Wall clock time and date at job start Tue Mar 31 2020 00:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00192 * 2 1 4 4 H 1.48507 * 109.47052 * 269.99864 * 3 2 1 5 5 H 1.48493 * 109.47300 * 29.99759 * 3 2 1 6 6 H 1.48498 * 109.47048 * 150.00000 * 3 2 1 7 7 C 1.37879 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00404 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99604 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47071 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47260 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47491 * 304.99894 * 11 10 9 13 13 N 1.46899 * 109.47135 * 64.99874 * 11 10 9 14 14 C 1.50703 * 109.47298 * 184.99633 * 11 10 9 15 15 O 1.21282 * 119.99805 * 260.00529 * 14 11 10 16 16 N 1.34777 * 119.99704 * 79.99623 * 14 11 10 17 17 C 1.47283 * 125.64603 * 180.02562 * 16 14 11 18 18 C 1.55810 * 106.75638 * 182.44289 * 17 16 14 19 19 H 1.08997 * 113.26995 * 212.24874 * 18 17 16 20 20 C 1.51895 * 104.69095 * 88.13416 * 18 17 16 21 21 C 1.49089 * 112.65580 * 210.05099 * 20 18 17 22 22 C 1.29189 * 124.68452 * 17.81162 * 21 20 18 23 23 C 1.49627 * 123.38995 * 358.07014 * 22 21 20 24 24 C 1.50026 * 113.24009 * 12.59895 * 23 22 21 25 25 H 1.08996 * 108.71561 * 200.54787 * 24 23 22 26 26 C 1.48034 * 125.65020 * 0.02887 * 16 14 11 27 27 H 0.97004 * 119.99882 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47561 * 59.99921 * 9 7 2 29 29 H 1.08996 * 109.47050 * 299.99489 * 9 7 2 30 30 H 1.08999 * 109.47370 * 59.99147 * 10 9 7 31 31 H 1.09005 * 109.46910 * 299.99719 * 10 9 7 32 32 H 1.00901 * 111.00543 * 59.99927 * 13 11 10 33 33 H 1.00895 * 111.00415 * 183.95326 * 13 11 10 34 34 H 1.09002 * 110.01127 * 301.78170 * 17 16 14 35 35 H 1.08999 * 110.01205 * 63.10754 * 17 16 14 36 36 H 1.09002 * 108.88010 * 89.27462 * 20 18 17 37 37 H 1.08995 * 108.88547 * 330.82758 * 20 18 17 38 38 H 1.08000 * 117.65536 * 197.84018 * 21 20 18 39 39 H 1.08001 * 118.30716 * 178.04220 * 22 21 20 40 40 H 1.09000 * 108.72326 * 251.63368 * 23 22 21 41 41 H 1.08996 * 108.72723 * 133.57217 * 23 22 21 42 42 H 1.09000 * 110.60198 * 321.83086 * 26 16 14 43 43 H 1.09004 * 110.59741 * 84.78271 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6622 0.0018 11 6 1.4801 -4.9871 0.0025 12 1 0.7876 -5.0065 0.8440 13 7 0.7289 -5.1194 -1.2530 14 6 2.4546 -6.1298 0.1275 15 8 2.7868 -6.7540 -0.8579 16 7 2.9570 -6.4580 1.3343 17 6 3.9135 -7.5463 1.5987 18 6 4.1464 -7.5752 3.1390 19 1 5.1528 -7.8888 3.4165 20 6 3.0585 -8.4891 3.6761 21 6 2.6359 -8.1277 5.0594 22 6 2.8661 -6.9889 5.6245 23 6 3.6335 -5.8845 4.9688 24 6 3.8496 -6.1043 3.5005 25 1 4.6899 -5.4912 3.1750 26 6 2.6389 -5.7843 2.6135 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6240 -2.5566 0.8903 30 1 2.8712 -3.6040 0.8922 31 1 2.8724 -3.6049 -0.8878 32 1 1.3490 -5.1043 -2.0488 33 1 0.1645 -5.9557 -1.2503 34 1 3.4974 -8.4975 1.2665 35 1 4.8535 -7.3503 1.0830 36 1 3.4285 -9.5144 3.6786 37 1 2.1918 -8.4307 3.0177 38 1 2.0993 -8.8712 5.6300 39 1 2.4844 -6.8256 6.6215 40 1 4.6046 -5.7960 5.4560 41 1 3.0891 -4.9503 5.1065 42 1 2.5443 -4.7083 2.4672 43 1 1.7270 -6.1952 3.0468 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691569305.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:08 Heat of formation + Delta-G solvation = -32.669297 kcal Electronic energy + Delta-G solvation = -22252.875322 eV Core-core repulsion = 19104.247517 eV Total energy + Delta-G solvation = -3148.627805 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.84754 -38.89410 -35.40226 -35.17245 -32.79411 -32.02179 -31.21750 -30.07786 -27.66365 -26.54670 -25.12955 -23.42095 -22.26230 -21.20653 -20.26736 -19.06594 -17.66289 -16.97299 -16.60951 -16.21546 -15.58066 -15.37922 -15.20504 -14.48271 -14.38099 -14.01705 -13.78027 -13.69396 -13.34300 -12.84185 -12.73440 -12.34062 -12.31118 -12.09977 -11.96864 -11.78150 -11.52140 -11.04397 -10.88701 -10.67615 -10.56466 -10.51422 -10.31512 -10.07673 -9.76819 -9.35808 -9.18940 -8.99676 -8.59226 -8.34446 -8.19340 -5.93359 -3.95525 2.09669 2.79759 3.05832 3.35080 3.41386 3.44055 4.09374 4.30960 4.41848 4.50293 4.82490 4.92149 4.98332 5.01024 5.06846 5.09566 5.18940 5.27592 5.42154 5.44756 5.53294 5.55288 5.59876 5.64944 5.71663 5.81285 5.85568 5.90246 5.95844 6.07631 6.26973 6.46537 6.47941 6.67740 6.74825 7.09388 7.41384 7.60747 7.76567 7.81390 7.96627 8.13793 8.30624 8.48961 9.12405 9.67626 11.17536 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018132 B = 0.004468 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.879714 B = 6265.768463 C = 7205.207891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.032 3.968 10 C -0.095 4.095 11 C 0.082 3.918 12 H 0.096 0.904 13 N -0.807 5.807 14 C 0.498 3.502 15 O -0.556 6.556 16 N -0.618 5.618 17 C 0.105 3.895 18 C -0.092 4.092 19 H 0.101 0.899 20 C -0.086 4.086 21 C -0.157 4.157 22 C -0.151 4.151 23 C -0.079 4.079 24 C -0.096 4.096 25 H 0.082 0.918 26 C 0.103 3.897 27 H 0.259 0.741 28 H 0.035 0.965 29 H 0.013 0.987 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.348 0.652 33 H 0.333 0.667 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.404 -16.841 11.146 21.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.560 4.560 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.133 4.133 11 C -0.033 4.033 12 H 0.114 0.886 13 N -0.334 5.334 14 C 0.286 3.714 15 O -0.434 6.434 16 N -0.353 5.353 17 C -0.018 4.018 18 C -0.111 4.111 19 H 0.119 0.881 20 C -0.123 4.123 21 C -0.175 4.175 22 C -0.169 4.169 23 C -0.117 4.117 24 C -0.115 4.115 25 H 0.100 0.900 26 C -0.020 4.020 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.162 0.838 33 H 0.145 0.855 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.019 -16.333 10.708 20.437 hybrid contribution 1.007 -0.046 0.003 1.008 sum 7.026 -16.379 10.711 20.793 Atomic orbital electron populations 1.69976 1.05947 1.26395 1.50843 1.24981 0.94784 0.99007 0.95473 0.86662 0.79820 0.83802 0.78088 1.20726 1.21286 1.20013 1.21272 0.92872 0.91306 1.50591 0.93020 1.19012 0.93522 0.89775 0.98198 1.21670 0.98879 0.92173 1.00606 1.21803 0.93421 0.93185 0.94929 0.88593 1.59020 1.26886 1.44231 1.03292 1.22525 0.82095 0.85752 0.81012 1.90643 1.61582 1.54699 1.36442 1.48798 1.45378 1.33710 1.07376 1.22403 0.93293 0.91002 0.95117 1.22208 0.99593 0.95456 0.93862 0.88105 1.20165 0.98373 0.99187 0.94603 1.21708 1.01406 0.97632 0.96746 1.21888 0.99878 0.95122 0.99985 1.19576 1.00560 0.98292 0.93246 1.21277 0.98800 0.96330 0.95136 0.89996 1.22322 0.97631 0.99123 0.82894 0.93105 0.94674 0.96892 0.92835 0.92881 0.83847 0.85493 0.91480 0.91897 0.91069 0.90567 0.88200 0.87592 0.90355 0.90091 0.88952 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.03 0.82 4.86 -27.88 -0.14 0.69 16 10 C -0.10 -1.96 4.65 -26.73 -0.12 -2.08 16 11 C 0.08 1.45 2.45 -68.87 -0.17 1.28 16 12 H 0.10 1.62 7.68 -51.93 -0.40 1.22 16 13 N -0.81 -14.15 8.44 -5.66 -0.05 -14.19 16 14 C 0.50 8.44 7.09 -10.98 -0.08 8.36 16 15 O -0.56 -10.89 16.58 5.56 0.09 -10.80 16 16 N -0.62 -8.56 3.33 -169.77 -0.56 -9.12 16 17 C 0.10 1.22 5.94 -2.12 -0.01 1.21 16 18 C -0.09 -0.82 3.89 -88.97 -0.35 -1.17 16 19 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 20 C -0.09 -0.73 4.61 -29.21 -0.13 -0.87 16 21 C -0.16 -1.29 9.76 -36.30 -0.35 -1.65 16 22 C -0.15 -1.23 9.88 -36.05 -0.36 -1.59 16 23 C -0.08 -0.66 5.59 -29.88 -0.17 -0.82 16 24 C -0.10 -0.93 2.64 -91.15 -0.24 -1.17 16 25 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 26 C 0.10 1.22 5.37 -2.96 -0.02 1.21 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.03 0.98 7.75 -51.93 -0.40 0.58 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 1.04 6.59 -51.93 -0.34 0.70 16 31 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.35 6.17 8.58 -39.29 -0.34 5.84 16 33 H 0.33 5.11 9.06 -39.29 -0.36 4.75 16 34 H 0.07 0.79 7.63 -51.93 -0.40 0.39 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.75 6.99 -51.93 -0.36 0.38 16 38 H 0.10 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.11 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.68 8.10 -51.93 -0.42 0.25 16 42 H 0.09 1.22 6.11 -51.93 -0.32 0.90 16 43 H 0.07 0.81 7.68 -51.93 -0.40 0.41 16 LS Contribution 339.12 15.07 5.11 5.11 Total: -1.00 -32.24 339.12 -9.32 -41.56 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -7.08 Total: 6.98 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -2.54 Total: -10.07 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.12 Total: -49.45 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.24 -9.32 -41.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691569305.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.893 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds