Wall clock time and date at job start Tue Mar 31 2020 00:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00246 * 2 1 4 4 H 1.48496 * 109.47179 * 272.91144 * 3 2 1 5 5 H 1.48493 * 109.47131 * 32.91350 * 3 2 1 6 6 H 1.48504 * 109.46895 * 152.91239 * 3 2 1 7 7 C 1.38818 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99247 * 339.35633 * 7 2 1 9 9 N 1.36934 * 120.00271 * 159.36067 * 7 2 1 10 10 C 1.46922 * 120.62798 * 332.62488 * 9 7 2 11 11 C 1.53190 * 108.77553 * 233.58428 * 10 9 7 12 12 C 1.53044 * 109.31338 * 305.37070 * 11 10 9 13 13 N 1.46506 * 109.45953 * 181.38361 * 12 11 10 14 14 C 1.34768 * 120.00005 * 154.97219 * 13 12 11 15 15 O 1.21284 * 120.00235 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00026 * 179.97438 * 14 13 12 17 17 H 1.09002 * 109.63806 * 300.41849 * 16 14 13 18 18 C 1.53023 * 109.81540 * 60.94915 * 16 14 13 19 19 C 1.50068 * 110.14609 * 169.22308 * 18 16 14 20 20 C 1.29446 * 124.07589 * 342.86662 * 19 18 16 21 21 C 1.50066 * 124.07707 * 0.47073 * 20 19 18 22 22 C 1.53024 * 110.14827 * 342.87013 * 21 20 19 23 23 C 1.53045 * 109.52824 * 61.36940 * 12 11 10 24 24 C 1.46930 * 120.62893 * 152.60351 * 9 7 2 25 25 H 0.97005 * 119.99847 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.58561 * 113.80293 * 10 9 7 27 27 H 1.08997 * 109.58844 * 353.37536 * 10 9 7 28 28 H 1.08994 * 109.50156 * 185.41854 * 11 10 9 29 29 H 1.09006 * 109.49846 * 65.31695 * 11 10 9 30 30 H 1.09001 * 109.45699 * 301.35370 * 12 11 10 31 31 H 0.97001 * 119.99849 * 334.96799 * 13 12 11 32 32 H 1.08995 * 109.35924 * 289.42804 * 18 16 14 33 33 H 1.09002 * 109.35886 * 49.15771 * 18 16 14 34 34 H 1.08001 * 117.96266 * 162.89361 * 19 18 16 35 35 H 1.08002 * 117.96154 * 180.48774 * 20 19 18 36 36 H 1.08994 * 109.36274 * 222.66037 * 21 20 19 37 37 H 1.09006 * 109.35566 * 103.07321 * 21 20 19 38 38 H 1.09000 * 109.64733 * 169.11975 * 22 21 20 39 39 H 1.09002 * 109.63767 * 289.53898 * 22 21 20 40 40 H 1.09002 * 109.49775 * 58.57923 * 23 12 11 41 41 H 1.08997 * 109.49493 * 178.67493 * 23 12 11 42 42 H 1.08996 * 109.58637 * 246.20072 * 24 9 7 43 43 H 1.09007 * 109.58514 * 6.48285 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4361 2.0819 -1.3982 5 1 1.4799 2.6340 0.7607 6 1 3.5772 1.4230 0.6376 7 6 2.0102 -1.2022 -0.0005 8 1 1.5221 -2.1076 0.3289 9 7 3.3136 -1.2401 -0.4185 10 6 3.8175 -0.2583 -1.3885 11 6 4.4627 -1.0075 -2.5586 12 6 5.5293 -1.9642 -2.0206 13 7 6.1714 -2.6584 -3.1396 14 6 7.4219 -3.1423 -3.0040 15 8 8.0156 -3.0035 -1.9556 16 6 8.0822 -3.8569 -4.1549 17 1 7.4883 -4.7268 -4.4352 18 6 8.2051 -2.9106 -5.3512 19 6 9.0872 -3.5182 -6.4023 20 6 9.8990 -4.5033 -6.1871 21 6 10.0642 -5.1819 -4.8589 22 6 9.4906 -4.3049 -3.7439 23 6 4.8751 -2.9899 -1.0921 24 6 4.2349 -2.2632 0.0948 25 1 -0.4850 0.8401 0.0004 26 1 4.5599 0.3804 -0.9098 27 1 2.9910 0.3502 -1.7554 28 1 4.9254 -0.2919 -3.2381 29 1 3.7002 -1.5756 -3.0917 30 1 6.2782 -1.3984 -1.4664 31 1 5.6965 -2.7698 -3.9780 32 1 7.2159 -2.7285 -5.7709 33 1 8.6375 -1.9658 -5.0216 34 1 9.0422 -3.1078 -7.4003 35 1 10.4947 -4.8586 -7.0149 36 1 11.1236 -5.3572 -4.6719 37 1 9.5391 -6.1371 -4.8735 38 1 9.4374 -4.8775 -2.8179 39 1 10.1283 -3.4327 -3.5992 40 1 4.1086 -3.5390 -1.6391 41 1 5.6313 -3.6853 -0.7278 42 1 5.0112 -1.7880 0.6944 43 1 3.6841 -2.9760 0.7085 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609328626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:06 Heat of formation + Delta-G solvation = -14.785394 kcal Electronic energy + Delta-G solvation = -22070.597474 eV Core-core repulsion = 18922.745173 eV Total energy + Delta-G solvation = -3147.852301 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.30454 -38.33821 -37.25044 -34.57609 -32.38443 -31.49063 -31.04720 -30.42627 -29.77251 -25.28431 -23.99755 -23.13267 -22.76964 -21.65384 -20.18138 -19.55501 -18.17838 -17.46518 -16.69143 -16.22277 -15.73598 -15.12371 -14.63275 -14.36176 -14.16445 -13.94136 -13.80354 -13.54118 -13.32651 -13.02740 -12.94956 -12.54489 -12.47280 -12.29752 -11.98575 -11.78599 -11.23884 -11.03694 -10.95136 -10.82949 -10.61616 -10.55232 -10.28192 -10.14406 -9.85147 -9.56860 -9.45171 -9.30177 -8.79688 -8.63563 -6.99730 -5.95782 -3.31553 1.98567 2.70987 3.26741 3.30493 3.48614 3.52056 4.36222 4.40398 4.52188 4.61953 4.92606 4.94581 4.97309 5.02596 5.16395 5.20984 5.26652 5.33435 5.36714 5.41072 5.58226 5.64509 5.67125 5.69421 5.81960 5.96280 6.03858 6.06756 6.12272 6.17178 6.33627 6.34340 6.40334 6.57369 6.63350 6.64306 6.65465 6.76288 6.92192 7.63409 7.95370 8.32195 8.33128 8.93183 9.71145 10.08926 11.20250 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039401 B = 0.003609 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.471645 B = 7757.302708 C = 8005.260290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.882 3.118 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.259 4.259 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.129 3.871 11 C -0.140 4.140 12 C 0.150 3.850 13 N -0.724 5.724 14 C 0.515 3.485 15 O -0.541 6.541 16 C -0.108 4.108 17 H 0.097 0.903 18 C -0.082 4.082 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.093 4.093 22 C -0.099 4.099 23 C -0.141 4.141 24 C 0.151 3.849 25 H 0.263 0.737 26 H 0.027 0.973 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.396 0.604 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.025 0.975 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.865 -8.136 -13.351 23.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.388 4.388 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.003 3.997 11 C -0.180 4.180 12 C 0.046 3.954 13 N -0.374 5.374 14 C 0.301 3.699 15 O -0.418 6.418 16 C -0.129 4.129 17 H 0.115 0.885 18 C -0.119 4.119 19 C -0.172 4.172 20 C -0.174 4.174 21 C -0.130 4.130 22 C -0.137 4.137 23 C -0.181 4.181 24 C 0.024 3.976 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.230 0.770 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.043 0.957 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 18.119 -7.940 -12.550 23.427 hybrid contribution 0.118 0.939 -0.605 1.124 sum 18.237 -7.001 -13.156 23.551 Atomic orbital electron populations 1.69835 1.05734 1.26555 1.53051 1.25286 0.95235 0.97570 0.99530 0.86968 0.80140 0.84678 0.77012 1.21632 1.23105 1.19485 1.18937 0.84918 0.94796 1.40103 0.89636 1.44404 1.08702 1.33335 1.46574 1.21303 0.97269 0.92043 0.89088 1.22340 0.97504 0.98423 0.99735 1.20988 0.94288 0.93141 0.86968 1.46313 1.15646 1.58358 1.17061 1.20559 0.81452 0.78773 0.89126 1.90696 1.64031 1.57639 1.29412 1.21411 0.98205 0.99264 0.94061 0.88471 1.20412 0.99903 0.98361 0.93214 1.21995 0.97986 0.98127 0.99131 1.22096 0.99162 0.97910 0.98189 1.20509 1.01473 0.98638 0.92394 1.21413 0.93950 1.00287 0.98079 1.22370 0.99342 0.98003 0.98359 1.20897 0.92317 0.91342 0.93034 0.92762 0.95504 0.90520 0.92289 0.91164 0.90001 0.76988 0.90418 0.90296 0.87646 0.87943 0.90745 0.90760 0.90616 0.91150 0.91869 0.92315 0.95730 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.78 13.97 55.49 0.78 -27.00 16 2 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 3 Si 0.88 22.32 24.34 -169.99 -4.14 18.18 16 4 H -0.29 -6.97 6.62 56.52 0.37 -6.60 16 5 H -0.30 -7.82 7.11 56.52 0.40 -7.41 16 6 H -0.27 -6.77 6.64 56.52 0.38 -6.39 16 7 C -0.26 -7.23 10.03 -15.06 -0.15 -7.38 16 8 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 9 N -0.61 -14.40 2.77 -172.32 -0.48 -14.88 16 10 C 0.13 2.78 4.20 -3.71 -0.02 2.76 16 11 C -0.14 -2.36 5.55 -26.61 -0.15 -2.51 16 12 C 0.15 2.41 2.42 -67.88 -0.16 2.25 16 13 N -0.72 -9.27 5.00 -53.76 -0.27 -9.54 16 14 C 0.52 6.90 7.10 -10.99 -0.08 6.82 16 15 O -0.54 -9.42 15.56 5.55 0.09 -9.33 16 16 C -0.11 -1.06 2.57 -91.55 -0.24 -1.29 16 17 H 0.10 0.84 8.12 -51.93 -0.42 0.42 16 18 C -0.08 -0.68 5.31 -28.18 -0.15 -0.83 16 19 C -0.15 -1.19 9.80 -35.90 -0.35 -1.54 16 20 C -0.16 -1.17 9.80 -35.90 -0.35 -1.52 16 21 C -0.09 -0.71 6.11 -28.18 -0.17 -0.88 16 22 C -0.10 -0.98 4.69 -26.51 -0.12 -1.10 16 23 C -0.14 -2.43 5.65 -26.61 -0.15 -2.58 16 24 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 25 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.03 0.58 7.07 -51.93 -0.37 0.21 16 27 H 0.08 1.79 4.49 -51.93 -0.23 1.56 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.08 1.47 7.58 -51.93 -0.39 1.08 16 31 H 0.40 4.02 8.36 -40.82 -0.34 3.68 16 32 H 0.08 0.55 7.96 -51.93 -0.41 0.13 16 33 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.11 0.69 8.06 -52.49 -0.42 0.26 16 35 H 0.10 0.64 8.06 -52.49 -0.42 0.22 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.82 7.90 -51.93 -0.41 0.41 16 39 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 1.33 7.93 -51.93 -0.41 0.91 16 LS Contribution 332.11 15.07 5.00 5.00 Total: -1.00 -32.09 332.11 -8.48 -40.57 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.25 Total: 1.21 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -2.21 Total: -4.21 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.03 Total: -51.42 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.14 Total: 18.18 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.09 -8.48 -40.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609328626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.786 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds