Wall clock time and date at job start Tue Mar 31 2020 00:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86807 * 119.99851 * 2 1 4 4 H 1.48497 * 109.46964 * 240.00200 * 3 2 1 5 5 H 1.48495 * 109.47036 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46803 * 120.00120 * 3 2 1 7 7 C 1.38808 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99887 * 163.06646 * 7 2 1 9 9 N 1.36931 * 119.99945 * 343.07211 * 7 2 1 10 10 C 1.46921 * 120.63267 * 331.83328 * 9 7 2 11 11 C 1.53197 * 108.77537 * 233.63516 * 10 9 7 12 12 C 1.53039 * 109.31079 * 305.35992 * 11 10 9 13 13 N 1.46503 * 109.46076 * 181.38730 * 12 11 10 14 14 C 1.34772 * 120.00507 * 155.00092 * 13 12 11 15 15 O 1.21282 * 119.99693 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00532 * 179.97438 * 14 13 12 17 17 C 1.52998 * 109.47502 * 179.97438 * 16 14 13 18 18 H 1.08997 * 110.34665 * 307.29246 * 17 16 14 19 19 C 1.51102 * 110.38284 * 69.69871 * 17 16 14 20 20 C 1.30529 * 111.10315 * 135.24823 * 19 17 16 21 21 C 1.51106 * 111.10576 * 0.02562 * 20 19 17 22 22 C 1.54632 * 110.38992 * 185.00251 * 17 16 14 23 23 C 1.53044 * 109.53743 * 61.37116 * 12 11 10 24 24 C 1.46927 * 120.62973 * 151.86152 * 9 7 2 25 25 H 0.96999 * 119.99895 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.58674 * 113.84937 * 10 9 7 27 27 H 1.08996 * 109.70253 * 353.49172 * 10 9 7 28 28 H 1.09002 * 109.49140 * 185.41383 * 11 10 9 29 29 H 1.08995 * 109.49834 * 65.32083 * 11 10 9 30 30 H 1.08993 * 109.46653 * 301.36185 * 12 11 10 31 31 H 0.97004 * 119.99836 * 335.00479 * 13 12 11 32 32 H 1.09001 * 109.46962 * 59.99765 * 16 14 13 33 33 H 1.08998 * 109.47233 * 300.00431 * 16 14 13 34 34 H 1.08000 * 124.45005 * 315.22757 * 19 17 16 35 35 H 1.08004 * 124.44633 * 179.97438 * 20 19 17 36 36 H 1.08997 * 110.38321 * 224.74872 * 21 20 19 37 37 H 1.09002 * 110.48351 * 102.41981 * 21 20 19 38 38 H 1.09001 * 111.03644 * 334.58368 * 22 17 16 39 39 H 1.08998 * 111.03882 * 98.48470 * 22 17 16 40 40 H 1.09004 * 109.49828 * 58.58121 * 23 12 11 41 41 H 1.08998 * 109.49667 * 178.68328 * 23 12 11 42 42 H 1.09004 * 109.58426 * 246.15400 * 24 9 7 43 43 H 1.09004 * 109.58797 * 6.43456 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2223 -0.2730 9 7 1.3701 -2.3624 0.3442 10 6 0.2263 -2.3409 1.2661 11 6 0.4984 -3.3202 2.4124 12 6 0.8133 -4.7016 1.8338 13 7 1.0416 -5.6486 2.9280 14 6 0.8387 -6.9665 2.7321 15 8 0.4676 -7.3685 1.6497 16 6 1.0740 -7.9406 3.8575 17 6 0.7723 -9.3606 3.3744 18 1 -0.2220 -9.4065 2.9301 19 6 1.8170 -9.8115 2.3802 20 6 2.2102 -11.0304 2.6318 21 6 1.4927 -11.5960 3.8355 22 6 0.8856 -10.3637 4.5458 23 6 2.0686 -4.6174 0.9623 24 6 1.8143 -3.6527 -0.2003 25 1 -0.4850 0.8400 0.0004 26 1 -0.6767 -2.6418 0.7351 27 1 0.0966 -1.3358 1.6673 28 1 -0.3821 -3.3856 3.0516 29 1 1.3480 -2.9684 2.9975 30 1 -0.0267 -5.0419 1.2284 31 1 1.3387 -5.3271 3.7937 32 1 0.4194 -7.6949 4.6936 33 1 2.1135 -7.8793 4.1798 34 1 2.1893 -9.2050 1.5678 35 1 2.9505 -11.5649 2.0550 36 1 2.1976 -12.1041 4.4935 37 1 0.7048 -12.2812 3.5227 38 1 1.5556 -9.9880 5.3192 39 1 -0.0960 -10.5944 4.9597 40 1 2.9035 -4.2534 1.5611 41 1 2.3057 -5.6061 0.5695 42 1 1.0407 -4.0605 -0.8510 43 1 2.7335 -3.5124 -0.7691 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609329746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:50 Heat of formation + Delta-G solvation = -12.664712 kcal Electronic energy + Delta-G solvation = -21747.121270 eV Core-core repulsion = 18599.360929 eV Total energy + Delta-G solvation = -3147.760341 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.01989 -38.54079 -37.16807 -34.36344 -32.32451 -31.49658 -30.08745 -29.34412 -29.05005 -25.92441 -24.56814 -22.28395 -21.90927 -20.67104 -20.14554 -19.33985 -18.68457 -17.11212 -16.58905 -15.99410 -15.88157 -15.17367 -14.80966 -14.72226 -13.90050 -13.59769 -13.55174 -13.13799 -12.87635 -12.48591 -12.38639 -12.12870 -11.99377 -11.98363 -11.47191 -11.43127 -11.28011 -11.10468 -10.89697 -10.84607 -10.71591 -10.48458 -10.27570 -10.03459 -9.84018 -9.65916 -9.38994 -9.00357 -8.66973 -8.44944 -6.68269 -5.79561 -3.21895 2.20980 2.85503 3.37549 3.43297 3.43975 3.45069 4.43909 4.45818 4.49403 4.70515 4.92033 5.07878 5.23567 5.31031 5.34612 5.38214 5.44925 5.49299 5.53116 5.60744 5.61544 5.69933 5.77300 5.89461 6.01869 6.08553 6.12118 6.28727 6.36220 6.48839 6.54080 6.57219 6.61197 6.80472 6.81272 6.95389 7.00079 7.31883 7.60247 7.76631 7.80972 8.44539 8.47387 9.20766 9.83970 10.41235 11.29390 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.050387 B = 0.003107 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.564951 B = 9009.014479 C = 9195.441353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.147 4.147 12 C 0.150 3.850 13 N -0.727 5.727 14 C 0.508 3.492 15 O -0.541 6.541 16 C -0.134 4.134 17 C -0.054 4.054 18 H 0.090 0.910 19 C -0.137 4.137 20 C -0.187 4.187 21 C -0.098 4.098 22 C -0.123 4.123 23 C -0.138 4.138 24 C 0.147 3.853 25 H 0.255 0.745 26 H 0.020 0.980 27 H 0.091 0.909 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.395 0.605 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.020 0.980 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.349 -18.058 11.327 21.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.047 3.953 13 N -0.377 5.377 14 C 0.294 3.706 15 O -0.418 6.418 16 C -0.174 4.174 17 C -0.072 4.072 18 H 0.108 0.892 19 C -0.154 4.154 20 C -0.205 4.205 21 C -0.135 4.135 22 C -0.160 4.160 23 C -0.178 4.178 24 C 0.020 3.980 25 H 0.065 0.935 26 H 0.038 0.962 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.228 0.772 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.038 0.962 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.955 -18.180 10.520 21.095 hybrid contribution 0.622 1.075 0.360 1.293 sum 2.576 -17.105 10.880 20.435 Atomic orbital electron populations 1.70019 1.05252 1.25647 1.53893 1.25058 0.95297 0.98427 1.00880 0.86358 0.78895 0.83312 0.78129 1.20866 1.21631 1.21061 1.19154 0.92570 0.84783 1.41758 0.91700 1.44079 1.35831 1.01654 1.49986 1.20731 0.88880 0.97903 0.87682 1.22530 1.00463 0.94861 1.00790 1.21017 0.98399 0.88299 0.87578 1.46396 1.68854 1.06737 1.15707 1.20639 0.77196 0.83092 0.89699 1.90697 1.46196 1.78267 1.26634 1.21732 1.03736 0.94245 0.97676 1.20819 0.99714 0.92446 0.94266 0.89153 1.23330 0.96527 0.96669 0.98920 1.23226 1.00932 0.96912 0.99400 1.21323 0.98975 0.97758 0.95460 1.22569 1.01145 0.95166 0.97141 1.22362 0.97190 0.99427 0.98848 1.20874 0.97853 0.86561 0.92668 0.93544 0.96168 0.89069 0.92809 0.92229 0.90155 0.77206 0.89003 0.89013 0.85686 0.86156 0.91508 0.90983 0.90961 0.90917 0.92428 0.92818 0.96231 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.17 11.19 55.49 0.62 -25.54 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16 8 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 9 N -0.59 -14.93 2.99 -172.32 -0.52 -15.44 16 10 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 11 C -0.15 -2.69 5.55 -26.61 -0.15 -2.84 16 12 C 0.15 2.63 2.42 -67.89 -0.16 2.47 16 13 N -0.73 -10.01 5.08 -53.77 -0.27 -10.29 16 14 C 0.51 7.10 7.59 -10.99 -0.08 7.02 16 15 O -0.54 -9.70 14.58 5.56 0.08 -9.61 16 16 C -0.13 -1.31 5.09 -27.89 -0.14 -1.45 16 17 C -0.05 -0.56 2.52 -90.72 -0.23 -0.79 16 18 H 0.09 1.08 7.90 -51.93 -0.41 0.67 16 19 C -0.14 -1.57 9.26 -35.70 -0.33 -1.90 16 20 C -0.19 -1.83 10.77 -35.70 -0.38 -2.21 16 21 C -0.10 -0.79 6.81 -26.82 -0.18 -0.98 16 22 C -0.12 -0.96 6.71 -25.00 -0.17 -1.13 16 23 C -0.14 -2.55 5.65 -26.61 -0.15 -2.70 16 24 C 0.15 3.21 6.52 -3.71 -0.02 3.19 16 25 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.09 2.39 6.06 -51.93 -0.31 2.07 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.08 1.60 7.58 -51.93 -0.39 1.20 16 31 H 0.39 4.32 8.60 -40.82 -0.35 3.97 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.78 8.13 -51.93 -0.42 0.35 16 34 H 0.13 1.65 7.58 -52.49 -0.40 1.25 16 35 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.50 7.91 -51.93 -0.41 0.09 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 LS Contribution 340.82 15.07 5.14 5.14 Total: -1.00 -31.11 340.82 -9.55 -40.65 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -7.31 Total: 2.89 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -2.26 Total: -4.35 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -0.17 Total: -51.27 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.08 Total: -9.61 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.11 -9.55 -40.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609329746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.990 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds