Wall clock time and date at job start Tue Mar 31 2020 00:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 C 1.53008 * 115.54755 * 179.91152 * 9 7 2 11 11 N 1.46899 * 109.46867 * 325.58217 * 10 9 7 12 12 C 1.48528 * 111.00317 * 285.40344 * 11 10 9 13 13 C 1.54322 * 104.67413 * 200.80998 * 12 11 10 14 14 H 1.09005 * 111.82062 * 262.43310 * 13 12 11 15 15 C 1.54159 * 109.65041 * 137.84310 * 13 12 11 16 16 C 1.54849 * 104.32163 * 223.31070 * 15 13 12 17 17 C 1.55755 * 102.31869 * 38.85151 * 16 15 13 18 18 C 1.54168 * 103.89244 * 320.67718 * 17 16 15 19 19 H 1.09000 * 112.51059 * 262.09913 * 18 17 16 20 20 C 1.48534 * 110.99806 * 169.99480 * 11 10 9 21 21 H 1.09002 * 110.39182 * 40.40077 * 20 11 10 22 22 C 1.50694 * 110.40111 * 278.11129 * 20 11 10 23 23 N 1.34781 * 120.00011 * 161.45272 * 22 20 11 24 24 O 1.21277 * 119.99929 * 341.45127 * 22 20 11 25 25 C 1.52994 * 117.50165 * 34.20801 * 9 7 2 26 26 C 1.52995 * 117.50337 * 325.58228 * 9 7 2 27 27 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46862 * 85.58011 * 10 9 7 29 29 H 1.08996 * 109.47206 * 205.58296 * 10 9 7 30 30 H 1.08998 * 110.39471 * 319.60839 * 12 11 10 31 31 H 1.09001 * 110.39715 * 82.01162 * 12 11 10 32 32 H 1.08995 * 110.46044 * 342.01838 * 15 13 12 33 33 H 1.08999 * 110.46302 * 104.47559 * 15 13 12 34 34 H 1.08990 * 110.75866 * 156.49620 * 16 15 13 35 35 H 1.09003 * 110.75846 * 279.87158 * 16 15 13 36 36 H 1.09007 * 109.61287 * 202.61526 * 17 16 15 37 37 H 1.08996 * 111.72816 * 79.76999 * 17 16 15 38 38 H 0.97006 * 119.99888 * 359.97438 * 23 22 20 39 39 H 0.96999 * 119.99931 * 179.97438 * 23 22 20 40 40 H 1.09004 * 117.49880 * 359.97438 * 25 9 7 41 41 H 1.09004 * 117.50360 * 145.01908 * 25 9 7 42 42 H 1.09003 * 117.50188 * 214.98344 * 26 9 7 43 43 H 1.09005 * 117.49622 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 6 2.1166 -3.7609 -0.0010 11 7 3.3350 -3.5179 -0.7848 12 6 3.0394 -3.5130 -2.2404 13 6 4.3991 -3.7882 -2.9164 14 1 4.8807 -2.8681 -3.2473 15 6 4.2086 -4.7843 -4.0774 16 6 5.3933 -5.7711 -3.9339 17 6 5.4983 -5.9418 -2.3892 18 6 5.2372 -4.5245 -1.8416 19 1 6.1587 -3.9908 -1.6087 20 6 4.3079 -4.6272 -0.6140 21 1 3.7918 -5.5873 -0.6075 22 6 5.0934 -4.4456 0.6591 23 7 5.7480 -5.4912 1.2020 24 8 5.1365 -3.3586 1.1952 25 6 -0.0738 -2.5499 -0.7629 26 6 -0.0720 -2.5511 0.7671 27 1 -0.4850 0.8401 0.0004 28 1 2.3884 -4.0162 1.0233 29 1 1.5574 -4.5846 -0.4446 30 1 2.3267 -4.3003 -2.4859 31 1 2.6530 -2.5407 -2.5463 32 1 3.2597 -5.3108 -3.9759 33 1 4.2555 -4.2664 -5.0354 34 1 5.1606 -6.7253 -4.4062 35 1 6.3048 -5.3439 -4.3520 36 1 6.5025 -6.2733 -2.1252 37 1 4.7531 -6.6404 -2.0089 38 1 5.7132 -6.3607 0.7734 39 1 6.2539 -5.3742 2.0213 40 1 -0.4007 -1.6393 -1.2649 41 1 -0.3292 -3.4823 -1.2666 42 1 -0.3261 -3.4841 1.2700 43 1 -0.3973 -1.6413 1.2718 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602816574.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:45 Heat of formation + Delta-G solvation = -22.687202 kcal Electronic energy + Delta-G solvation = -23207.213662 eV Core-core repulsion = 20059.018713 eV Total energy + Delta-G solvation = -3148.194949 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.55133 -39.43852 -38.55171 -35.84603 -34.55665 -33.50612 -31.49348 -30.52728 -27.71145 -27.07156 -26.08958 -23.42746 -22.64148 -21.70225 -21.11016 -20.70206 -20.07676 -18.49095 -17.84203 -17.73121 -16.91495 -16.50644 -16.16515 -15.53108 -15.45112 -15.24804 -15.03561 -14.60036 -14.30859 -14.14591 -13.54419 -13.11032 -13.00395 -12.95410 -12.71488 -12.50886 -12.17918 -12.06874 -11.93437 -11.85004 -11.83528 -11.49340 -11.42790 -11.42380 -11.30508 -10.73690 -10.72263 -10.54908 -10.24702 -9.96494 -9.07403 -7.93399 -5.98072 1.37812 1.39422 1.52414 1.75247 2.47797 2.54065 3.07087 3.27163 3.49847 3.61578 3.81719 3.93415 4.15629 4.19234 4.30491 4.39020 4.46468 4.54469 4.57032 4.62093 4.63057 4.72899 4.80040 4.88083 4.94642 5.01983 5.08351 5.16011 5.23152 5.29287 5.30338 5.37286 5.41963 5.47254 5.57518 5.68702 5.99282 6.01106 6.11249 6.22834 6.28146 6.63193 6.68314 7.06550 7.52980 7.57274 9.01336 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017414 B = 0.006233 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.471585 B = 4491.118980 C = 4759.067501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.005 3.995 3 Si 0.947 3.053 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.451 4.451 8 H 0.057 0.943 9 C 0.017 3.983 10 C 0.108 3.892 11 N -0.491 5.491 12 C 0.054 3.946 13 C -0.092 4.092 14 H 0.072 0.928 15 C -0.115 4.115 16 C -0.115 4.115 17 C -0.112 4.112 18 C -0.072 4.072 19 H 0.074 0.926 20 C 0.044 3.956 21 H 0.090 0.910 22 C 0.516 3.484 23 N -0.836 5.836 24 O -0.573 6.573 25 C -0.181 4.181 26 C -0.196 4.196 27 H 0.253 0.747 28 H 0.044 0.956 29 H 0.033 0.967 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.416 0.584 39 H 0.406 0.594 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.666 -17.918 -7.042 22.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.774 3.226 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.208 1.208 7 C -0.489 4.489 8 H 0.075 0.925 9 C 0.016 3.984 10 C -0.021 4.021 11 N -0.215 5.215 12 C -0.073 4.073 13 C -0.112 4.112 14 H 0.090 0.910 15 C -0.153 4.153 16 C -0.152 4.152 17 C -0.149 4.149 18 C -0.091 4.091 19 H 0.092 0.908 20 C -0.068 4.068 21 H 0.108 0.892 22 C 0.300 3.700 23 N -0.402 5.402 24 O -0.450 6.450 25 C -0.218 4.218 26 C -0.235 4.235 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.247 0.753 39 H 0.237 0.763 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.644 -16.498 -6.637 21.257 hybrid contribution -0.368 0.537 0.400 0.764 sum 11.277 -15.961 -6.238 20.514 Atomic orbital electron populations 1.70164 1.06407 1.25791 1.52459 1.25649 0.95688 1.01695 0.96195 0.85725 0.78448 0.80472 0.77923 1.20249 1.21057 1.20811 1.20845 0.92986 0.89498 1.45599 0.92466 1.19044 0.85580 0.93557 1.00201 1.21522 0.89785 0.94736 0.96014 1.64934 1.10608 1.39799 1.06131 1.23084 0.96649 1.00531 0.87081 1.22524 0.94149 0.98976 0.95509 0.90971 1.22457 0.99614 0.96307 0.96918 1.22633 0.97843 0.99372 0.95393 1.22694 1.03148 0.93241 0.95853 1.22407 0.96698 0.98410 0.91605 0.90758 1.22926 0.94926 0.95436 0.93545 0.89226 1.20809 0.79238 0.84004 0.85908 1.43622 1.53908 1.12516 1.30139 1.90792 1.62620 1.28050 1.63535 1.22700 1.06135 0.99205 0.93806 1.22704 1.06685 0.99311 0.94753 0.93789 0.93714 0.94857 0.93373 0.92810 0.91280 0.91101 0.89682 0.90798 0.89550 0.89819 0.75250 0.76304 0.90185 0.91908 0.91963 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.16 8.59 21.45 0.18 -53.98 16 2 C 0.00 0.27 5.28 84.66 0.45 0.72 16 3 Si 0.95 48.13 29.54 68.60 2.03 50.16 16 4 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 5 H -0.28 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.28 -14.70 7.11 99.48 0.71 -13.99 16 7 C -0.45 -26.76 8.70 25.60 0.22 -26.54 16 8 H 0.06 3.60 7.22 -2.91 -0.02 3.58 16 9 C 0.02 0.89 2.12 -52.93 -0.11 0.77 16 10 C 0.11 4.67 4.90 86.31 0.42 5.09 16 11 N -0.49 -19.59 3.45 -861.43 -2.97 -22.56 16 12 C 0.05 1.91 5.68 86.44 0.49 2.40 16 13 C -0.09 -2.48 3.88 -9.30 -0.04 -2.52 16 14 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 15 C -0.12 -2.19 6.37 31.62 0.20 -1.99 16 16 C -0.12 -1.56 6.95 32.18 0.22 -1.34 16 17 C -0.11 -1.58 6.41 31.94 0.20 -1.37 16 18 C -0.07 -1.70 3.43 -9.30 -0.03 -1.73 16 19 H 0.07 1.95 7.90 -2.39 -0.02 1.93 16 20 C 0.04 1.27 2.20 44.30 0.10 1.37 16 21 H 0.09 2.11 7.04 -2.39 -0.02 2.09 16 22 C 0.52 16.43 6.88 87.65 0.60 17.04 16 23 N -0.84 -15.86 8.87 -173.54 -1.54 -17.40 16 24 O -0.57 -26.06 17.43 -3.02 -0.05 -26.11 16 25 C -0.18 -9.24 9.31 30.59 0.28 -8.96 16 26 C -0.20 -10.31 9.38 30.59 0.29 -10.02 16 27 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 28 H 0.04 2.02 7.77 -2.39 -0.02 2.00 16 29 H 0.03 1.29 7.53 -2.39 -0.02 1.27 16 30 H 0.05 1.55 6.86 -2.39 -0.02 1.54 16 31 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.07 1.31 7.25 -2.39 -0.02 1.30 16 33 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.08 1.00 7.18 -2.39 -0.02 0.98 16 38 H 0.42 4.42 8.83 -92.70 -0.82 3.60 16 39 H 0.41 6.94 8.93 -92.71 -0.83 6.12 16 40 H 0.08 4.60 6.27 -2.38 -0.01 4.59 16 41 H 0.06 2.82 8.05 -2.38 -0.02 2.80 16 42 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 43 H 0.08 4.68 6.29 -2.38 -0.02 4.67 16 Total: -1.00 -76.16 333.10 0.32 -75.84 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -0.63 Total: 21.14 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: 3.30 Total: -27.08 kcal Atomic # 7 Polarization: -89.61 SS G_CDS: -4.33 Total: -93.94 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.05 Total: -26.11 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.03 Total: 50.16 kcal Total: -76.16 0.32 -75.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602816574.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.149 kcal (2) G-P(sol) polarization free energy of solvation -76.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds