Wall clock time and date at job start Tue Mar 31 2020 00:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99253 * 2 1 4 4 H 1.48500 * 109.46796 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47355 * 299.99624 * 3 2 1 6 6 H 1.48496 * 109.47238 * 60.00118 * 3 2 1 7 7 C 1.38806 * 120.00539 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00155 * 197.37985 * 7 2 1 9 9 N 1.36940 * 119.99668 * 17.37728 * 7 2 1 10 10 C 1.46929 * 120.62632 * 207.68111 * 9 7 2 11 11 C 1.53191 * 108.77421 * 233.58721 * 10 9 7 12 12 C 1.53039 * 109.31304 * 305.36794 * 11 10 9 13 13 N 1.46498 * 109.46016 * 181.38474 * 12 11 10 14 14 C 1.34778 * 119.99913 * 154.99949 * 13 12 11 15 15 O 1.21277 * 120.00178 * 359.97438 * 14 13 12 16 16 C 1.50710 * 120.00105 * 180.02562 * 14 13 12 17 17 C 1.52999 * 119.29398 * 250.95362 * 16 14 13 18 18 C 1.53872 * 121.32967 * 179.11766 * 16 14 13 19 19 H 1.08994 * 121.33338 * 359.97438 * 18 16 14 20 20 C 1.54267 * 106.59336 * 221.93184 * 18 16 14 21 21 C 1.55239 * 104.23305 * 23.61182 * 20 18 16 22 22 C 1.54264 * 117.41125 * 45.28790 * 16 14 13 23 23 C 1.53037 * 109.53948 * 61.36567 * 12 11 10 24 24 C 1.46919 * 120.63333 * 27.66222 * 9 7 2 25 25 H 0.97000 * 120.00816 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.58703 * 113.80069 * 10 9 7 27 27 H 1.08994 * 109.58816 * 353.37502 * 10 9 7 28 28 H 1.08998 * 109.49794 * 185.41365 * 11 10 9 29 29 H 1.09001 * 109.49564 * 65.31992 * 11 10 9 30 30 H 1.09002 * 109.45821 * 301.35611 * 12 11 10 31 31 H 0.97002 * 120.00082 * 334.99980 * 13 12 11 32 32 H 1.08992 * 117.46500 * 355.35062 * 17 16 14 33 33 H 1.09003 * 117.45784 * 140.16146 * 17 16 14 34 34 H 1.09007 * 110.48436 * 142.28760 * 20 18 16 35 35 H 1.08996 * 110.49148 * 264.92875 * 20 18 16 36 36 H 1.08998 * 110.89646 * 203.78823 * 21 20 18 37 37 H 1.09004 * 110.76735 * 80.31688 * 21 20 18 38 38 H 1.09004 * 110.48872 * 235.04850 * 22 16 14 39 39 H 1.09006 * 110.48758 * 357.56130 * 22 16 14 40 40 H 1.09000 * 109.49744 * 58.58512 * 23 12 11 41 41 H 1.09004 * 109.49868 * 178.68497 * 23 12 11 42 42 H 1.09003 * 109.58750 * 246.19717 * 24 9 7 43 43 H 1.08999 * 109.58906 * 6.62167 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.7100 1.3466 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0533 -1.2232 0.2799 9 7 1.3725 -2.3611 -0.3532 10 6 1.8196 -3.6546 0.1815 11 6 2.0747 -4.6100 -0.9884 12 6 0.8191 -4.6901 -1.8596 13 7 1.0483 -5.6284 -2.9611 14 6 0.0045 -6.2487 -3.5462 15 8 -1.1244 -6.0303 -3.1606 16 6 0.2403 -7.2144 -4.6789 17 6 -0.1699 -6.8178 -6.0985 18 6 -0.9269 -7.9544 -5.3554 19 1 -1.9572 -7.8014 -5.0344 20 6 -0.4597 -9.4084 -5.5732 21 6 0.6538 -9.6146 -4.5113 22 6 1.3760 -8.2445 -4.5091 23 6 0.5011 -3.3051 -2.4277 24 6 0.2281 -2.3348 -1.2741 25 1 -0.4851 0.8400 -0.0004 26 1 1.0472 -4.0686 0.8297 27 1 2.7402 -3.5171 0.7485 28 1 2.3140 -5.6012 -0.6031 29 1 2.9086 -4.2401 -1.5850 30 1 -0.0201 -5.0363 -1.2563 31 1 1.9513 -5.8034 -3.2692 32 1 -0.6935 -5.8702 -6.2242 33 1 0.5012 -7.0950 -6.9115 34 1 -1.2823 -10.1030 -5.4028 35 1 -0.0560 -9.5330 -6.5780 36 1 1.3354 -10.4102 -4.8122 37 1 0.2209 -9.8248 -3.5333 38 1 2.0763 -8.1811 -5.3421 39 1 1.8947 -8.0881 -3.5632 40 1 1.3498 -2.9474 -3.0108 41 1 -0.3797 -3.3674 -3.0668 42 1 -0.6741 -2.6412 -0.7447 43 1 0.0987 -1.3266 -1.6675 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693228509.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:03 Heat of formation + Delta-G solvation = -0.473330 kcal Electronic energy + Delta-G solvation = -22157.463948 eV Core-core repulsion = 19010.232265 eV Total energy + Delta-G solvation = -3147.231683 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.50017 -38.51517 -37.02044 -34.38926 -32.13556 -31.77766 -30.13091 -29.61559 -28.38124 -25.19582 -23.52352 -22.48808 -22.18647 -21.34537 -20.44176 -19.63754 -18.73266 -17.24429 -16.64583 -15.91019 -15.29574 -14.99937 -14.61453 -14.27835 -13.72332 -13.59042 -13.50167 -13.38081 -13.24217 -12.96670 -12.54503 -12.38025 -11.92423 -11.50442 -11.38533 -11.31702 -11.20448 -11.10570 -10.91722 -10.73190 -10.48701 -10.37891 -10.20988 -10.05322 -9.89495 -9.74649 -9.71745 -9.34103 -8.67317 -8.40844 -6.68256 -5.77630 -3.20387 2.67891 3.30230 3.38119 3.45515 3.47655 3.51790 4.21179 4.39501 4.50152 4.55807 4.82293 4.98846 5.10795 5.20167 5.31147 5.32139 5.41279 5.43270 5.46999 5.53390 5.57938 5.64963 5.68899 5.79265 5.83942 5.87398 5.98405 6.09613 6.14755 6.25382 6.38684 6.45784 6.62814 6.66120 6.78602 6.93348 6.97202 7.38937 7.68631 7.79307 7.80601 8.45343 8.48641 9.21675 9.85191 10.41794 11.30867 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038768 B = 0.003599 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.073496 B = 7778.175359 C = 8013.996660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.254 4.254 8 H 0.067 0.933 9 N -0.593 5.593 10 C 0.149 3.851 11 C -0.138 4.138 12 C 0.150 3.850 13 N -0.720 5.720 14 C 0.551 3.449 15 O -0.541 6.541 16 C -0.176 4.176 17 C -0.124 4.124 18 C -0.131 4.131 19 H 0.120 0.880 20 C -0.096 4.096 21 C -0.123 4.123 22 C -0.087 4.087 23 C -0.146 4.146 24 C 0.174 3.826 25 H 0.254 0.746 26 H 0.020 0.980 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.395 0.605 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.020 0.980 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.222 -17.890 -11.569 21.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.021 3.979 11 C -0.178 4.178 12 C 0.047 3.953 13 N -0.369 5.369 14 C 0.337 3.663 15 O -0.418 6.418 16 C -0.179 4.179 17 C -0.162 4.162 18 C -0.150 4.150 19 H 0.138 0.862 20 C -0.134 4.134 21 C -0.160 4.160 22 C -0.125 4.125 23 C -0.186 4.186 24 C 0.047 3.953 25 H 0.064 0.936 26 H 0.038 0.962 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.228 0.772 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.038 0.962 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.309 -17.572 -11.228 20.980 hybrid contribution 0.827 0.899 -0.104 1.226 sum 3.136 -16.673 -11.333 20.402 Atomic orbital electron populations 1.70048 1.05272 1.25437 1.53752 1.25055 0.95275 0.98455 1.00897 0.86235 0.79331 0.83988 0.77274 1.20262 1.21565 1.21731 1.19221 0.92728 0.84835 1.41563 0.91572 1.44120 1.35882 1.01396 1.50178 1.20838 0.97950 0.86757 0.92327 1.22332 0.96720 0.99683 0.99093 1.21046 0.98671 0.88865 0.86700 1.46251 1.09111 1.44875 1.36649 1.19310 0.84888 0.79995 0.82111 1.90700 1.22870 1.64461 1.63786 1.22468 1.00200 1.00833 0.94389 1.23470 1.01677 0.99234 0.91775 1.23743 0.96841 0.91518 1.02889 0.86214 1.22044 0.98269 0.93956 0.99087 1.22741 0.97078 0.96643 0.99574 1.21938 0.95470 0.92634 1.02440 1.22555 1.00390 0.95157 1.00495 1.20760 0.88627 0.98200 0.87688 0.93636 0.96216 0.92333 0.92678 0.91858 0.90150 0.77184 0.87903 0.88064 0.90952 0.91146 0.91029 0.91128 0.90725 0.90881 0.92691 0.92965 0.96180 0.89226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.54 11.19 55.49 0.62 -25.92 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 21.76 29.59 -169.99 -5.03 16.73 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.25 -6.99 9.59 -15.06 -0.14 -7.13 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.36 16 9 N -0.59 -14.99 2.99 -172.33 -0.52 -15.51 16 10 C 0.15 3.09 6.52 -3.71 -0.02 3.07 16 11 C -0.14 -2.34 5.55 -26.61 -0.15 -2.49 16 12 C 0.15 2.70 2.41 -67.89 -0.16 2.53 16 13 N -0.72 -10.58 4.90 -53.76 -0.26 -10.84 16 14 C 0.55 8.62 7.37 -10.98 -0.08 8.54 16 15 O -0.54 -10.80 16.45 5.56 0.09 -10.71 16 16 C -0.18 -2.02 2.60 -154.54 -0.40 -2.42 16 17 C -0.12 -1.25 10.00 -25.42 -0.25 -1.50 16 18 C -0.13 -1.39 6.65 -88.19 -0.59 -1.98 16 19 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16 20 C -0.10 -0.77 6.65 -24.88 -0.17 -0.93 16 21 C -0.12 -0.98 6.93 -24.55 -0.17 -1.15 16 22 C -0.09 -0.77 6.17 -25.08 -0.15 -0.92 16 23 C -0.15 -2.99 5.65 -26.61 -0.15 -3.14 16 24 C 0.17 4.30 5.31 -3.71 -0.02 4.28 16 25 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 31 H 0.39 4.69 8.12 -40.82 -0.33 4.36 16 32 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.64 7.60 -51.93 -0.39 0.25 16 40 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 2.47 6.04 -51.93 -0.31 2.16 16 LS Contribution 340.20 15.07 5.13 5.13 Total: -1.00 -31.86 340.20 -9.83 -41.69 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.31 Total: 2.69 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -2.55 Total: -3.26 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.16 Total: -52.27 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.86 -9.83 -41.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693228509.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.221 kcal (2) G-P(sol) polarization free energy of solvation -31.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds