Wall clock time and date at job start Tue Mar 31 2020 00:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86807 * 119.99851 * 2 1 4 4 H 1.48497 * 109.46964 * 240.00200 * 3 2 1 5 5 H 1.48495 * 109.47036 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46803 * 120.00120 * 3 2 1 7 7 C 1.38808 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99887 * 163.06646 * 7 2 1 9 9 N 1.36931 * 119.99945 * 343.07211 * 7 2 1 10 10 C 1.46921 * 120.63267 * 331.83328 * 9 7 2 11 11 C 1.53197 * 108.77537 * 233.63516 * 10 9 7 12 12 C 1.53039 * 109.31079 * 305.35992 * 11 10 9 13 13 N 1.46503 * 109.46076 * 181.38730 * 12 11 10 14 14 C 1.34772 * 120.00507 * 155.00092 * 13 12 11 15 15 O 1.21282 * 119.99693 * 0.02562 * 14 13 12 16 16 C 1.50693 * 120.00532 * 179.97438 * 14 13 12 17 17 C 1.52998 * 109.47502 * 179.97438 * 16 14 13 18 18 H 1.08997 * 110.34665 * 307.29246 * 17 16 14 19 19 C 1.51102 * 110.38284 * 69.69871 * 17 16 14 20 20 C 1.30529 * 111.10315 * 135.24823 * 19 17 16 21 21 C 1.51106 * 111.10576 * 0.02562 * 20 19 17 22 22 C 1.54632 * 110.38992 * 185.00251 * 17 16 14 23 23 C 1.53044 * 109.53743 * 61.37116 * 12 11 10 24 24 C 1.46927 * 120.62973 * 151.86152 * 9 7 2 25 25 H 0.96999 * 119.99895 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.58674 * 113.84937 * 10 9 7 27 27 H 1.08996 * 109.70253 * 353.49172 * 10 9 7 28 28 H 1.09002 * 109.49140 * 185.41383 * 11 10 9 29 29 H 1.08995 * 109.49834 * 65.32083 * 11 10 9 30 30 H 1.08993 * 109.46653 * 301.36185 * 12 11 10 31 31 H 0.97004 * 119.99836 * 335.00479 * 13 12 11 32 32 H 1.09001 * 109.46962 * 59.99765 * 16 14 13 33 33 H 1.08998 * 109.47233 * 300.00431 * 16 14 13 34 34 H 1.08000 * 124.45005 * 315.22757 * 19 17 16 35 35 H 1.08004 * 124.44633 * 179.97438 * 20 19 17 36 36 H 1.08997 * 110.38321 * 224.74872 * 21 20 19 37 37 H 1.09002 * 110.48351 * 102.41981 * 21 20 19 38 38 H 1.09001 * 111.03644 * 334.58368 * 22 17 16 39 39 H 1.08998 * 111.03882 * 98.48470 * 22 17 16 40 40 H 1.09004 * 109.49828 * 58.58121 * 23 12 11 41 41 H 1.08998 * 109.49667 * 178.68328 * 23 12 11 42 42 H 1.09004 * 109.58426 * 246.15400 * 24 9 7 43 43 H 1.09004 * 109.58797 * 6.43456 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2223 -0.2730 9 7 1.3701 -2.3624 0.3442 10 6 0.2263 -2.3409 1.2661 11 6 0.4984 -3.3202 2.4124 12 6 0.8133 -4.7016 1.8338 13 7 1.0416 -5.6486 2.9280 14 6 0.8387 -6.9665 2.7321 15 8 0.4676 -7.3685 1.6497 16 6 1.0740 -7.9406 3.8575 17 6 0.7723 -9.3606 3.3744 18 1 -0.2220 -9.4065 2.9301 19 6 1.8170 -9.8115 2.3802 20 6 2.2102 -11.0304 2.6318 21 6 1.4927 -11.5960 3.8355 22 6 0.8856 -10.3637 4.5458 23 6 2.0686 -4.6174 0.9623 24 6 1.8143 -3.6527 -0.2003 25 1 -0.4850 0.8400 0.0004 26 1 -0.6767 -2.6418 0.7351 27 1 0.0966 -1.3358 1.6673 28 1 -0.3821 -3.3856 3.0516 29 1 1.3480 -2.9684 2.9975 30 1 -0.0267 -5.0419 1.2284 31 1 1.3387 -5.3271 3.7937 32 1 0.4194 -7.6949 4.6936 33 1 2.1135 -7.8793 4.1798 34 1 2.1893 -9.2050 1.5678 35 1 2.9505 -11.5649 2.0550 36 1 2.1976 -12.1041 4.4935 37 1 0.7048 -12.2812 3.5227 38 1 1.5556 -9.9880 5.3192 39 1 -0.0960 -10.5944 4.9597 40 1 2.9035 -4.2534 1.5611 41 1 2.3057 -5.6061 0.5695 42 1 1.0407 -4.0605 -0.8510 43 1 2.7335 -3.5124 -0.7691 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609329746.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:49 Heat of formation + Delta-G solvation = -31.312272 kcal Electronic energy + Delta-G solvation = -21747.929889 eV Core-core repulsion = 18599.360929 eV Total energy + Delta-G solvation = -3148.568960 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.12795 -39.58210 -38.62815 -35.95452 -33.97538 -32.61596 -31.72999 -31.00776 -29.75515 -27.29924 -26.00322 -23.97351 -23.54805 -21.50425 -21.25994 -20.90883 -19.58181 -18.83512 -17.79184 -17.25929 -16.81382 -16.74080 -16.13045 -15.72164 -15.57288 -15.37229 -14.89739 -14.64490 -14.38130 -14.11145 -13.60357 -13.22447 -13.02564 -12.91568 -12.73698 -12.64780 -12.58681 -12.55680 -12.23672 -12.07031 -12.03629 -11.97329 -11.88439 -11.67725 -11.55514 -11.35770 -10.68820 -10.56523 -9.95432 -9.76755 -8.72770 -7.89256 -5.35556 1.40887 1.48119 1.49928 1.57312 1.76173 2.29201 2.51033 3.26469 3.61894 3.68376 3.76264 3.87844 4.01593 4.03005 4.10451 4.32271 4.39543 4.44007 4.57425 4.61363 4.62906 4.70344 4.79733 4.80887 4.84395 4.99653 5.01001 5.03262 5.06869 5.13478 5.14472 5.27398 5.32555 5.45131 5.45803 5.60018 5.62668 5.69284 5.72190 6.01100 6.37167 6.69761 7.12705 7.39506 7.81947 8.35276 9.17787 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.050387 B = 0.003107 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.564951 B = 9009.014479 C = 9195.441353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.971 3.029 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.267 4.267 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.179 3.821 11 C -0.128 4.128 12 C 0.162 3.838 13 N -0.715 5.715 14 C 0.504 3.496 15 O -0.585 6.585 16 C -0.122 4.122 17 C -0.055 4.055 18 H 0.066 0.934 19 C -0.168 4.168 20 C -0.175 4.175 21 C -0.100 4.100 22 C -0.114 4.114 23 C -0.122 4.122 24 C 0.144 3.856 25 H 0.251 0.749 26 H -0.008 1.008 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.414 0.586 32 H 0.122 0.878 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.128 0.872 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.004 0.996 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.626 -19.247 14.011 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.799 3.201 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.397 4.397 8 H 0.085 0.915 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.168 4.168 12 C 0.057 3.943 13 N -0.367 5.367 14 C 0.292 3.708 15 O -0.465 6.465 16 C -0.162 4.162 17 C -0.074 4.074 18 H 0.085 0.915 19 C -0.186 4.186 20 C -0.193 4.193 21 C -0.137 4.137 22 C -0.152 4.152 23 C -0.162 4.162 24 C 0.018 3.982 25 H 0.060 0.940 26 H 0.010 0.990 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.250 0.750 32 H 0.140 0.860 33 H 0.132 0.868 34 H 0.115 0.885 35 H 0.146 0.854 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.022 0.978 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.256 -19.395 13.245 23.711 hybrid contribution 0.217 1.359 -0.573 1.491 sum 3.474 -18.035 12.672 22.314 Atomic orbital electron populations 1.70185 1.06741 1.26098 1.55169 1.25846 0.96063 1.01618 1.00965 0.85295 0.77524 0.78917 0.78412 1.20299 1.21977 1.20035 1.19495 0.92899 0.85867 1.41432 0.91507 1.44339 1.35983 1.02170 1.50778 1.20560 0.87613 0.97807 0.88785 1.22247 1.01937 0.93746 0.98827 1.20583 0.96850 0.88597 0.88312 1.46134 1.68802 1.06273 1.15477 1.21469 0.75774 0.83290 0.90220 1.90689 1.48062 1.78911 1.28859 1.21765 1.05702 0.92317 0.96409 1.20819 0.97962 0.93619 0.95008 0.91532 1.23272 0.98332 0.97550 0.99490 1.23522 1.00079 0.96147 0.99545 1.21401 0.99331 0.98082 0.94883 1.22573 1.02348 0.93930 0.96310 1.22149 0.97934 0.98399 0.97743 1.20961 0.97220 0.86079 0.93926 0.93954 0.98990 0.91831 0.90488 0.91104 0.92898 0.74981 0.85961 0.86848 0.88453 0.85447 0.89676 0.90498 0.89233 0.89595 0.91526 0.92473 0.97773 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.62 11.19 21.65 0.24 -55.37 16 2 C -0.05 -2.77 4.92 84.86 0.42 -2.35 16 3 Si 0.97 44.65 29.59 68.60 2.03 46.68 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 7 C -0.27 -14.83 9.58 84.03 0.81 -14.02 16 8 H 0.07 3.61 7.89 -2.91 -0.02 3.58 16 9 N -0.61 -31.29 2.99 -699.10 -2.09 -33.38 16 10 C 0.18 8.64 5.30 86.36 0.46 9.10 16 11 C -0.13 -4.58 5.55 30.67 0.17 -4.41 16 12 C 0.16 5.56 2.42 45.02 0.11 5.66 16 13 N -0.72 -18.27 5.08 -442.42 -2.25 -20.51 16 14 C 0.50 13.44 7.59 87.66 0.67 14.10 16 15 O -0.59 -21.27 14.58 -3.04 -0.04 -21.31 16 16 C -0.12 -2.04 5.09 29.85 0.15 -1.89 16 17 C -0.06 -1.06 2.52 -10.86 -0.03 -1.08 16 18 H 0.07 1.57 7.90 -2.39 -0.02 1.55 16 19 C -0.17 -3.78 9.26 26.26 0.24 -3.54 16 20 C -0.18 -3.16 10.77 26.26 0.28 -2.88 16 21 C -0.10 -1.33 6.81 30.54 0.21 -1.12 16 22 C -0.11 -1.41 6.71 31.71 0.21 -1.20 16 23 C -0.12 -4.46 5.65 30.67 0.17 -4.29 16 24 C 0.14 6.42 6.52 86.36 0.56 6.99 16 25 H 0.25 14.44 8.31 -92.71 -0.77 13.66 16 26 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 27 H 0.06 3.42 6.06 -2.39 -0.01 3.41 16 28 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 29 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 31 H 0.41 7.63 8.60 -92.71 -0.80 6.83 16 32 H 0.12 1.34 8.14 -2.39 -0.02 1.33 16 33 H 0.11 1.47 8.13 -2.39 -0.02 1.45 16 34 H 0.10 2.69 7.58 -2.91 -0.02 2.67 16 35 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.09 0.83 7.91 -2.39 -0.02 0.81 16 39 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 41 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 43 H 0.06 2.46 7.93 -2.38 -0.02 2.44 16 Total: -1.00 -69.92 340.82 2.50 -67.42 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.18 Total: 17.41 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 4.43 Total: -0.92 kcal Atomic # 7 Polarization: -105.17 SS G_CDS: -4.10 Total: -109.27 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.04 Total: -21.31 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -69.92 2.50 -67.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609329746.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.109 kcal (2) G-P(sol) polarization free energy of solvation -69.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds