Wall clock time and date at job start Tue Mar 31 2020 00:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53008 * 115.54755 * 179.91152 * 9 7 2 11 11 N 1.46899 * 109.46867 * 325.58217 * 10 9 7 12 12 C 1.48528 * 111.00317 * 285.40344 * 11 10 9 13 13 C 1.54322 * 104.67413 * 200.80998 * 12 11 10 14 14 H 1.09005 * 111.82062 * 262.43310 * 13 12 11 15 15 C 1.54159 * 109.65041 * 137.84310 * 13 12 11 16 16 C 1.54849 * 104.32163 * 223.31070 * 15 13 12 17 17 C 1.55755 * 102.31869 * 38.85151 * 16 15 13 18 18 C 1.54168 * 103.89244 * 320.67718 * 17 16 15 19 19 H 1.09000 * 112.51059 * 262.09913 * 18 17 16 20 20 C 1.48534 * 110.99806 * 169.99480 * 11 10 9 21 21 H 1.09002 * 110.39182 * 40.40077 * 20 11 10 22 22 C 1.50694 * 110.40111 * 278.11129 * 20 11 10 23 23 N 1.34781 * 120.00011 * 161.45272 * 22 20 11 24 24 O 1.21277 * 119.99929 * 341.45127 * 22 20 11 25 25 C 1.52994 * 117.50165 * 34.20801 * 9 7 2 26 26 C 1.52995 * 117.50337 * 325.58228 * 9 7 2 27 27 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46862 * 85.58011 * 10 9 7 29 29 H 1.08996 * 109.47206 * 205.58296 * 10 9 7 30 30 H 1.08998 * 110.39471 * 319.60839 * 12 11 10 31 31 H 1.09001 * 110.39715 * 82.01162 * 12 11 10 32 32 H 1.08995 * 110.46044 * 342.01838 * 15 13 12 33 33 H 1.08999 * 110.46302 * 104.47559 * 15 13 12 34 34 H 1.08990 * 110.75866 * 156.49620 * 16 15 13 35 35 H 1.09003 * 110.75846 * 279.87158 * 16 15 13 36 36 H 1.09007 * 109.61287 * 202.61526 * 17 16 15 37 37 H 1.08996 * 111.72816 * 79.76999 * 17 16 15 38 38 H 0.97006 * 119.99888 * 359.97438 * 23 22 20 39 39 H 0.96999 * 119.99931 * 179.97438 * 23 22 20 40 40 H 1.09004 * 117.49880 * 359.97438 * 25 9 7 41 41 H 1.09004 * 117.50360 * 145.01908 * 25 9 7 42 42 H 1.09003 * 117.50188 * 214.98344 * 26 9 7 43 43 H 1.09005 * 117.49622 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.1166 -3.7609 -0.0010 11 7 3.3350 -3.5179 -0.7848 12 6 3.0394 -3.5130 -2.2404 13 6 4.3991 -3.7882 -2.9164 14 1 4.8807 -2.8681 -3.2473 15 6 4.2086 -4.7843 -4.0774 16 6 5.3933 -5.7711 -3.9339 17 6 5.4983 -5.9418 -2.3892 18 6 5.2372 -4.5245 -1.8416 19 1 6.1587 -3.9908 -1.6087 20 6 4.3079 -4.6272 -0.6140 21 1 3.7918 -5.5873 -0.6075 22 6 5.0934 -4.4456 0.6591 23 7 5.7480 -5.4912 1.2020 24 8 5.1365 -3.3586 1.1952 25 6 -0.0738 -2.5499 -0.7629 26 6 -0.0720 -2.5511 0.7671 27 1 -0.4850 0.8401 0.0004 28 1 2.3884 -4.0162 1.0233 29 1 1.5574 -4.5846 -0.4446 30 1 2.3267 -4.3003 -2.4859 31 1 2.6530 -2.5407 -2.5463 32 1 3.2597 -5.3108 -3.9759 33 1 4.2555 -4.2664 -5.0354 34 1 5.1606 -6.7253 -4.4062 35 1 6.3048 -5.3439 -4.3520 36 1 6.5025 -6.2733 -2.1252 37 1 4.7531 -6.6404 -2.0089 38 1 5.7132 -6.3607 0.7734 39 1 6.2539 -5.3742 2.0213 40 1 -0.4007 -1.6393 -1.2649 41 1 -0.3292 -3.4823 -1.2666 42 1 -0.3261 -3.4841 1.2700 43 1 -0.3973 -1.6413 1.2718 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602816574.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:46 Heat of formation + Delta-G solvation = 0.568884 kcal Electronic energy + Delta-G solvation = -23206.205202 eV Core-core repulsion = 20059.018713 eV Total energy + Delta-G solvation = -3147.186489 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.33442 -38.17543 -36.72933 -34.46573 -33.36113 -31.36831 -30.42558 -29.25942 -26.16140 -25.53180 -24.49559 -22.10457 -20.82598 -20.57424 -19.81008 -19.16688 -18.62681 -17.34578 -16.59524 -15.82246 -15.48909 -15.11209 -14.66740 -14.21027 -14.01280 -13.89155 -13.49366 -13.20331 -12.86498 -12.53216 -12.14317 -11.98985 -11.34303 -11.15154 -11.06873 -10.93158 -10.85741 -10.77980 -10.64172 -10.42848 -10.32140 -10.31093 -9.92033 -9.84425 -9.44932 -9.42020 -9.26017 -8.62446 -8.18524 -7.85205 -7.62691 -5.73217 -3.72716 3.01360 3.44580 3.50782 3.60289 3.66086 4.42189 4.45801 4.62046 4.67406 4.88838 5.18819 5.23205 5.27310 5.29984 5.37704 5.51309 5.57576 5.62227 5.68031 5.80719 5.87894 5.95136 5.99530 6.09443 6.20012 6.25841 6.34134 6.35416 6.51474 6.59008 6.74625 6.81698 6.98678 7.11767 7.26497 7.38420 7.44702 7.64341 7.74388 7.99788 8.28820 8.35639 8.65435 8.80584 9.32226 9.81223 11.24174 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017414 B = 0.006233 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.471585 B = 4491.118980 C = 4759.067501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.047 3.953 3 Si 0.893 3.107 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.438 4.438 8 H 0.079 0.921 9 C 0.028 3.972 10 C 0.094 3.906 11 N -0.456 5.456 12 C 0.051 3.949 13 C -0.093 4.093 14 H 0.087 0.913 15 C -0.120 4.120 16 C -0.122 4.122 17 C -0.121 4.121 18 C -0.077 4.077 19 H 0.086 0.914 20 C 0.042 3.958 21 H 0.062 0.938 22 C 0.519 3.481 23 N -0.866 5.866 24 O -0.502 6.502 25 C -0.192 4.192 26 C -0.191 4.191 27 H 0.253 0.747 28 H 0.057 0.943 29 H 0.014 0.986 30 H 0.037 0.963 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.394 0.606 39 H 0.397 0.603 40 H 0.110 0.890 41 H 0.035 0.965 42 H 0.037 0.963 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.356 -14.947 -5.933 19.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.151 4.151 3 Si 0.722 3.278 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.198 1.198 7 C -0.476 4.476 8 H 0.097 0.903 9 C 0.027 3.973 10 C -0.033 4.033 11 N -0.179 5.179 12 C -0.077 4.077 13 C -0.112 4.112 14 H 0.105 0.895 15 C -0.158 4.158 16 C -0.160 4.160 17 C -0.159 4.159 18 C -0.097 4.097 19 H 0.104 0.896 20 C -0.070 4.070 21 H 0.079 0.921 22 C 0.302 3.698 23 N -0.432 5.432 24 O -0.373 6.373 25 C -0.230 4.230 26 C -0.230 4.230 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.032 0.968 30 H 0.055 0.945 31 H 0.114 0.886 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.222 0.778 39 H 0.227 0.773 40 H 0.128 0.872 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.315 -13.455 -5.515 17.828 hybrid contribution 0.022 -0.378 0.031 0.380 sum 10.337 -13.833 -5.485 18.119 Atomic orbital electron populations 1.70032 1.05727 1.25420 1.52063 1.25050 0.94866 0.99110 0.96100 0.86559 0.80031 0.83461 0.77777 1.21094 1.21771 1.19793 1.20767 0.93815 0.87618 1.45424 0.90254 1.18903 0.85180 0.92702 1.00475 1.21792 0.89161 0.96398 0.95978 1.65142 1.10775 1.36687 1.05284 1.23176 0.94327 1.02442 0.87752 1.22539 0.96268 0.98293 0.94059 0.89490 1.22492 0.98395 0.96645 0.98263 1.22641 0.98710 0.99065 0.95561 1.22695 1.01353 0.95951 0.95865 1.22395 0.98152 0.95945 0.93160 0.89552 1.22795 0.95463 0.95866 0.92901 0.92075 1.20531 0.79336 0.84113 0.85839 1.43937 1.55989 1.12825 1.30465 1.90814 1.59808 1.25145 1.61557 1.22887 1.06503 0.99308 0.94324 1.22808 1.06163 0.99545 0.94449 0.93648 0.92482 0.96838 0.94497 0.88636 0.91450 0.91636 0.91850 0.91376 0.91804 0.91240 0.77826 0.77316 0.87236 0.94685 0.94500 0.87140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.86 8.59 55.43 0.48 -25.39 16 2 C 0.05 1.36 5.28 -17.82 -0.09 1.26 16 3 Si 0.89 22.69 29.54 -169.99 -5.02 17.67 16 4 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.27 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.44 -12.52 8.70 -34.44 -0.30 -12.82 16 8 H 0.08 2.37 7.22 -52.48 -0.38 2.00 16 9 C 0.03 0.72 2.12 -155.66 -0.33 0.39 16 10 C 0.09 2.06 4.90 -3.82 -0.02 2.04 16 11 N -0.46 -9.05 3.45 -223.63 -0.77 -9.82 16 12 C 0.05 0.89 5.68 -2.23 -0.01 0.88 16 13 C -0.09 -1.28 3.88 -88.32 -0.34 -1.63 16 14 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 15 C -0.12 -1.31 6.37 -25.15 -0.16 -1.47 16 16 C -0.12 -1.10 6.95 -24.29 -0.17 -1.27 16 17 C -0.12 -1.13 6.41 -24.65 -0.16 -1.29 16 18 C -0.08 -1.00 3.43 -88.32 -0.30 -1.30 16 19 H 0.09 1.19 7.90 -51.93 -0.41 0.78 16 20 C 0.04 0.65 2.20 -67.27 -0.15 0.50 16 21 H 0.06 0.83 7.04 -51.93 -0.37 0.47 16 22 C 0.52 8.51 6.88 -10.99 -0.08 8.43 16 23 N -0.87 -9.33 8.87 31.22 0.28 -9.06 16 24 O -0.50 -11.15 17.43 5.56 0.10 -11.05 16 25 C -0.19 -4.89 9.31 -26.74 -0.25 -5.14 16 26 C -0.19 -4.98 9.38 -26.73 -0.25 -5.23 16 27 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.06 1.29 7.77 -51.93 -0.40 0.88 16 29 H 0.01 0.27 7.53 -51.93 -0.39 -0.12 16 30 H 0.04 0.62 6.86 -51.93 -0.36 0.26 16 31 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 32 H 0.07 0.75 7.25 -51.93 -0.38 0.37 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.61 7.18 -51.93 -0.37 0.24 16 38 H 0.39 2.90 8.83 -40.82 -0.36 2.54 16 39 H 0.40 3.84 8.93 -40.82 -0.36 3.47 16 40 H 0.11 3.07 6.27 -51.93 -0.33 2.75 16 41 H 0.03 0.81 8.05 -51.93 -0.42 0.39 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.11 3.17 6.29 -51.93 -0.33 2.85 16 LS Contribution 333.10 15.07 5.02 5.02 Total: -1.00 -33.12 333.10 -9.48 -42.60 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.94 Total: 6.66 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -2.61 Total: -16.63 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: -0.02 Total: -44.26 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.10 Total: -11.05 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.12 -9.48 -42.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602816574.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.165 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds