Wall clock time and date at job start Tue Mar 31 2020 00:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00246 * 2 1 4 4 H 1.48496 * 109.47179 * 272.91144 * 3 2 1 5 5 H 1.48493 * 109.47131 * 32.91350 * 3 2 1 6 6 H 1.48504 * 109.46895 * 152.91239 * 3 2 1 7 7 C 1.38818 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99247 * 339.35633 * 7 2 1 9 9 N 1.36934 * 120.00271 * 159.36067 * 7 2 1 10 10 C 1.46922 * 120.62798 * 332.62488 * 9 7 2 11 11 C 1.53190 * 108.77553 * 233.58428 * 10 9 7 12 12 C 1.53044 * 109.31338 * 305.37070 * 11 10 9 13 13 N 1.46506 * 109.45953 * 181.38361 * 12 11 10 14 14 C 1.34768 * 120.00005 * 154.97219 * 13 12 11 15 15 O 1.21284 * 120.00235 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00026 * 179.97438 * 14 13 12 17 17 H 1.09002 * 109.63806 * 300.41849 * 16 14 13 18 18 C 1.53023 * 109.81540 * 60.94915 * 16 14 13 19 19 C 1.50068 * 110.14609 * 169.22308 * 18 16 14 20 20 C 1.29446 * 124.07589 * 342.86662 * 19 18 16 21 21 C 1.50066 * 124.07707 * 0.47073 * 20 19 18 22 22 C 1.53024 * 110.14827 * 342.87013 * 21 20 19 23 23 C 1.53045 * 109.52824 * 61.36940 * 12 11 10 24 24 C 1.46930 * 120.62893 * 152.60351 * 9 7 2 25 25 H 0.97005 * 119.99847 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.58561 * 113.80293 * 10 9 7 27 27 H 1.08997 * 109.58844 * 353.37536 * 10 9 7 28 28 H 1.08994 * 109.50156 * 185.41854 * 11 10 9 29 29 H 1.09006 * 109.49846 * 65.31695 * 11 10 9 30 30 H 1.09001 * 109.45699 * 301.35370 * 12 11 10 31 31 H 0.97001 * 119.99849 * 334.96799 * 13 12 11 32 32 H 1.08995 * 109.35924 * 289.42804 * 18 16 14 33 33 H 1.09002 * 109.35886 * 49.15771 * 18 16 14 34 34 H 1.08001 * 117.96266 * 162.89361 * 19 18 16 35 35 H 1.08002 * 117.96154 * 180.48774 * 20 19 18 36 36 H 1.08994 * 109.36274 * 222.66037 * 21 20 19 37 37 H 1.09006 * 109.35566 * 103.07321 * 21 20 19 38 38 H 1.09000 * 109.64733 * 169.11975 * 22 21 20 39 39 H 1.09002 * 109.63767 * 289.53898 * 22 21 20 40 40 H 1.09002 * 109.49775 * 58.57923 * 23 12 11 41 41 H 1.08997 * 109.49493 * 178.67493 * 23 12 11 42 42 H 1.08996 * 109.58637 * 246.20072 * 24 9 7 43 43 H 1.09007 * 109.58514 * 6.48285 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4361 2.0819 -1.3982 5 1 1.4799 2.6340 0.7607 6 1 3.5772 1.4230 0.6376 7 6 2.0102 -1.2022 -0.0005 8 1 1.5221 -2.1076 0.3289 9 7 3.3136 -1.2401 -0.4185 10 6 3.8175 -0.2583 -1.3885 11 6 4.4627 -1.0075 -2.5586 12 6 5.5293 -1.9642 -2.0206 13 7 6.1714 -2.6584 -3.1396 14 6 7.4219 -3.1423 -3.0040 15 8 8.0156 -3.0035 -1.9556 16 6 8.0822 -3.8569 -4.1549 17 1 7.4883 -4.7268 -4.4352 18 6 8.2051 -2.9106 -5.3512 19 6 9.0872 -3.5182 -6.4023 20 6 9.8990 -4.5033 -6.1871 21 6 10.0642 -5.1819 -4.8589 22 6 9.4906 -4.3049 -3.7439 23 6 4.8751 -2.9899 -1.0921 24 6 4.2349 -2.2632 0.0948 25 1 -0.4850 0.8401 0.0004 26 1 4.5599 0.3804 -0.9098 27 1 2.9910 0.3502 -1.7554 28 1 4.9254 -0.2919 -3.2381 29 1 3.7002 -1.5756 -3.0917 30 1 6.2782 -1.3984 -1.4664 31 1 5.6965 -2.7698 -3.9780 32 1 7.2159 -2.7285 -5.7709 33 1 8.6375 -1.9658 -5.0216 34 1 9.0422 -3.1078 -7.4003 35 1 10.4947 -4.8586 -7.0149 36 1 11.1236 -5.3572 -4.6719 37 1 9.5391 -6.1371 -4.8735 38 1 9.4374 -4.8775 -2.8179 39 1 10.1283 -3.4327 -3.5992 40 1 4.1086 -3.5390 -1.6391 41 1 5.6313 -3.6853 -0.7278 42 1 5.0112 -1.7880 0.6944 43 1 3.6841 -2.9760 0.7085 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609328626.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:05 Heat of formation + Delta-G solvation = -35.539696 kcal Electronic energy + Delta-G solvation = -22071.497448 eV Core-core repulsion = 18922.745173 eV Total energy + Delta-G solvation = -3148.752275 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.35185 -39.56066 -38.37523 -36.06699 -34.12552 -32.61852 -31.99736 -31.77148 -31.12496 -26.95984 -25.04862 -24.43058 -23.91039 -23.09690 -21.33491 -21.01224 -18.97620 -18.82743 -18.07106 -17.57621 -16.91358 -16.47053 -15.98834 -15.79792 -15.37714 -15.25338 -14.85852 -14.68386 -14.49406 -14.38346 -14.18208 -13.90318 -13.80176 -13.49356 -13.19438 -13.11207 -12.60976 -12.56306 -12.29092 -12.04753 -11.94972 -11.79424 -11.70311 -11.56911 -11.39210 -11.27162 -10.82093 -10.58720 -10.02283 -9.85069 -8.98115 -8.17281 -5.49784 1.28653 1.42279 1.44266 1.50951 1.66066 2.19216 2.40648 3.04670 3.30682 3.58474 3.72485 3.78161 3.88810 3.97103 4.21449 4.24316 4.30159 4.31539 4.42340 4.47076 4.49557 4.61610 4.63427 4.69785 4.75466 4.86163 4.90592 4.94054 5.00523 5.05379 5.06730 5.07730 5.15027 5.28308 5.34870 5.39972 5.54010 5.79603 5.85574 6.08434 6.11721 6.61250 6.89416 7.29791 7.60014 8.00633 9.02590 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039401 B = 0.003609 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.471645 B = 7757.302708 C = 8005.260290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.033 4.033 3 Si 0.944 3.056 4 H -0.267 1.267 5 H -0.311 1.311 6 H -0.266 1.266 7 C -0.250 4.250 8 H 0.053 0.947 9 N -0.619 5.619 10 C 0.121 3.879 11 C -0.127 4.127 12 C 0.159 3.841 13 N -0.711 5.711 14 C 0.514 3.486 15 O -0.584 6.584 16 C -0.100 4.100 17 H 0.116 0.884 18 C -0.080 4.080 19 C -0.161 4.161 20 C -0.160 4.160 21 C -0.090 4.090 22 C -0.100 4.100 23 C -0.128 4.128 24 C 0.147 3.853 25 H 0.262 0.738 26 H 0.030 0.970 27 H 0.059 0.941 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.413 0.587 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.027 0.973 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.826 -8.288 -15.814 26.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.228 4.228 3 Si 0.773 3.227 4 H -0.194 1.194 5 H -0.240 1.240 6 H -0.191 1.191 7 C -0.379 4.379 8 H 0.071 0.929 9 N -0.344 5.344 10 C -0.005 4.005 11 C -0.166 4.166 12 C 0.054 3.946 13 N -0.362 5.362 14 C 0.302 3.698 15 O -0.464 6.464 16 C -0.121 4.121 17 H 0.134 0.866 18 C -0.117 4.117 19 C -0.179 4.179 20 C -0.177 4.177 21 C -0.127 4.127 22 C -0.138 4.138 23 C -0.168 4.168 24 C 0.021 3.979 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.077 0.923 28 H 0.108 0.892 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.250 0.750 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.045 0.955 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 20.117 -8.112 -15.067 26.410 hybrid contribution -0.458 0.885 0.210 1.018 sum 19.659 -7.227 -14.857 25.679 Atomic orbital electron populations 1.69957 1.07365 1.27276 1.55582 1.25882 0.95819 1.00828 1.00228 0.85947 0.78519 0.80297 0.77904 1.19375 1.24002 1.19125 1.18870 0.86573 0.93647 1.38849 0.92929 1.44512 1.07764 1.34490 1.47627 1.21377 0.96870 0.92045 0.90163 1.22153 0.97563 0.98780 0.98137 1.20655 0.93656 0.92678 0.87622 1.46073 1.15573 1.57708 1.16845 1.21205 0.81102 0.78028 0.89439 1.90684 1.65013 1.59267 1.31405 1.21411 0.97861 0.99746 0.93055 0.86630 1.20423 1.01146 0.97436 0.92680 1.22092 0.97952 0.98327 0.99535 1.22254 0.99201 0.97916 0.98373 1.20503 1.02001 0.98523 0.91670 1.21393 0.94025 0.99933 0.98481 1.22190 0.99211 0.97980 0.97374 1.21006 0.91770 0.90711 0.94401 0.92862 0.95170 0.92312 0.89177 0.90807 0.91595 0.74973 0.88623 0.91344 0.86205 0.86427 0.89902 0.89764 0.92107 0.92688 0.91793 0.91822 0.95472 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.83 13.97 21.65 0.30 -59.53 16 2 C -0.03 -1.91 5.23 84.86 0.44 -1.46 16 3 Si 0.94 46.33 24.34 68.60 1.67 48.00 16 4 H -0.27 -12.10 6.62 99.48 0.66 -11.44 16 5 H -0.31 -15.57 7.11 99.48 0.71 -14.86 16 6 H -0.27 -12.76 6.64 99.48 0.66 -12.10 16 7 C -0.25 -14.19 10.03 84.04 0.84 -13.35 16 8 H 0.05 3.27 8.06 -2.91 -0.02 3.24 16 9 N -0.62 -29.19 2.77 -699.09 -1.94 -31.13 16 10 C 0.12 4.98 4.20 86.36 0.36 5.34 16 11 C -0.13 -3.91 5.55 30.67 0.17 -3.74 16 12 C 0.16 4.77 2.42 45.02 0.11 4.88 16 13 N -0.71 -16.25 5.00 -442.38 -2.21 -18.46 16 14 C 0.51 12.79 7.10 87.66 0.62 13.42 16 15 O -0.58 -19.87 15.56 -3.04 -0.05 -19.91 16 16 C -0.10 -1.71 2.57 -11.40 -0.03 -1.74 16 17 H 0.12 1.61 8.12 -2.39 -0.02 1.59 16 18 C -0.08 -1.09 5.31 29.66 0.16 -0.94 16 19 C -0.16 -1.97 9.80 27.04 0.27 -1.70 16 20 C -0.16 -1.91 9.80 27.03 0.27 -1.65 16 21 C -0.09 -1.15 6.11 29.66 0.18 -0.97 16 22 C -0.10 -1.83 4.69 30.74 0.14 -1.69 16 23 C -0.13 -4.23 5.65 30.67 0.17 -4.06 16 24 C 0.15 5.90 6.52 86.36 0.56 6.46 16 25 H 0.26 15.58 8.31 -92.70 -0.77 14.81 16 26 H 0.03 1.24 7.07 -2.39 -0.02 1.22 16 27 H 0.06 2.64 4.49 -2.39 -0.01 2.63 16 28 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 30 H 0.07 2.26 7.58 -2.39 -0.02 2.24 16 31 H 0.41 6.84 8.36 -92.71 -0.77 6.06 16 32 H 0.10 0.97 7.96 -2.39 -0.02 0.95 16 33 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 34 H 0.12 1.13 8.06 -2.91 -0.02 1.11 16 35 H 0.12 1.07 8.06 -2.91 -0.02 1.05 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.06 1.28 7.90 -2.39 -0.02 1.26 16 39 H 0.05 1.16 8.13 -2.39 -0.02 1.14 16 40 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.06 2.39 7.93 -2.38 -0.02 2.37 16 Total: -1.00 -70.54 332.11 2.16 -68.38 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.11 Total: 13.85 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 4.27 Total: -1.19 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -3.84 Total: -109.12 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.05 Total: -19.91 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.67 Total: 48.00 kcal Total: -70.54 2.16 -68.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609328626.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.836 kcal (2) G-P(sol) polarization free energy of solvation -70.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds