Wall clock time and date at job start Tue Mar 31 2020 00:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99987 * 2 1 4 4 H 1.48499 * 109.46902 * 90.00519 * 3 2 1 5 5 H 1.48500 * 109.46875 * 210.00356 * 3 2 1 6 6 H 1.48503 * 109.47169 * 330.00391 * 3 2 1 7 7 C 1.37870 * 119.99929 * 180.28061 * 2 1 3 8 8 H 1.08001 * 120.00335 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00142 * 359.97438 * 7 2 1 10 10 C 1.53002 * 115.55050 * 188.09933 * 9 7 2 11 11 N 1.46893 * 109.47143 * 302.92990 * 10 9 7 12 12 C 1.50106 * 111.00367 * 292.83732 * 11 10 9 13 13 C 1.50918 * 102.23396 * 213.14350 * 12 11 10 14 14 H 1.08995 * 109.98939 * 291.16915 * 13 12 11 15 15 C 1.50303 * 125.70057 * 155.99228 * 13 12 11 16 16 C 1.55936 * 104.16451 * 214.80432 * 15 13 12 17 17 C 1.56392 * 105.79459 * 7.51074 * 16 15 13 18 18 C 1.51019 * 101.60069 * 25.01223 * 17 16 15 19 19 H 1.08994 * 110.05274 * 69.39858 * 18 17 16 20 20 C 1.49625 * 111.00163 * 173.01917 * 11 10 9 21 21 H 1.08992 * 110.37098 * 233.50822 * 20 11 10 22 22 C 1.50705 * 110.36528 * 355.83513 * 20 11 10 23 23 N 1.34776 * 119.99482 * 233.27609 * 22 20 11 24 24 O 1.21277 * 120.00342 * 53.26838 * 22 20 11 25 25 C 1.53005 * 117.49853 * 42.39029 * 9 7 2 26 26 C 1.52998 * 117.49752 * 333.76815 * 9 7 2 27 27 H 0.97006 * 120.00151 * 359.72049 * 1 2 3 28 28 H 1.09004 * 109.47194 * 62.93210 * 10 9 7 29 29 H 1.08997 * 109.47056 * 182.93057 * 10 9 7 30 30 H 1.09006 * 110.84749 * 331.32739 * 12 11 10 31 31 H 1.08998 * 110.85034 * 94.75110 * 12 11 10 32 32 H 1.09005 * 110.49559 * 333.46811 * 15 13 12 33 33 H 1.09000 * 110.49714 * 96.13201 * 15 13 12 34 34 H 1.08991 * 110.19155 * 126.59686 * 16 15 13 35 35 H 1.09005 * 110.18197 * 248.35959 * 16 15 13 36 36 H 1.09004 * 110.99894 * 143.09016 * 17 16 15 37 37 H 1.09000 * 111.00524 * 266.89213 * 17 16 15 38 38 H 0.96998 * 120.00302 * 359.97438 * 23 22 20 39 39 H 0.97009 * 119.99965 * 180.02562 * 23 22 20 40 40 H 1.08992 * 117.49811 * 0.02562 * 25 9 7 41 41 H 1.09003 * 117.49305 * 145.02632 * 25 9 7 42 42 H 1.09002 * 117.50378 * 214.98092 * 26 9 7 43 43 H 1.09003 * 117.49813 * 0.02562 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4465 2.6528 -0.7000 7 6 2.0045 -1.1940 -0.0058 8 1 3.0845 -1.1941 -0.0063 9 6 1.2510 -2.4991 -0.0117 10 6 2.1046 -3.7548 0.1766 11 7 3.1372 -3.8059 -0.8669 12 6 2.5243 -4.0192 -2.2204 13 6 3.5774 -4.8414 -2.9223 14 1 4.4634 -4.2336 -3.1060 15 6 3.3389 -5.7659 -4.0831 16 6 4.3436 -6.9358 -3.8519 17 6 4.9686 -6.6874 -2.4400 18 6 3.8883 -5.8732 -1.7686 19 1 3.0140 -6.4960 -1.5797 20 6 4.0959 -4.9274 -0.6182 21 1 5.1207 -4.5563 -0.6122 22 6 3.7766 -5.6107 0.6866 23 7 4.7382 -5.7681 1.6177 24 8 2.6544 -6.0188 0.8987 25 6 0.0293 -2.6055 -0.9267 26 6 -0.1563 -2.5050 0.5887 27 1 -0.4851 0.8401 0.0041 28 1 2.5800 -3.7273 1.1572 29 1 1.4712 -4.6389 0.1045 30 1 1.5892 -4.5736 -2.1397 31 1 2.3669 -3.0683 -2.7293 32 1 2.3135 -6.1357 -4.0720 33 1 3.5527 -5.2596 -5.0244 34 1 3.8189 -7.8910 -3.8682 35 1 5.1205 -6.9209 -4.6163 36 1 5.1324 -7.6281 -1.9143 37 1 5.8955 -6.1192 -2.5176 38 1 5.6358 -5.4420 1.4479 39 1 4.5328 -6.2083 2.4574 40 1 -0.2291 -1.7317 -1.5247 41 1 -0.1663 -3.5702 -1.3947 42 1 -0.4742 -3.4036 1.1176 43 1 -0.5373 -1.5648 0.9875 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602816568.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:41 Heat of formation + Delta-G solvation = 16.941504 kcal Electronic energy + Delta-G solvation = -23273.414316 eV Core-core repulsion = 20126.937797 eV Total energy + Delta-G solvation = -3146.476519 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.91461 -38.46819 -36.71199 -34.51224 -33.52986 -31.44903 -30.27577 -29.15783 -26.56964 -25.68651 -24.37810 -22.14135 -20.73148 -20.64121 -19.81250 -19.33587 -18.90631 -17.02868 -16.76973 -15.91043 -15.63344 -14.78118 -14.70024 -14.56114 -14.29747 -13.86822 -13.54784 -13.22633 -12.77887 -12.48957 -12.32825 -11.88421 -11.48324 -11.33597 -11.18264 -10.97996 -10.82732 -10.72077 -10.60871 -10.45427 -10.29249 -10.18417 -10.05955 -9.80873 -9.57589 -9.55993 -9.11740 -8.69008 -8.16837 -7.90134 -7.56446 -5.77020 -3.84264 2.78636 3.36168 3.42986 3.47217 3.67332 4.08917 4.40517 4.51198 4.74973 4.85877 5.05993 5.18366 5.25388 5.32153 5.38577 5.48676 5.64896 5.71725 5.74723 5.84267 5.98719 6.01593 6.06763 6.12758 6.22993 6.33529 6.38099 6.53181 6.59278 6.70720 6.74553 6.84961 6.95276 7.13859 7.34097 7.40972 7.47904 7.51514 7.73559 7.88058 8.13632 8.44128 8.45288 8.74575 9.14733 9.70350 11.14919 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018874 B = 0.005926 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.192009 B = 4724.028483 C = 5114.579725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.051 3.949 3 Si 0.894 3.106 4 H -0.284 1.284 5 H -0.274 1.274 6 H -0.289 1.289 7 C -0.449 4.449 8 H 0.066 0.934 9 C 0.023 3.977 10 C 0.089 3.911 11 N -0.476 5.476 12 C 0.067 3.933 13 C -0.113 4.113 14 H 0.081 0.919 15 C -0.105 4.105 16 C -0.120 4.120 17 C -0.103 4.103 18 C -0.127 4.127 19 H 0.081 0.919 20 C 0.062 3.938 21 H 0.095 0.905 22 C 0.513 3.487 23 N -0.856 5.856 24 O -0.537 6.537 25 C -0.189 4.189 26 C -0.194 4.194 27 H 0.255 0.745 28 H 0.056 0.944 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.400 0.600 39 H 0.397 0.603 40 H 0.091 0.909 41 H 0.039 0.961 42 H 0.035 0.965 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.208 -12.541 -4.343 17.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.148 4.148 3 Si 0.723 3.277 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.215 1.215 7 C -0.487 4.487 8 H 0.084 0.916 9 C 0.022 3.978 10 C -0.038 4.038 11 N -0.201 5.201 12 C -0.060 4.060 13 C -0.132 4.132 14 H 0.100 0.900 15 C -0.143 4.143 16 C -0.158 4.158 17 C -0.141 4.141 18 C -0.147 4.147 19 H 0.099 0.901 20 C -0.049 4.049 21 H 0.113 0.887 22 C 0.298 3.702 23 N -0.419 5.419 24 O -0.413 6.413 25 C -0.227 4.227 26 C -0.232 4.232 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.228 0.772 39 H 0.227 0.773 40 H 0.110 0.890 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 10.541 -12.090 -4.360 16.622 hybrid contribution 0.273 0.126 0.441 0.533 sum 10.814 -11.964 -3.919 16.596 Atomic orbital electron populations 1.69946 1.05718 1.25401 1.51446 1.25054 0.94911 0.99098 0.95753 0.86559 0.79833 0.83514 0.77843 1.21006 1.19915 1.21534 1.20621 0.92965 0.88336 1.46789 0.91611 1.18975 0.85858 0.92513 1.00421 1.22117 0.92216 0.97072 0.92389 1.65666 1.17180 1.34695 1.02534 1.22343 0.94648 0.99792 0.89180 1.22212 1.00753 0.95982 0.94230 0.90024 1.21469 0.99527 0.95669 0.97679 1.22935 0.98147 0.98389 0.96315 1.21769 0.97501 0.99304 0.95525 1.22407 1.00415 0.97157 0.94707 0.90066 1.21929 1.00517 0.91911 0.90546 0.88680 1.21064 0.84636 0.78383 0.86160 1.43954 1.13819 1.63674 1.20490 1.90746 1.21086 1.49373 1.80056 1.22636 1.08395 0.98145 0.93553 1.23193 1.03528 1.01191 0.95316 0.93439 0.92572 0.93789 0.93322 0.89050 0.91597 0.91460 0.91849 0.91717 0.91928 0.91129 0.77206 0.77331 0.89036 0.94216 0.94683 0.85058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.28 8.66 55.43 0.48 -24.80 16 2 C 0.05 1.42 5.29 -17.82 -0.09 1.33 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.45 -12.50 8.93 -34.44 -0.31 -12.80 16 8 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 9 C 0.02 0.60 1.93 -155.66 -0.30 0.30 16 10 C 0.09 2.04 3.31 -3.83 -0.01 2.02 16 11 N -0.48 -9.27 5.04 -225.80 -1.14 -10.41 16 12 C 0.07 1.22 5.31 -3.07 -0.02 1.20 16 13 C -0.11 -1.57 2.82 -90.34 -0.25 -1.82 16 14 H 0.08 1.13 8.13 -51.93 -0.42 0.70 16 15 C -0.11 -1.20 6.69 -26.51 -0.18 -1.38 16 16 C -0.12 -1.17 6.95 -23.34 -0.16 -1.33 16 17 C -0.10 -1.06 6.71 -25.90 -0.17 -1.24 16 18 C -0.13 -1.73 2.19 -90.26 -0.20 -1.93 16 19 H 0.08 1.30 7.68 -51.93 -0.40 0.90 16 20 C 0.06 0.95 3.66 -68.65 -0.25 0.70 16 21 H 0.10 1.25 7.97 -51.93 -0.41 0.84 16 22 C 0.51 8.17 5.54 -10.98 -0.06 8.11 16 23 N -0.86 -9.57 8.87 31.22 0.28 -9.30 16 24 O -0.54 -10.77 14.27 5.56 0.08 -10.69 16 25 C -0.19 -4.88 8.51 -26.73 -0.23 -5.11 16 26 C -0.19 -5.19 9.36 -26.73 -0.25 -5.44 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 28 H 0.06 1.33 6.79 -51.93 -0.35 0.98 16 29 H 0.04 1.06 6.12 -51.93 -0.32 0.74 16 30 H 0.05 0.94 6.83 -51.93 -0.35 0.59 16 31 H 0.09 1.80 8.14 -51.93 -0.42 1.37 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.40 3.22 8.70 -40.82 -0.36 2.86 16 39 H 0.40 3.96 8.93 -40.82 -0.36 3.60 16 40 H 0.09 2.56 6.98 -51.93 -0.36 2.20 16 41 H 0.04 0.95 7.30 -51.93 -0.38 0.57 16 42 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.13 3.81 5.59 -51.93 -0.29 3.52 16 LS Contribution 327.18 15.07 4.93 4.93 Total: -1.00 -31.65 327.18 -9.82 -41.46 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -6.94 Total: 9.63 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -2.49 Total: -17.38 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -0.38 Total: -44.50 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.08 Total: -10.69 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.65 -9.82 -41.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602816568.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.406 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds