Wall clock time and date at job start Tue Mar 31 2020 00:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99900 * 2 1 4 4 H 1.48503 * 109.47179 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47229 * 299.99570 * 3 2 1 6 6 H 1.48502 * 109.47136 * 59.99656 * 3 2 1 7 7 C 1.38810 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.08011 * 120.00028 * 163.07083 * 7 2 1 9 9 N 1.36938 * 120.00150 * 343.07447 * 7 2 1 10 10 C 1.46923 * 120.62890 * 331.82504 * 9 7 2 11 11 C 1.53192 * 108.89086 * 233.55909 * 10 9 7 12 12 C 1.53070 * 109.29486 * 305.57609 * 11 10 9 13 13 N 1.46501 * 109.44092 * 181.23784 * 12 11 10 14 14 C 1.34777 * 120.00012 * 84.79828 * 13 12 11 15 15 O 1.21618 * 119.99936 * 359.97438 * 14 13 12 16 16 C 1.47096 * 120.00259 * 179.97438 * 14 13 12 17 17 C 1.31550 * 118.10797 * 179.73549 * 16 14 13 18 18 C 1.50090 * 123.79670 * 180.14554 * 17 16 14 19 19 C 1.53014 * 110.19338 * 343.32113 * 18 17 16 20 20 C 1.53365 * 108.50799 * 49.53520 * 19 18 17 21 21 C 1.50100 * 118.10383 * 359.97438 * 16 14 13 22 22 C 1.53041 * 109.65895 * 61.15317 * 12 11 10 23 23 C 1.46928 * 120.63140 * 151.84599 * 9 7 2 24 24 H 0.96997 * 120.00271 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.58359 * 353.41536 * 10 9 7 26 26 H 1.08998 * 109.58755 * 113.69301 * 10 9 7 27 27 H 1.08996 * 109.49962 * 65.38845 * 11 10 9 28 28 H 1.09003 * 109.49143 * 185.48287 * 11 10 9 29 29 H 1.09004 * 109.34620 * 301.13143 * 12 11 10 30 30 H 0.96996 * 119.99909 * 264.79091 * 13 12 11 31 31 H 1.08001 * 118.09959 * 0.42495 * 17 16 14 32 32 H 1.08998 * 109.50343 * 222.98967 * 18 17 16 33 33 H 1.08998 * 109.16411 * 103.42893 * 18 17 16 34 34 H 1.09006 * 109.62779 * 289.83552 * 19 18 17 35 35 H 1.08997 * 109.79426 * 169.34376 * 19 18 17 36 36 H 1.09002 * 109.62437 * 172.26282 * 20 19 18 37 37 H 1.08997 * 109.62597 * 51.67860 * 20 19 18 38 38 H 1.09001 * 109.35967 * 283.03476 * 21 16 14 39 39 H 1.09008 * 109.35632 * 42.76101 * 21 16 14 40 40 H 1.09000 * 109.49960 * 178.74507 * 22 12 11 41 41 H 1.09005 * 109.49202 * 58.65442 * 22 12 11 42 42 H 1.09004 * 109.58144 * 246.15949 * 23 9 7 43 43 H 1.08998 * 109.58393 * 6.43925 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2718 9 7 1.3701 -2.3622 0.3463 10 6 0.2264 -2.3399 1.2683 11 6 0.4951 -3.3189 2.4156 12 6 0.8135 -4.7001 1.8377 13 7 1.0420 -5.6460 2.9329 14 6 -0.0024 -6.2683 3.5148 15 8 -1.1345 -6.0442 3.1310 16 6 0.2270 -7.2184 4.6140 17 6 -0.8195 -7.8006 5.1585 18 6 -0.7334 -8.7863 6.2871 19 6 0.6968 -9.3137 6.4198 20 6 1.6571 -8.1181 6.4362 21 6 1.6412 -7.4636 5.0532 22 6 2.0686 -4.6166 0.9659 23 6 1.8143 -3.6530 -0.1973 24 1 -0.4850 0.8400 -0.0004 25 1 0.0993 -1.3340 1.6685 26 1 -0.6772 -2.6386 0.7370 27 1 1.3438 -2.9677 3.0024 28 1 -0.3869 -3.3832 3.0529 29 1 -0.0268 -5.0410 1.2328 30 1 1.9449 -5.8246 3.2391 31 1 -1.7969 -7.5585 4.7679 32 1 -1.4095 -9.6194 6.0950 33 1 -1.0244 -8.2940 7.2151 34 1 0.9294 -9.9585 5.5722 35 1 0.7978 -9.8774 7.3472 36 1 2.6655 -8.4616 6.6672 37 1 1.3318 -7.3975 7.1866 38 1 2.1334 -8.1209 4.3363 39 1 2.1751 -6.5143 5.0988 40 1 2.3057 -5.6057 0.5739 41 1 2.9036 -4.2522 1.5644 42 1 1.0405 -4.0612 -0.8476 43 1 2.7334 -3.5129 -0.7663 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614984076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:04 Heat of formation + Delta-G solvation = -22.819583 kcal Electronic energy + Delta-G solvation = -21957.858815 eV Core-core repulsion = 18809.658125 eV Total energy + Delta-G solvation = -3148.200689 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.09536 -38.13380 -37.05308 -34.43414 -32.34775 -31.33681 -30.95753 -29.95214 -29.26467 -25.19627 -23.93341 -23.08214 -22.22033 -21.72638 -20.44159 -19.43255 -17.99747 -17.34743 -16.67866 -15.79902 -15.16362 -14.84824 -14.54813 -14.35938 -14.03226 -13.79897 -13.55066 -13.48873 -13.12191 -12.98458 -12.71594 -12.47087 -12.39064 -12.33236 -11.46910 -11.14157 -11.11541 -11.04995 -10.87213 -10.72903 -10.64724 -10.36567 -10.20090 -10.03913 -9.76668 -9.73446 -9.40528 -9.16420 -8.64925 -8.39719 -6.66673 -5.76927 -3.20183 1.43409 3.37789 3.44041 3.45825 3.46881 3.48125 4.44220 4.47115 4.50654 4.60137 4.90394 4.98473 5.13002 5.25281 5.30176 5.33492 5.42764 5.47935 5.50474 5.58407 5.61785 5.66210 5.72251 5.84739 5.86394 6.01054 6.10855 6.26064 6.32889 6.39358 6.46406 6.52676 6.64948 6.67286 6.80778 6.94719 6.99052 7.39964 7.69976 7.80474 7.81283 8.46322 8.48669 9.22555 9.85923 10.42877 11.31601 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036047 B = 0.003435 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.569743 B = 8149.290760 C = 8238.467449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.150 3.850 13 N -0.720 5.720 14 C 0.543 3.457 15 O -0.546 6.546 16 C -0.174 4.174 17 C -0.078 4.078 18 C -0.095 4.095 19 C -0.122 4.122 20 C -0.119 4.119 21 C -0.084 4.084 22 C -0.138 4.138 23 C 0.149 3.851 24 H 0.254 0.746 25 H 0.089 0.911 26 H 0.020 0.980 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.394 0.606 31 H 0.123 0.877 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.020 0.980 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.570 -17.956 12.638 22.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.047 3.953 11 C -0.186 4.186 12 C 0.046 3.954 13 N -0.370 5.370 14 C 0.331 3.669 15 O -0.425 6.425 16 C -0.177 4.177 17 C -0.098 4.098 18 C -0.132 4.132 19 C -0.160 4.160 20 C -0.156 4.156 21 C -0.121 4.121 22 C -0.178 4.178 23 C 0.021 3.979 24 H 0.064 0.936 25 H 0.107 0.893 26 H 0.038 0.962 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.229 0.771 31 H 0.141 0.859 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.038 0.962 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.670 -17.617 12.312 21.658 hybrid contribution 0.783 0.856 0.133 1.168 sum 3.453 -16.761 12.444 21.159 Atomic orbital electron populations 1.70044 1.05279 1.25431 1.53744 1.25069 0.95280 0.98464 1.00848 0.86234 0.79328 0.83988 0.77272 1.20260 1.21719 1.21574 1.19215 0.92547 0.84782 1.41806 0.91614 1.44107 1.35931 1.01531 1.49999 1.20747 0.88675 0.98060 0.87779 1.22557 1.00411 0.95174 1.00456 1.21048 0.98687 0.88745 0.86887 1.46272 1.09103 1.44500 1.37103 1.18556 0.85028 0.80690 0.82606 1.90783 1.22570 1.64944 1.64206 1.20846 0.96386 1.01051 0.99391 1.22852 0.99112 0.93496 0.94343 1.20574 0.97730 0.97744 0.97170 1.21630 0.94525 0.97715 1.02128 1.21585 0.99690 0.97583 0.96761 1.20399 0.93093 1.01308 0.97340 1.22326 0.96710 0.99697 0.99096 1.20835 0.97977 0.86744 0.92305 0.93634 0.89305 0.96156 0.92756 0.92863 0.90101 0.77139 0.85890 0.90248 0.90000 0.91562 0.91474 0.91323 0.91507 0.90467 0.90680 0.92653 0.91893 0.96220 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.60 11.20 55.49 0.62 -25.98 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.79 29.59 -169.99 -5.03 16.76 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.25 -7.00 9.58 -15.06 -0.14 -7.15 16 8 H 0.07 1.77 7.89 -52.48 -0.41 1.35 16 9 N -0.59 -15.03 3.00 -172.32 -0.52 -15.55 16 10 C 0.17 4.32 5.30 -3.71 -0.02 4.30 16 11 C -0.15 -3.01 5.66 -26.60 -0.15 -3.16 16 12 C 0.15 2.71 2.41 -67.87 -0.16 2.55 16 13 N -0.72 -10.73 5.01 -54.93 -0.28 -11.00 16 14 C 0.54 8.67 7.68 -12.67 -0.10 8.57 16 15 O -0.55 -10.96 15.62 5.26 0.08 -10.88 16 16 C -0.17 -2.09 5.79 -103.17 -0.60 -2.68 16 17 C -0.08 -0.87 9.42 -36.45 -0.34 -1.21 16 18 C -0.10 -0.73 6.11 -28.17 -0.17 -0.90 16 19 C -0.12 -0.83 6.00 -26.53 -0.16 -0.99 16 20 C -0.12 -0.86 6.00 -26.53 -0.16 -1.02 16 21 C -0.08 -0.75 5.01 -28.16 -0.14 -0.89 16 22 C -0.14 -2.35 5.55 -26.62 -0.15 -2.50 16 23 C 0.15 3.11 6.52 -3.71 -0.02 3.08 16 24 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.09 2.46 6.06 -51.93 -0.31 2.14 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 30 H 0.39 4.70 6.81 -40.82 -0.28 4.43 16 31 H 0.12 1.56 7.17 -52.49 -0.38 1.19 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.64 7.21 -51.92 -0.37 0.26 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 LS Contribution 336.42 15.07 5.07 5.07 Total: -1.00 -32.09 336.42 -9.64 -41.74 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -7.19 Total: 1.87 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -2.41 Total: -2.03 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.17 Total: -52.53 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.08 Total: -10.88 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.09 -9.64 -41.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614984076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.917 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds