4.8336 17 1 5.2291 -3.4405 -4.4839 18 6 4.3900 -2.7269 -6.3243 19 6 5.5406 -1.7382 -6.5391 20 6 5.2787 -0.4533 -5.7529 21 6 5.1369 -0.7719 -4.2611 22 6 3.9758 -1.7461 -4.0724 23 1 3.0619 -1.3003 -4.4650 24 6 4.4794 -0.8104 0.6863 25 6 4.3454 -2.2806 0.2847 26 1 -0.4850 0.8401 -0.0004 27 1 4.7496 -0.3731 -1.8841 28 1 3.0105 -0.1698 -2.2042 29 1 2.5070 -3.2483 -1.4739 30 1 1.6855 -2.1676 -2.6205 31 1 3.1034 -4.7472 -5.1972 32 1 4.5907 -3.6457 -6.8753 33 1 3.4580 -2.2844 -6.6759 34 1 6.4727 -2.1879 -6.1971 35 1 5.6221 -1.5028 -7.6002 36 1 6.1109 0.2356 -5.8982 37 1 4.3592 0.0092 -6.1115 38 1 6.0578 -1.2261 -3.8955 39 1 4.9386 0.1467 -3.7088 40 1 5.3696 -0.2768 0.3533 41 1 4.0939 -0.5181 1.6632 42 1 3.8718 -2.9559 0.9974 43 1 5.1472 -2.7145 -0.3127 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602786174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:23 Heat of formation + Delta-G solvation = -34.435158 kcal Electronic energy + Delta-G solvation = -23427.183876 eV Core-core repulsion = 20278.479497 eV Total energy + Delta-G solvation = -3148.704379 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.87728 -39.55572 -38.81395 -36.08810 -35.37082 -34.26227 -31.07028 -30.20027 -29.19865 -27.81823 -25.21924 -23.85736 -23.25549 -22.77970 -21.01564 -20.77145 -20.14688 -18.41509 -18.12906 -17.82072 -16.89045 -16.48005 -16.01515 -15.76914 -15.58710 -15.22749 -14.94699 -14.87651 -14.58906 -14.35475 -14.28694 -13.44667 -13.31901 -13.24512 -13.07245 -12.89689 -12.53222 -12.50569 -12.19796 -12.02598 -11.99557 -11.61387 -11.43748 -11.30527 -11.21843 -10.96118 -10.83616 -10.53923 -10.19399 -10.11060 -9.38389 -8.29870 -6.29110 1.33619 1.41389 1.46640 1.53839 2.22188 2.39135 2.68472 2.98839 3.46996 3.47597 3.59245 3.86057 4.04056 4.16459 4.23618 4.25682 4.34698 4.37198 4.45278 4.45820 4.52236 4.57461 4.66728 4.72304 4.87769 4.91635 4.99085 5.02446 5.11146 5.20270 5.22028 5.24035 5.28369 5.34029 5.43281 5.55886 5.59738 5.71183 5.79378 5.90020 6.13608 6.19673 6.34922 6.76100 7.12746 7.35689 8.85689 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017457 B = 0.007020 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.561916 B = 3987.866935 C = 4601.531702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.024 3.976 3 Si 0.925 3.075 4 H -0.264 1.264 5 H -0.302 1.302 6 H -0.224 1.224 7 C -0.486 4.486 8 H 0.024 0.976 9 C -0.029 4.029 10 C 0.097 3.903 11 N -0.506 5.506 12 C 0.064 3.936 13 C 0.525 3.475 14 O -0.601 6.601 15 N -0.701 5.701 16 C 0.150 3.850 17 H 0.092 0.908 18 C -0.121 4.121 19 C -0.108 4.108 20 C -0.118 4.118 21 C -0.109 4.109 22 C 0.059 3.941 23 H 0.026 0.974 24 C -0.181 4.181 25 C -0.154 4.154 26 H 0.263 0.737 27 H 0.093 0.907 28 H 0.012 0.988 29 H 0.097 0.903 30 H 0.045 0.955 31 H 0.406 0.594 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.101 0.899 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.929 -0.035 -14.912 22.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.174 4.174 3 Si 0.749 3.251 4 H -0.189 1.189 5 H -0.229 1.229 6 H -0.146 1.146 7 C -0.524 4.524 8 H 0.043 0.957 9 C -0.030 4.030 10 C -0.031 4.031 11 N -0.231 5.231 12 C -0.067 4.067 13 C 0.312 3.688 14 O -0.482 6.482 15 N -0.353 5.353 16 C 0.046 3.954 17 H 0.110 0.890 18 C -0.160 4.160 19 C -0.146 4.146 20 C -0.156 4.156 21 C -0.147 4.147 22 C -0.050 4.050 23 H 0.044 0.956 24 C -0.219 4.219 25 C -0.192 4.192 26 H 0.072 0.928 27 H 0.111 0.889 28 H 0.031 0.969 29 H 0.115 0.885 30 H 0.063 0.937 31 H 0.244 0.756 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.119 0.881 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 16.794 -0.519 -14.505 22.197 hybrid contribution -1.767 0.922 0.195 2.003 sum 15.027 0.403 -14.310 20.754 Atomic orbital electron populations 1.70157 1.08655 1.27973 1.51426 1.25782 0.94902 1.02946 0.93811 0.86085 0.80671 0.78480 0.79910 1.18901 1.22900 1.14622 1.20432 0.92994 0.93325 1.45599 0.95749 1.19304 0.90483 1.02904 0.90303 1.21900 0.99629 0.89609 0.91915 1.62651 1.32301 1.21306 1.06874 1.21880 0.92660 0.93384 0.98728 1.20490 0.79352 0.86427 0.82486 1.90695 1.39707 1.40755 1.77063 1.45590 1.35731 1.30389 1.23577 1.21177 0.90594 0.86912 0.96762 0.88997 1.21855 1.00374 1.01450 0.92320 1.21479 0.97774 0.94178 1.01165 1.21582 1.02434 0.98531 0.93027 1.21627 0.97208 0.97649 0.98183 1.22122 0.99046 0.96188 0.87678 0.95591 1.23118 1.01006 0.97900 0.99858 1.22637 1.02353 0.91229 1.02952 0.92810 0.88885 0.96931 0.88502 0.93703 0.75591 0.88908 0.92089 0.90146 0.89656 0.89585 0.92768 0.89283 0.91999 0.88096 0.91039 0.91756 0.87885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.89 13.96 21.45 0.30 -58.59 16 2 C 0.02 1.35 5.30 84.66 0.45 1.79 16 3 Si 0.92 42.45 25.77 68.60 1.77 44.22 16 4 H -0.26 -11.41 7.04 99.48 0.70 -10.71 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.22 -9.21 5.77 99.48 0.57 -8.64 16 7 C -0.49 -26.97 7.67 25.60 0.20 -26.78 16 8 H 0.02 1.56 7.96 -2.91 -0.02 1.54 16 9 C -0.03 -1.25 0.12 -52.93 -0.01 -1.26 16 10 C 0.10 3.66 3.57 86.30 0.31 3.96 16 11 N -0.51 -17.37 4.53 -877.21 -3.98 -21.34 16 12 C 0.06 2.71 4.32 85.36 0.37 3.08 16 13 C 0.52 20.28 7.79 87.60 0.68 20.96 16 14 O -0.60 -27.97 17.82 -3.04 -0.05 -28.03 16 15 N -0.70 -19.21 5.30 -446.38 -2.36 -21.58 16 16 C 0.15 3.21 2.94 45.05 0.13 3.34 16 17 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 18 C -0.12 -1.74 5.61 30.57 0.17 -1.57 16 19 C -0.11 -1.18 5.91 30.63 0.18 -1.00 16 20 C -0.12 -1.69 5.90 30.63 0.18 -1.51 16 21 C -0.11 -2.18 4.69 30.57 0.14 -2.04 16 22 C 0.06 1.57 1.71 44.86 0.08 1.64 16 23 H 0.03 0.81 8.05 -2.38 -0.02 0.79 16 24 C -0.18 -6.88 7.70 30.59 0.24 -6.65 16 25 C -0.15 -5.95 9.26 30.59 0.28 -5.66 16 26 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 27 H 0.09 2.94 6.34 -2.39 -0.02 2.93 16 28 H 0.01 0.54 6.63 -2.39 -0.02 0.52 16 29 H 0.10 4.66 6.30 -2.39 -0.02 4.64 16 30 H 0.05 2.21 7.97 -2.39 -0.02 2.19 16 31 H 0.41 9.38 8.78 -92.71 -0.81 8.57 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.09 0.96 8.14 -2.39 -0.02 0.95 16 37 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 39 H 0.06 1.40 6.54 -2.38 -0.02 1.38 16 40 H 0.10 3.20 8.03 -2.39 -0.02 3.18 16 41 H 0.07 2.91 7.97 -2.38 -0.02 2.89 16 42 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 Total: -1.00 -71.05 324.09 -0.88 -71.94 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.04 Total: 25.06 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 3.40 Total: -11.68 kcal Atomic # 7 Polarization: -95.47 SS G_CDS: -6.04 Total: -101.51 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.05 Total: -28.03 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.77 Total: 44.22 kcal Total: -71.05 -0.88 -71.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602786174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.500 kcal (2) G-P(sol) polarization free energy of solvation -71.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds