Wall clock time and date at job start Tue Mar 31 2020 00:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99987 * 2 1 4 4 H 1.48499 * 109.46902 * 90.00519 * 3 2 1 5 5 H 1.48500 * 109.46875 * 210.00356 * 3 2 1 6 6 H 1.48503 * 109.47169 * 330.00391 * 3 2 1 7 7 C 1.37870 * 119.99929 * 180.28061 * 2 1 3 8 8 H 1.08001 * 120.00335 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00142 * 359.97438 * 7 2 1 10 10 C 1.53002 * 115.55050 * 188.09933 * 9 7 2 11 11 N 1.46893 * 109.47143 * 302.92990 * 10 9 7 12 12 C 1.50106 * 111.00367 * 292.83732 * 11 10 9 13 13 C 1.50918 * 102.23396 * 213.14350 * 12 11 10 14 14 H 1.08995 * 109.98939 * 291.16915 * 13 12 11 15 15 C 1.50303 * 125.70057 * 155.99228 * 13 12 11 16 16 C 1.55936 * 104.16451 * 214.80432 * 15 13 12 17 17 C 1.56392 * 105.79459 * 7.51074 * 16 15 13 18 18 C 1.51019 * 101.60069 * 25.01223 * 17 16 15 19 19 H 1.08994 * 110.05274 * 69.39858 * 18 17 16 20 20 C 1.49625 * 111.00163 * 173.01917 * 11 10 9 21 21 H 1.08992 * 110.37098 * 233.50822 * 20 11 10 22 22 C 1.50705 * 110.36528 * 355.83513 * 20 11 10 23 23 N 1.34776 * 119.99482 * 233.27609 * 22 20 11 24 24 O 1.21277 * 120.00342 * 53.26838 * 22 20 11 25 25 C 1.53005 * 117.49853 * 42.39029 * 9 7 2 26 26 C 1.52998 * 117.49752 * 333.76815 * 9 7 2 27 27 H 0.97006 * 120.00151 * 359.72049 * 1 2 3 28 28 H 1.09004 * 109.47194 * 62.93210 * 10 9 7 29 29 H 1.08997 * 109.47056 * 182.93057 * 10 9 7 30 30 H 1.09006 * 110.84749 * 331.32739 * 12 11 10 31 31 H 1.08998 * 110.85034 * 94.75110 * 12 11 10 32 32 H 1.09005 * 110.49559 * 333.46811 * 15 13 12 33 33 H 1.09000 * 110.49714 * 96.13201 * 15 13 12 34 34 H 1.08991 * 110.19155 * 126.59686 * 16 15 13 35 35 H 1.09005 * 110.18197 * 248.35959 * 16 15 13 36 36 H 1.09004 * 110.99894 * 143.09016 * 17 16 15 37 37 H 1.09000 * 111.00524 * 266.89213 * 17 16 15 38 38 H 0.96998 * 120.00302 * 359.97438 * 23 22 20 39 39 H 0.97009 * 119.99965 * 180.02562 * 23 22 20 40 40 H 1.08992 * 117.49811 * 0.02562 * 25 9 7 41 41 H 1.09003 * 117.49305 * 145.02632 * 25 9 7 42 42 H 1.09002 * 117.50378 * 214.98092 * 26 9 7 43 43 H 1.09003 * 117.49813 * 0.02562 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4465 2.6528 -0.7000 7 6 2.0045 -1.1940 -0.0058 8 1 3.0845 -1.1941 -0.0063 9 6 1.2510 -2.4991 -0.0117 10 6 2.1046 -3.7548 0.1766 11 7 3.1372 -3.8059 -0.8669 12 6 2.5243 -4.0192 -2.2204 13 6 3.5774 -4.8414 -2.9223 14 1 4.4634 -4.2336 -3.1060 15 6 3.3389 -5.7659 -4.0831 16 6 4.3436 -6.9358 -3.8519 17 6 4.9686 -6.6874 -2.4400 18 6 3.8883 -5.8732 -1.7686 19 1 3.0140 -6.4960 -1.5797 20 6 4.0959 -4.9274 -0.6182 21 1 5.1207 -4.5563 -0.6122 22 6 3.7766 -5.6107 0.6866 23 7 4.7382 -5.7681 1.6177 24 8 2.6544 -6.0188 0.8987 25 6 0.0293 -2.6055 -0.9267 26 6 -0.1563 -2.5050 0.5887 27 1 -0.4851 0.8401 0.0041 28 1 2.5800 -3.7273 1.1572 29 1 1.4712 -4.6389 0.1045 30 1 1.5892 -4.5736 -2.1397 31 1 2.3669 -3.0683 -2.7293 32 1 2.3135 -6.1357 -4.0720 33 1 3.5527 -5.2596 -5.0244 34 1 3.8189 -7.8910 -3.8682 35 1 5.1205 -6.9209 -4.6163 36 1 5.1324 -7.6281 -1.9143 37 1 5.8955 -6.1192 -2.5176 38 1 5.6358 -5.4420 1.4479 39 1 4.5328 -6.2083 2.4574 40 1 -0.2291 -1.7317 -1.5247 41 1 -0.1663 -3.5702 -1.3947 42 1 -0.4742 -3.4036 1.1176 43 1 -0.5373 -1.5648 0.9875 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602816568.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:40 Heat of formation + Delta-G solvation = -5.727804 kcal Electronic energy + Delta-G solvation = -23274.397331 eV Core-core repulsion = 20126.937797 eV Total energy + Delta-G solvation = -3147.459534 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.17504 -39.65112 -38.62708 -35.92583 -34.70259 -33.53910 -31.40826 -30.58050 -27.77911 -27.58922 -25.96192 -23.51225 -22.69156 -21.79823 -21.14348 -20.76519 -20.44040 -18.36951 -18.03135 -17.64167 -17.07523 -16.65961 -15.95344 -15.73467 -15.60829 -15.41445 -15.04219 -14.65843 -14.23221 -14.13544 -13.71588 -13.28721 -12.95524 -12.92857 -12.65627 -12.50472 -12.39808 -12.23606 -12.03791 -11.97546 -11.93801 -11.62543 -11.39087 -11.30810 -11.18005 -10.80424 -10.74451 -10.59656 -10.26938 -10.01933 -9.12448 -7.90576 -6.05305 1.44721 1.45597 1.52841 1.56873 2.47699 2.57450 2.92387 3.01835 3.16593 3.78272 3.84652 3.97536 4.05847 4.10658 4.29190 4.33838 4.43321 4.46260 4.57208 4.65299 4.71193 4.76313 4.79714 4.85528 4.92058 4.96075 5.07581 5.12986 5.17403 5.21629 5.25128 5.27948 5.42122 5.48047 5.54353 5.64142 5.88918 5.93377 5.95670 6.06876 6.28001 6.45741 6.58776 6.98167 7.34582 7.52173 9.00000 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018874 B = 0.005926 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.192009 B = 4724.028483 C = 5114.579725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.004 3.996 3 Si 0.961 3.039 4 H -0.279 1.279 5 H -0.266 1.266 6 H -0.288 1.288 7 C -0.467 4.467 8 H 0.063 0.937 9 C 0.020 3.980 10 C 0.114 3.886 11 N -0.492 5.492 12 C 0.068 3.932 13 C -0.106 4.106 14 H 0.092 0.908 15 C -0.106 4.106 16 C -0.114 4.114 17 C -0.095 4.095 18 C -0.117 4.117 19 H 0.052 0.948 20 C 0.060 3.940 21 H 0.127 0.873 22 C 0.507 3.493 23 N -0.830 5.830 24 O -0.586 6.586 25 C -0.176 4.176 26 C -0.206 4.206 27 H 0.255 0.745 28 H 0.044 0.956 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.419 0.581 39 H 0.406 0.594 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.042 0.958 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.323 -13.176 -5.143 20.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.787 3.213 4 H -0.205 1.205 5 H -0.191 1.191 6 H -0.214 1.214 7 C -0.505 4.505 8 H 0.081 0.919 9 C 0.019 3.981 10 C -0.014 4.014 11 N -0.216 5.216 12 C -0.059 4.059 13 C -0.125 4.125 14 H 0.110 0.890 15 C -0.144 4.144 16 C -0.151 4.151 17 C -0.133 4.133 18 C -0.137 4.137 19 H 0.070 0.930 20 C -0.050 4.050 21 H 0.144 0.856 22 C 0.292 3.708 23 N -0.395 5.395 24 O -0.466 6.466 25 C -0.214 4.214 26 C -0.244 4.244 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.250 0.750 39 H 0.237 0.763 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 13.718 -12.734 -5.144 19.411 hybrid contribution -0.704 0.318 0.722 1.058 sum 13.013 -12.416 -4.422 18.522 Atomic orbital electron populations 1.70105 1.06992 1.26073 1.51603 1.25818 0.95756 1.02409 0.95302 0.85509 0.78706 0.79161 0.77921 1.20491 1.19061 1.21416 1.20820 0.92961 0.89328 1.47361 0.91863 1.19164 0.85896 0.93691 0.99362 1.21678 0.92301 0.94517 0.92946 1.65508 1.16391 1.37698 1.02036 1.22210 0.95318 0.99123 0.89283 1.22150 0.99140 0.95869 0.95384 0.88981 1.21525 0.99746 0.95923 0.97203 1.22917 0.98154 0.97481 0.96581 1.21806 0.96932 0.99364 0.95191 1.22347 1.00922 0.96732 0.93697 0.92962 1.22079 1.00448 0.91336 0.91161 0.85552 1.21190 0.84548 0.78103 0.86960 1.43717 1.13889 1.62147 1.19722 1.90732 1.23245 1.51657 1.80958 1.22416 1.08719 0.97614 0.92698 1.23092 1.05015 1.00423 0.95871 0.93541 0.93754 0.95573 0.95505 0.91351 0.92734 0.89994 0.91460 0.89352 0.90830 0.89077 0.74980 0.76289 0.91398 0.92971 0.93985 0.87132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.01 8.66 21.44 0.19 -52.82 16 2 C 0.00 0.25 5.29 84.65 0.45 0.70 16 3 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 6 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 7 C -0.47 -26.35 8.93 25.60 0.23 -26.12 16 8 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 9 C 0.02 1.05 1.93 -52.93 -0.10 0.95 16 10 C 0.11 5.33 3.31 86.31 0.29 5.61 16 11 N -0.49 -19.21 5.04 -868.29 -4.38 -23.58 16 12 C 0.07 2.51 5.31 85.00 0.45 2.96 16 13 C -0.11 -2.82 2.82 -10.61 -0.03 -2.85 16 14 H 0.09 2.29 8.13 -2.39 -0.02 2.27 16 15 C -0.11 -2.21 6.69 30.74 0.21 -2.00 16 16 C -0.11 -1.81 6.95 32.79 0.23 -1.58 16 17 C -0.10 -1.61 6.71 31.13 0.21 -1.40 16 18 C -0.12 -2.99 2.19 -10.56 -0.02 -3.01 16 19 H 0.05 1.66 7.68 -2.39 -0.02 1.64 16 20 C 0.06 1.75 3.66 42.79 0.16 1.91 16 21 H 0.13 2.89 7.97 -2.39 -0.02 2.87 16 22 C 0.51 15.69 5.54 87.66 0.49 16.18 16 23 N -0.83 -16.77 8.87 -173.53 -1.54 -18.31 16 24 O -0.59 -23.89 14.27 -3.02 -0.04 -23.94 16 25 C -0.18 -9.46 8.51 30.60 0.26 -9.20 16 26 C -0.21 -11.41 9.36 30.59 0.29 -11.13 16 27 H 0.25 14.28 8.31 -92.70 -0.77 13.51 16 28 H 0.04 2.14 6.79 -2.38 -0.02 2.12 16 29 H 0.03 1.32 6.12 -2.39 -0.01 1.30 16 30 H 0.03 1.09 6.83 -2.38 -0.02 1.07 16 31 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.42 5.36 8.70 -92.71 -0.81 4.55 16 39 H 0.41 7.31 8.93 -92.70 -0.83 6.48 16 40 H 0.07 3.95 6.98 -2.39 -0.02 3.94 16 41 H 0.05 2.61 7.30 -2.39 -0.02 2.60 16 42 H 0.04 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.11 6.67 5.59 -2.39 -0.01 6.65 16 Total: -1.00 -70.95 327.18 -1.27 -72.23 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: -0.61 Total: 28.97 kcal Atomic # 6 Polarization: -32.08 SS G_CDS: 3.09 Total: -28.99 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: -5.73 Total: -94.72 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.04 Total: -23.94 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -70.95 -1.27 -72.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602816568.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.498 kcal (2) G-P(sol) polarization free energy of solvation -70.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds