Wall clock time and date at job start Tue Mar 31 2020 00:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99900 * 2 1 4 4 H 1.48503 * 109.47179 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47229 * 299.99570 * 3 2 1 6 6 H 1.48502 * 109.47136 * 59.99656 * 3 2 1 7 7 C 1.38810 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.08011 * 120.00028 * 163.07083 * 7 2 1 9 9 N 1.36938 * 120.00150 * 343.07447 * 7 2 1 10 10 C 1.46923 * 120.62890 * 331.82504 * 9 7 2 11 11 C 1.53192 * 108.89086 * 233.55909 * 10 9 7 12 12 C 1.53070 * 109.29486 * 305.57609 * 11 10 9 13 13 N 1.46501 * 109.44092 * 181.23784 * 12 11 10 14 14 C 1.34777 * 120.00012 * 84.79828 * 13 12 11 15 15 O 1.21618 * 119.99936 * 359.97438 * 14 13 12 16 16 C 1.47096 * 120.00259 * 179.97438 * 14 13 12 17 17 C 1.31550 * 118.10797 * 179.73549 * 16 14 13 18 18 C 1.50090 * 123.79670 * 180.14554 * 17 16 14 19 19 C 1.53014 * 110.19338 * 343.32113 * 18 17 16 20 20 C 1.53365 * 108.50799 * 49.53520 * 19 18 17 21 21 C 1.50100 * 118.10383 * 359.97438 * 16 14 13 22 22 C 1.53041 * 109.65895 * 61.15317 * 12 11 10 23 23 C 1.46928 * 120.63140 * 151.84599 * 9 7 2 24 24 H 0.96997 * 120.00271 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.58359 * 353.41536 * 10 9 7 26 26 H 1.08998 * 109.58755 * 113.69301 * 10 9 7 27 27 H 1.08996 * 109.49962 * 65.38845 * 11 10 9 28 28 H 1.09003 * 109.49143 * 185.48287 * 11 10 9 29 29 H 1.09004 * 109.34620 * 301.13143 * 12 11 10 30 30 H 0.96996 * 119.99909 * 264.79091 * 13 12 11 31 31 H 1.08001 * 118.09959 * 0.42495 * 17 16 14 32 32 H 1.08998 * 109.50343 * 222.98967 * 18 17 16 33 33 H 1.08998 * 109.16411 * 103.42893 * 18 17 16 34 34 H 1.09006 * 109.62779 * 289.83552 * 19 18 17 35 35 H 1.08997 * 109.79426 * 169.34376 * 19 18 17 36 36 H 1.09002 * 109.62437 * 172.26282 * 20 19 18 37 37 H 1.08997 * 109.62597 * 51.67860 * 20 19 18 38 38 H 1.09001 * 109.35967 * 283.03476 * 21 16 14 39 39 H 1.09008 * 109.35632 * 42.76101 * 21 16 14 40 40 H 1.09000 * 109.49960 * 178.74507 * 22 12 11 41 41 H 1.09005 * 109.49202 * 58.65442 * 22 12 11 42 42 H 1.09004 * 109.58144 * 246.15949 * 23 9 7 43 43 H 1.08998 * 109.58393 * 6.43925 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2718 9 7 1.3701 -2.3622 0.3463 10 6 0.2264 -2.3399 1.2683 11 6 0.4951 -3.3189 2.4156 12 6 0.8135 -4.7001 1.8377 13 7 1.0420 -5.6460 2.9329 14 6 -0.0024 -6.2683 3.5148 15 8 -1.1345 -6.0442 3.1310 16 6 0.2270 -7.2184 4.6140 17 6 -0.8195 -7.8006 5.1585 18 6 -0.7334 -8.7863 6.2871 19 6 0.6968 -9.3137 6.4198 20 6 1.6571 -8.1181 6.4362 21 6 1.6412 -7.4636 5.0532 22 6 2.0686 -4.6166 0.9659 23 6 1.8143 -3.6530 -0.1973 24 1 -0.4850 0.8400 -0.0004 25 1 0.0993 -1.3340 1.6685 26 1 -0.6772 -2.6386 0.7370 27 1 1.3438 -2.9677 3.0024 28 1 -0.3869 -3.3832 3.0529 29 1 -0.0268 -5.0410 1.2328 30 1 1.9449 -5.8246 3.2391 31 1 -1.7969 -7.5585 4.7679 32 1 -1.4095 -9.6194 6.0950 33 1 -1.0244 -8.2940 7.2151 34 1 0.9294 -9.9585 5.5722 35 1 0.7978 -9.8774 7.3472 36 1 2.6655 -8.4616 6.6672 37 1 1.3318 -7.3975 7.1866 38 1 2.1334 -8.1209 4.3363 39 1 2.1751 -6.5143 5.0988 40 1 2.3057 -5.6057 0.5739 41 1 2.9036 -4.2522 1.5644 42 1 1.0405 -4.0612 -0.8476 43 1 2.7334 -3.5129 -0.7663 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614984076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:03 Heat of formation + Delta-G solvation = -42.586262 kcal Electronic energy + Delta-G solvation = -21958.715962 eV Core-core repulsion = 18809.658125 eV Total energy + Delta-G solvation = -3149.057837 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.30876 -39.36163 -38.36513 -36.08319 -34.04001 -32.45516 -31.78394 -31.62466 -30.83556 -27.04202 -24.89623 -24.15952 -23.94506 -22.99000 -21.62296 -21.07482 -19.22063 -18.59234 -18.15245 -17.25756 -16.76697 -16.13562 -15.93429 -15.39018 -15.36964 -15.28634 -14.83893 -14.66581 -14.40662 -14.30465 -14.08299 -13.84313 -13.27825 -13.18327 -13.15736 -13.02661 -12.67860 -12.59894 -12.15741 -12.03949 -11.90772 -11.69985 -11.63454 -11.57005 -11.41940 -11.27650 -10.75754 -10.60931 -10.15631 -9.88216 -8.73706 -7.88850 -5.35827 0.44142 1.46554 1.48081 1.59213 2.21284 2.27395 2.50613 3.27185 3.58532 3.66959 3.77342 3.84952 4.04467 4.08210 4.19826 4.28395 4.29870 4.43548 4.44583 4.63234 4.67183 4.69116 4.76871 4.84081 4.91423 4.97200 5.01590 5.03978 5.06603 5.09827 5.19226 5.28179 5.29160 5.42133 5.48455 5.50111 5.55737 5.61995 5.66507 5.73078 6.36906 6.60556 7.11345 7.26140 7.82002 8.35340 9.18524 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036047 B = 0.003435 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.569743 B = 8149.290760 C = 8238.467449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.056 4.056 3 Si 0.971 3.029 4 H -0.261 1.261 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.261 4.261 8 H 0.075 0.925 9 N -0.610 5.610 10 C 0.184 3.816 11 C -0.130 4.130 12 C 0.160 3.840 13 N -0.705 5.705 14 C 0.536 3.464 15 O -0.597 6.597 16 C -0.184 4.184 17 C -0.072 4.072 18 C -0.093 4.093 19 C -0.120 4.120 20 C -0.117 4.117 21 C -0.082 4.082 22 C -0.121 4.121 23 C 0.141 3.859 24 H 0.249 0.751 25 H 0.055 0.945 26 H -0.013 1.013 27 H 0.062 0.938 28 H 0.042 0.958 29 H 0.054 0.946 30 H 0.414 0.586 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.010 0.990 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.306 -19.897 14.229 25.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.251 4.251 3 Si 0.799 3.201 4 H -0.185 1.185 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.391 4.391 8 H 0.093 0.907 9 N -0.333 5.333 10 C 0.057 3.943 11 C -0.170 4.170 12 C 0.055 3.945 13 N -0.356 5.356 14 C 0.327 3.673 15 O -0.480 6.480 16 C -0.187 4.187 17 C -0.092 4.092 18 C -0.130 4.130 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.119 4.119 22 C -0.160 4.160 23 C 0.015 3.985 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.005 0.995 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.251 0.749 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.028 0.972 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.471 -19.603 13.917 24.656 hybrid contribution -0.156 1.407 -0.394 1.470 sum 5.315 -18.196 13.524 23.286 Atomic orbital electron populations 1.70218 1.06983 1.25833 1.55507 1.25910 0.96017 1.01911 1.01217 0.85156 0.78816 0.79532 0.76623 1.18482 1.22041 1.21895 1.19619 0.93063 0.85733 1.40735 0.90717 1.44356 1.35669 1.02756 1.50533 1.20441 0.87848 0.97253 0.88752 1.22302 1.00181 0.95930 0.98564 1.20686 0.98609 0.87657 0.87577 1.45984 1.10121 1.43395 1.36071 1.19307 0.84231 0.80782 0.83010 1.90762 1.24620 1.66710 1.65903 1.20865 0.98644 1.00706 0.98523 1.23082 0.97788 0.93503 0.94786 1.20664 0.99233 0.97208 0.95890 1.21649 0.93283 0.97655 1.03193 1.21606 1.00930 0.97528 0.95389 1.20466 0.90622 1.02070 0.98730 1.22130 0.96060 1.00460 0.97360 1.21045 0.97931 0.85579 0.93901 0.94177 0.92635 0.99460 0.91926 0.93964 0.92807 0.74853 0.88391 0.88913 0.88834 0.91516 0.89500 0.89417 0.91833 0.89192 0.90269 0.89019 0.90469 0.97170 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.55 11.20 21.65 0.24 -57.30 16 2 C -0.06 -3.16 4.92 84.86 0.42 -2.74 16 3 Si 0.97 45.28 29.59 68.60 2.03 47.31 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 6 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 7 C -0.26 -14.45 9.58 84.03 0.81 -13.65 16 8 H 0.08 3.93 7.89 -2.90 -0.02 3.91 16 9 N -0.61 -31.30 3.00 -699.10 -2.09 -33.39 16 10 C 0.18 9.56 5.30 86.36 0.46 10.02 16 11 C -0.13 -5.45 5.66 30.68 0.17 -5.28 16 12 C 0.16 5.71 2.41 45.03 0.11 5.82 16 13 N -0.71 -20.02 5.01 -445.95 -2.23 -22.26 16 14 C 0.54 17.00 7.68 86.57 0.66 17.66 16 15 O -0.60 -24.89 15.62 -4.09 -0.06 -24.95 16 16 C -0.18 -4.19 5.79 -18.29 -0.11 -4.30 16 17 C -0.07 -1.53 9.42 24.93 0.23 -1.29 16 18 C -0.09 -1.20 6.11 29.66 0.18 -1.02 16 19 C -0.12 -1.20 6.00 30.72 0.18 -1.02 16 20 C -0.12 -1.28 6.00 30.72 0.18 -1.09 16 21 C -0.08 -1.20 5.01 29.67 0.15 -1.05 16 22 C -0.12 -3.82 5.55 30.67 0.17 -3.65 16 23 C 0.14 5.80 6.52 86.36 0.56 6.36 16 24 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 25 H 0.06 3.24 6.06 -2.39 -0.01 3.22 16 26 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 27 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.05 2.25 7.58 -2.38 -0.02 2.23 16 30 H 0.41 8.65 6.81 -92.71 -0.63 8.02 16 31 H 0.10 2.57 7.17 -2.91 -0.02 2.55 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 0.69 8.12 -2.38 -0.02 0.67 16 35 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 37 H 0.06 0.75 8.12 -2.39 -0.02 0.73 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.09 7.21 -2.38 -0.02 1.07 16 40 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 42 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.07 2.70 7.93 -2.39 -0.02 2.68 16 Total: -1.00 -72.93 336.42 2.42 -70.50 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.35 Total: 15.32 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 4.19 Total: 4.77 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -4.08 Total: -112.95 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.06 Total: -24.95 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -72.93 2.42 -70.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614984076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.919 kcal (2) G-P(sol) polarization free energy of solvation -72.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds