Wall clock time and date at job start Tue Mar 31 2020 00:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99788 * 2 1 4 4 H 1.48498 * 109.46896 * 266.00876 * 3 2 1 5 5 H 1.48498 * 109.47019 * 26.00798 * 3 2 1 6 6 H 1.48502 * 109.47099 * 146.00748 * 3 2 1 7 7 C 1.37874 * 120.00139 * 179.72426 * 2 1 3 8 8 H 1.08001 * 120.00026 * 358.95216 * 7 2 1 9 9 C 1.50701 * 119.99999 * 178.96050 * 7 2 1 10 10 C 1.52992 * 115.55325 * 86.77525 * 9 7 2 11 11 N 1.46901 * 109.47443 * 65.97538 * 10 9 7 12 12 C 1.47032 * 110.99751 * 61.66049 * 11 10 9 13 13 C 1.50139 * 110.65691 * 188.95267 * 12 11 10 14 14 O 1.21285 * 118.40862 * 195.57405 * 13 12 11 15 15 N 1.34009 * 123.18938 * 15.55165 * 13 12 11 16 16 C 1.45638 * 121.94705 * 356.82471 * 15 13 12 17 17 H 1.09001 * 108.93445 * 262.68938 * 16 15 13 18 18 C 1.52704 * 111.60127 * 142.36312 * 16 15 13 19 19 C 1.53207 * 108.86041 * 177.45096 * 18 16 15 20 20 C 1.52888 * 109.97221 * 59.33675 * 19 18 16 21 21 C 1.53203 * 109.99277 * 301.15522 * 20 19 18 22 22 C 1.46722 * 111.00233 * 299.10539 * 11 10 9 23 23 H 1.08996 * 109.39241 * 72.70204 * 22 11 10 24 24 C 1.53004 * 117.49641 * 301.09930 * 9 7 2 25 25 C 1.53001 * 117.49626 * 232.44369 * 9 7 2 26 26 H 0.96998 * 120.00134 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47352 * 185.97892 * 10 9 7 28 28 H 1.09013 * 109.47075 * 305.97958 * 10 9 7 29 29 H 1.08999 * 109.24221 * 309.26381 * 12 11 10 30 30 H 1.09001 * 109.23500 * 68.68921 * 12 11 10 31 31 H 0.97004 * 119.02170 * 176.84120 * 15 13 12 32 32 H 1.08997 * 109.57029 * 297.26687 * 18 16 15 33 33 H 1.08998 * 109.56906 * 57.63979 * 18 16 15 34 34 H 1.09002 * 109.38916 * 179.48735 * 19 18 16 35 35 H 1.09003 * 109.38964 * 299.18136 * 19 18 16 36 36 H 1.08993 * 109.38817 * 61.31785 * 20 19 18 37 37 H 1.09008 * 109.38228 * 181.10715 * 20 19 18 38 38 H 1.09004 * 109.57261 * 179.20062 * 21 20 19 39 39 H 1.08994 * 109.57326 * 299.44142 * 21 20 19 40 40 H 1.08997 * 117.49828 * 0.02562 * 24 9 7 41 41 H 1.08996 * 117.49606 * 145.01748 * 24 9 7 42 42 H 1.08992 * 117.49733 * 214.97916 * 25 9 7 43 43 H 1.09003 * 117.49769 * 359.97436 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5810 1.9977 -1.3967 5 1 1.4069 2.6756 0.6139 6 1 3.5020 1.4661 0.7828 7 6 2.0046 -1.1940 0.0057 8 1 1.4648 -2.1292 0.0274 9 6 3.5114 -1.1942 -0.0179 10 6 4.1929 -1.0975 1.3484 11 7 3.9075 -2.3113 2.1250 12 6 4.4409 -3.5049 1.4522 13 6 3.9620 -4.7548 2.1323 14 8 4.5291 -5.7985 1.8874 15 7 2.9385 -4.7731 2.9972 16 6 2.2474 -3.5559 3.3993 17 1 2.6550 -3.2157 4.3513 18 6 0.7463 -3.7877 3.5572 19 6 0.0929 -2.4893 4.0411 20 6 0.3474 -1.3690 3.0323 21 6 1.8542 -1.1585 2.8524 22 6 2.4656 -2.4659 2.3481 23 1 1.9847 -2.7611 1.4156 24 6 4.1994 -0.5094 -1.2006 25 6 4.2009 -2.0364 -1.0932 26 1 -0.4850 0.8400 -0.0004 27 1 5.2697 -0.9988 1.2112 28 1 3.8134 -0.2265 1.8830 29 1 4.1086 -3.5108 0.4142 30 1 5.5302 -3.4762 1.4803 31 1 2.6497 -5.6223 3.3666 32 1 0.3184 -4.0762 2.5972 33 1 0.5739 -4.5777 4.2881 34 1 -0.9810 -2.6426 4.1482 35 1 0.5149 -2.2097 5.0065 36 1 -0.0973 -1.6371 2.0741 37 1 -0.1044 -0.4458 3.3953 38 1 2.0279 -0.3686 2.1217 39 1 2.3002 -0.8777 3.8065 40 1 3.5622 -0.0585 -1.9613 41 1 5.1377 0.0097 -1.0053 42 1 5.1401 -2.5212 -0.8273 43 1 3.5646 -2.5906 -1.7832 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602786175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:26 Heat of formation + Delta-G solvation = 2.143697 kcal Electronic energy + Delta-G solvation = -24323.773146 eV Core-core repulsion = 21176.654945 eV Total energy + Delta-G solvation = -3147.118200 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.51831 -38.20707 -37.18735 -34.48542 -33.77038 -32.32627 -29.56897 -28.69615 -27.69796 -25.78854 -23.73732 -22.23514 -21.90708 -21.51094 -19.71920 -19.09070 -18.26406 -16.74327 -16.61925 -16.35356 -15.06880 -14.96959 -14.62185 -14.11706 -13.93868 -13.64187 -13.47847 -13.22120 -13.02509 -12.81572 -12.54283 -12.07050 -11.96332 -11.48552 -11.31573 -11.00261 -10.89730 -10.71256 -10.67393 -10.52907 -10.37982 -10.02736 -9.87128 -9.61490 -9.54073 -9.37830 -9.09746 -8.72039 -8.70090 -8.49594 -7.60551 -6.22786 -4.20036 3.00240 3.19465 3.30605 3.33597 3.65483 4.29349 4.37239 4.81450 4.95122 5.00024 5.13579 5.33124 5.44871 5.63824 5.71903 5.73335 5.79031 5.86098 5.95325 5.96159 6.07035 6.10827 6.13826 6.15793 6.21063 6.38302 6.42773 6.53063 6.54056 6.60012 6.72436 6.77522 6.94720 7.00859 7.04946 7.09789 7.26032 7.34070 7.53622 7.63697 7.65624 7.72957 8.33019 8.57588 8.73253 9.37773 10.86234 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016818 B = 0.009973 C = 0.007067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.454282 B = 2807.007351 C = 3961.194970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.087 3.913 3 Si 0.868 3.132 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.258 1.258 7 C -0.485 4.485 8 H 0.082 0.918 9 C -0.035 4.035 10 C 0.081 3.919 11 N -0.519 5.519 12 C 0.024 3.976 13 C 0.529 3.471 14 O -0.573 6.573 15 N -0.713 5.713 16 C 0.140 3.860 17 H 0.069 0.931 18 C -0.122 4.122 19 C -0.113 4.113 20 C -0.114 4.114 21 C -0.101 4.101 22 C 0.073 3.927 23 H 0.096 0.904 24 C -0.197 4.197 25 C -0.187 4.187 26 H 0.265 0.735 27 H 0.053 0.947 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.392 0.608 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.101 0.899 39 H 0.041 0.959 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.339 -2.080 6.420 7.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.116 4.116 3 Si 0.697 3.303 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.183 1.183 7 C -0.522 4.522 8 H 0.099 0.901 9 C -0.037 4.037 10 C -0.047 4.047 11 N -0.242 5.242 12 C -0.106 4.106 13 C 0.317 3.683 14 O -0.452 6.452 15 N -0.364 5.364 16 C 0.035 3.965 17 H 0.087 0.913 18 C -0.161 4.161 19 C -0.151 4.151 20 C -0.152 4.152 21 C -0.139 4.139 22 C -0.035 4.035 23 H 0.114 0.886 24 C -0.235 4.235 25 C -0.224 4.224 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.227 0.773 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.109 0.891 37 H 0.069 0.931 38 H 0.119 0.881 39 H 0.060 0.940 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.777 -2.252 6.694 7.589 hybrid contribution -0.113 0.649 -0.722 0.978 sum 2.665 -1.603 5.972 6.733 Atomic orbital electron populations 1.69841 1.05960 1.27101 1.49225 1.24800 0.94492 0.98342 0.93956 0.87062 0.80557 0.83858 0.78863 1.20528 1.22134 1.18287 1.20166 0.86040 0.94189 1.51815 0.90067 1.20272 0.95779 0.99975 0.87709 1.22038 0.97618 0.92259 0.92788 1.62932 1.14488 1.01654 1.45152 1.22459 1.01303 0.87677 0.99184 1.20415 0.79028 0.90875 0.77989 1.90694 1.56852 1.33755 1.63927 1.45688 1.34130 1.10573 1.45965 1.21150 0.91964 0.84448 0.98977 0.91344 1.21781 0.94181 0.98279 1.01882 1.21522 0.99566 0.94923 0.99120 1.21490 0.96758 0.96675 1.00273 1.21665 0.94325 0.97724 1.00205 1.22170 0.87968 0.94936 0.98419 0.88645 1.22930 1.01459 0.94784 1.04352 1.22916 1.01219 0.93106 1.05169 0.92484 0.92894 0.89930 0.88649 0.88334 0.77304 0.91129 0.92267 0.92320 0.92719 0.89085 0.93070 0.88096 0.94039 0.89524 0.91003 0.90735 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.72 13.51 55.43 0.75 -21.97 16 2 C 0.09 2.11 4.13 -17.82 -0.07 2.04 16 3 Si 0.87 19.40 23.90 -169.99 -4.06 15.34 16 4 H -0.28 -6.38 7.08 56.52 0.40 -5.98 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.26 -5.47 5.83 56.52 0.33 -5.14 16 7 C -0.49 -11.22 5.65 -34.44 -0.19 -11.41 16 8 H 0.08 2.10 6.42 -52.49 -0.34 1.77 16 9 C -0.04 -0.71 0.47 -155.66 -0.07 -0.78 16 10 C 0.08 1.51 4.75 -3.83 -0.02 1.49 16 11 N -0.52 -9.24 4.87 -228.53 -1.11 -10.35 16 12 C 0.02 0.43 4.86 -5.18 -0.03 0.40 16 13 C 0.53 9.64 7.79 -11.60 -0.09 9.55 16 14 O -0.57 -11.94 17.82 5.55 0.10 -11.84 16 15 N -0.71 -11.20 5.29 -54.89 -0.29 -11.49 16 16 C 0.14 2.14 2.96 -68.55 -0.20 1.94 16 17 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 18 C -0.12 -1.69 5.60 -26.78 -0.15 -1.84 16 19 C -0.11 -1.58 5.91 -26.68 -0.16 -1.74 16 20 C -0.11 -1.99 5.89 -26.68 -0.16 -2.14 16 21 C -0.10 -1.85 3.92 -26.69 -0.10 -1.95 16 22 C 0.07 1.31 0.90 -67.88 -0.06 1.24 16 23 H 0.10 2.00 4.76 -51.93 -0.25 1.75 16 24 C -0.20 -3.85 7.64 -26.69 -0.20 -4.06 16 25 C -0.19 -3.50 7.69 -26.69 -0.21 -3.70 16 26 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 27 H 0.05 0.92 8.09 -51.93 -0.42 0.50 16 28 H 0.08 1.62 4.68 -51.92 -0.24 1.38 16 29 H 0.10 1.77 4.58 -51.93 -0.24 1.53 16 30 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 31 H 0.39 5.44 8.79 -40.82 -0.36 5.09 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 1.88 7.69 -51.93 -0.40 1.48 16 37 H 0.05 0.89 8.14 -51.92 -0.42 0.46 16 38 H 0.10 2.09 2.58 -51.93 -0.13 1.96 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 1.81 7.26 -51.93 -0.38 1.44 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.07 1.26 7.18 -51.93 -0.37 0.89 16 43 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 LS Contribution 305.32 15.07 4.60 4.60 Total: -1.00 -25.57 305.32 -8.30 -33.87 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -6.56 Total: 12.80 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -1.72 Total: -10.97 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -0.65 Total: -43.81 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.10 Total: -11.84 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.06 Total: 15.34 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -25.57 -8.30 -33.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602786175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.014 kcal (2) G-P(sol) polarization free energy of solvation -25.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds