Wall clock time and date at job start Tue Mar 31 2020 00:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99788 * 2 1 4 4 H 1.48498 * 109.46896 * 266.00876 * 3 2 1 5 5 H 1.48498 * 109.47019 * 26.00798 * 3 2 1 6 6 H 1.48502 * 109.47099 * 146.00748 * 3 2 1 7 7 C 1.37874 * 120.00139 * 179.72426 * 2 1 3 8 8 H 1.08001 * 120.00026 * 358.95216 * 7 2 1 9 9 C 1.50701 * 119.99999 * 178.96050 * 7 2 1 10 10 C 1.52992 * 115.55325 * 86.77525 * 9 7 2 11 11 N 1.46901 * 109.47443 * 65.97538 * 10 9 7 12 12 C 1.47032 * 110.99751 * 61.66049 * 11 10 9 13 13 C 1.50139 * 110.65691 * 188.95267 * 12 11 10 14 14 O 1.21285 * 118.40862 * 195.57405 * 13 12 11 15 15 N 1.34009 * 123.18938 * 15.55165 * 13 12 11 16 16 C 1.45638 * 121.94705 * 356.82471 * 15 13 12 17 17 H 1.09001 * 108.93445 * 262.68938 * 16 15 13 18 18 C 1.52704 * 111.60127 * 142.36312 * 16 15 13 19 19 C 1.53207 * 108.86041 * 177.45096 * 18 16 15 20 20 C 1.52888 * 109.97221 * 59.33675 * 19 18 16 21 21 C 1.53203 * 109.99277 * 301.15522 * 20 19 18 22 22 C 1.46722 * 111.00233 * 299.10539 * 11 10 9 23 23 H 1.08996 * 109.39241 * 72.70204 * 22 11 10 24 24 C 1.53004 * 117.49641 * 301.09930 * 9 7 2 25 25 C 1.53001 * 117.49626 * 232.44369 * 9 7 2 26 26 H 0.96998 * 120.00134 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47352 * 185.97892 * 10 9 7 28 28 H 1.09013 * 109.47075 * 305.97958 * 10 9 7 29 29 H 1.08999 * 109.24221 * 309.26381 * 12 11 10 30 30 H 1.09001 * 109.23500 * 68.68921 * 12 11 10 31 31 H 0.97004 * 119.02170 * 176.84120 * 15 13 12 32 32 H 1.08997 * 109.57029 * 297.26687 * 18 16 15 33 33 H 1.08998 * 109.56906 * 57.63979 * 18 16 15 34 34 H 1.09002 * 109.38916 * 179.48735 * 19 18 16 35 35 H 1.09003 * 109.38964 * 299.18136 * 19 18 16 36 36 H 1.08993 * 109.38817 * 61.31785 * 20 19 18 37 37 H 1.09008 * 109.38228 * 181.10715 * 20 19 18 38 38 H 1.09004 * 109.57261 * 179.20062 * 21 20 19 39 39 H 1.08994 * 109.57326 * 299.44142 * 21 20 19 40 40 H 1.08997 * 117.49828 * 0.02562 * 24 9 7 41 41 H 1.08996 * 117.49606 * 145.01748 * 24 9 7 42 42 H 1.08992 * 117.49733 * 214.97916 * 25 9 7 43 43 H 1.09003 * 117.49769 * 359.97436 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.5810 1.9977 -1.3967 5 1 1.4069 2.6756 0.6139 6 1 3.5020 1.4661 0.7828 7 6 2.0046 -1.1940 0.0057 8 1 1.4648 -2.1292 0.0274 9 6 3.5114 -1.1942 -0.0179 10 6 4.1929 -1.0975 1.3484 11 7 3.9075 -2.3113 2.1250 12 6 4.4409 -3.5049 1.4522 13 6 3.9620 -4.7548 2.1323 14 8 4.5291 -5.7985 1.8874 15 7 2.9385 -4.7731 2.9972 16 6 2.2474 -3.5559 3.3993 17 1 2.6550 -3.2157 4.3513 18 6 0.7463 -3.7877 3.5572 19 6 0.0929 -2.4893 4.0411 20 6 0.3474 -1.3690 3.0323 21 6 1.8542 -1.1585 2.8524 22 6 2.4656 -2.4659 2.3481 23 1 1.9847 -2.7611 1.4156 24 6 4.1994 -0.5094 -1.2006 25 6 4.2009 -2.0364 -1.0932 26 1 -0.4850 0.8400 -0.0004 27 1 5.2697 -0.9988 1.2112 28 1 3.8134 -0.2265 1.8830 29 1 4.1086 -3.5108 0.4142 30 1 5.5302 -3.4762 1.4803 31 1 2.6497 -5.6223 3.3666 32 1 0.3184 -4.0762 2.5972 33 1 0.5739 -4.5777 4.2881 34 1 -0.9810 -2.6426 4.1482 35 1 0.5149 -2.2097 5.0065 36 1 -0.0973 -1.6371 2.0741 37 1 -0.1044 -0.4458 3.3953 38 1 2.0279 -0.3686 2.1217 39 1 2.3002 -0.8777 3.8065 40 1 3.5622 -0.0585 -1.9613 41 1 5.1377 0.0097 -1.0053 42 1 5.1401 -2.5212 -0.8273 43 1 3.5646 -2.5906 -1.7832 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602786175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:25 Heat of formation + Delta-G solvation = -15.974904 kcal Electronic energy + Delta-G solvation = -24324.558827 eV Core-core repulsion = 21176.654945 eV Total energy + Delta-G solvation = -3147.903882 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.93750 -39.71194 -38.61631 -35.93292 -35.18226 -34.14395 -30.93757 -30.06637 -29.14565 -27.58290 -25.14563 -23.65407 -23.40642 -22.92368 -21.12736 -20.60653 -19.73230 -18.35575 -18.00454 -17.91390 -16.69861 -16.48091 -16.03090 -15.61659 -15.41000 -15.05059 -14.86194 -14.69944 -14.62226 -14.39411 -14.03139 -13.46125 -13.44769 -12.99788 -12.79052 -12.57129 -12.36665 -12.28352 -12.10291 -12.02048 -11.96991 -11.43995 -11.38803 -11.10538 -11.02952 -10.90165 -10.71186 -10.51024 -10.19323 -9.97705 -9.12414 -8.12400 -6.09333 1.38726 1.47120 1.52293 1.56804 2.34331 2.44475 2.91341 3.19868 3.29908 3.57504 3.82387 4.05712 4.11557 4.18689 4.33170 4.38241 4.40745 4.47669 4.52953 4.62145 4.67649 4.70799 4.73482 4.77934 4.86367 4.97423 5.04390 5.11885 5.18058 5.27252 5.33808 5.37796 5.44563 5.46988 5.54631 5.72610 5.77869 5.86022 5.91166 6.13114 6.23304 6.30206 6.43323 6.84050 7.20526 7.48961 8.98803 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016818 B = 0.009973 C = 0.007067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.454282 B = 2807.007351 C = 3961.194970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.055 3.945 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.305 1.305 6 H -0.234 1.234 7 C -0.464 4.464 8 H 0.044 0.956 9 C -0.051 4.051 10 C 0.085 3.915 11 N -0.511 5.511 12 C 0.027 3.973 13 C 0.526 3.474 14 O -0.602 6.602 15 N -0.702 5.702 16 C 0.145 3.855 17 H 0.086 0.914 18 C -0.117 4.117 19 C -0.105 4.105 20 C -0.109 4.109 21 C -0.100 4.100 22 C 0.077 3.923 23 H 0.059 0.941 24 C -0.196 4.196 25 C -0.173 4.173 26 H 0.260 0.740 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.403 0.597 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.078 0.922 36 H 0.049 0.951 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.064 -2.373 8.256 9.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.145 4.145 3 Si 0.733 3.267 4 H -0.212 1.212 5 H -0.232 1.232 6 H -0.157 1.157 7 C -0.501 4.501 8 H 0.062 0.938 9 C -0.053 4.053 10 C -0.043 4.043 11 N -0.234 5.234 12 C -0.104 4.104 13 C 0.314 3.686 14 O -0.484 6.484 15 N -0.352 5.352 16 C 0.040 3.960 17 H 0.103 0.897 18 C -0.156 4.156 19 C -0.143 4.143 20 C -0.147 4.147 21 C -0.137 4.137 22 C -0.031 4.031 23 H 0.077 0.923 24 C -0.234 4.234 25 C -0.210 4.210 26 H 0.069 0.931 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.133 0.867 31 H 0.240 0.760 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.506 -2.551 8.546 9.993 hybrid contribution -0.705 0.693 -1.334 1.660 sum 3.801 -1.859 7.212 8.362 Atomic orbital electron populations 1.69965 1.07295 1.27097 1.51663 1.25210 0.94677 1.00390 0.94202 0.86466 0.80594 0.81140 0.78538 1.21217 1.23246 1.15736 1.20099 0.87753 0.92354 1.49895 0.93840 1.20242 0.94094 1.01729 0.89226 1.21976 0.98606 0.92346 0.91357 1.62995 1.14167 1.01566 1.44706 1.22451 1.02209 0.87310 0.98413 1.20502 0.79326 0.90583 0.78207 1.90684 1.58027 1.34617 1.65067 1.45603 1.33173 1.11373 1.45051 1.21156 0.93038 0.83355 0.98407 0.89657 1.21757 0.92712 0.99217 1.01869 1.21463 1.00672 0.93428 0.98778 1.21368 0.96060 0.97917 0.99368 1.21587 0.94879 0.97082 1.00203 1.21999 0.87724 0.95663 0.97731 0.92282 1.22956 1.01997 0.95400 1.03043 1.22897 1.01681 0.92762 1.03689 0.93089 0.90614 0.90753 0.89786 0.86683 0.75964 0.93200 0.88862 0.91090 0.90346 0.93174 0.93584 0.90762 0.92248 0.91408 0.88411 0.88168 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.48 13.51 21.45 0.29 -49.19 16 2 C 0.05 2.72 4.13 84.65 0.35 3.06 16 3 Si 0.91 39.89 23.90 68.60 1.64 41.53 16 4 H -0.29 -12.82 7.08 99.48 0.70 -12.11 16 5 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.23 -9.32 5.83 99.48 0.58 -8.74 16 7 C -0.46 -21.99 5.65 25.60 0.14 -21.85 16 8 H 0.04 2.39 6.42 -2.91 -0.02 2.37 16 9 C -0.05 -2.00 0.47 -52.93 -0.02 -2.03 16 10 C 0.09 2.99 4.75 86.30 0.41 3.40 16 11 N -0.51 -17.17 4.87 -876.93 -4.27 -21.44 16 12 C 0.03 0.88 4.86 85.36 0.42 1.30 16 13 C 0.53 18.26 7.79 87.60 0.68 18.94 16 14 O -0.60 -24.22 17.82 -3.05 -0.05 -24.28 16 15 N -0.70 -20.53 5.29 -446.40 -2.36 -22.89 16 16 C 0.15 4.11 2.96 45.05 0.13 4.25 16 17 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 18 C -0.12 -2.96 5.60 30.57 0.17 -2.79 16 19 C -0.11 -2.72 5.91 30.63 0.18 -2.54 16 20 C -0.11 -3.81 5.89 30.62 0.18 -3.62 16 21 C -0.10 -3.56 3.92 30.62 0.12 -3.44 16 22 C 0.08 2.69 0.90 44.91 0.04 2.73 16 23 H 0.06 2.54 4.76 -2.39 -0.01 2.53 16 24 C -0.20 -7.31 7.64 30.62 0.23 -7.07 16 25 C -0.17 -6.24 7.69 30.62 0.24 -6.01 16 26 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 27 H 0.08 2.34 8.09 -2.39 -0.02 2.32 16 28 H 0.07 2.76 4.68 -2.38 -0.01 2.75 16 29 H 0.08 3.02 4.58 -2.39 -0.01 3.01 16 30 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16 31 H 0.40 10.18 8.79 -92.71 -0.81 9.37 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 35 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.05 2.17 7.69 -2.39 -0.02 2.15 16 37 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.07 3.08 2.58 -2.38 -0.01 3.07 16 39 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.07 2.79 7.26 -2.39 -0.02 2.77 16 41 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 42 H 0.10 3.11 7.18 -2.39 -0.02 3.09 16 43 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -56.73 305.32 -1.40 -58.13 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: 0.08 Total: 33.81 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 3.27 Total: -15.67 kcal Atomic # 7 Polarization: -87.18 SS G_CDS: -6.34 Total: -93.52 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.05 Total: -24.28 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 1.64 Total: 41.53 kcal Total: -56.73 -1.40 -58.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602786175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.157 kcal (2) G-P(sol) polarization free energy of solvation -56.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds