Wall clock time and date at job start Tue Mar 31 2020 00:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 119.99253 * 2 1 4 4 H 1.48500 * 109.46796 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47355 * 299.99624 * 3 2 1 6 6 H 1.48496 * 109.47238 * 60.00118 * 3 2 1 7 7 C 1.38806 * 120.00539 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00155 * 197.37985 * 7 2 1 9 9 N 1.36940 * 119.99668 * 17.37728 * 7 2 1 10 10 C 1.46929 * 120.62632 * 207.68111 * 9 7 2 11 11 C 1.53191 * 108.77421 * 233.58721 * 10 9 7 12 12 C 1.53039 * 109.31304 * 305.36794 * 11 10 9 13 13 N 1.46498 * 109.46016 * 181.38474 * 12 11 10 14 14 C 1.34778 * 119.99913 * 154.99949 * 13 12 11 15 15 O 1.21277 * 120.00178 * 359.97438 * 14 13 12 16 16 C 1.50710 * 120.00105 * 180.02562 * 14 13 12 17 17 C 1.52999 * 119.29398 * 250.95362 * 16 14 13 18 18 C 1.53872 * 121.32967 * 179.11766 * 16 14 13 19 19 H 1.08994 * 121.33338 * 359.97438 * 18 16 14 20 20 C 1.54267 * 106.59336 * 221.93184 * 18 16 14 21 21 C 1.55239 * 104.23305 * 23.61182 * 20 18 16 22 22 C 1.54264 * 117.41125 * 45.28790 * 16 14 13 23 23 C 1.53037 * 109.53948 * 61.36567 * 12 11 10 24 24 C 1.46919 * 120.63333 * 27.66222 * 9 7 2 25 25 H 0.97000 * 120.00816 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.58703 * 113.80069 * 10 9 7 27 27 H 1.08994 * 109.58816 * 353.37502 * 10 9 7 28 28 H 1.08998 * 109.49794 * 185.41365 * 11 10 9 29 29 H 1.09001 * 109.49564 * 65.31992 * 11 10 9 30 30 H 1.09002 * 109.45821 * 301.35611 * 12 11 10 31 31 H 0.97002 * 120.00082 * 334.99980 * 13 12 11 32 32 H 1.08992 * 117.46500 * 355.35062 * 17 16 14 33 33 H 1.09003 * 117.45784 * 140.16146 * 17 16 14 34 34 H 1.09007 * 110.48436 * 142.28760 * 20 18 16 35 35 H 1.08996 * 110.49148 * 264.92875 * 20 18 16 36 36 H 1.08998 * 110.89646 * 203.78823 * 21 20 18 37 37 H 1.09004 * 110.76735 * 80.31688 * 21 20 18 38 38 H 1.09004 * 110.48872 * 235.04850 * 22 16 14 39 39 H 1.09006 * 110.48758 * 357.56130 * 22 16 14 40 40 H 1.09000 * 109.49744 * 58.58512 * 23 12 11 41 41 H 1.09004 * 109.49868 * 178.68497 * 23 12 11 42 42 H 1.09003 * 109.58750 * 246.19717 * 24 9 7 43 43 H 1.08999 * 109.58906 * 6.62167 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.7100 1.3466 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0533 -1.2232 0.2799 9 7 1.3725 -2.3611 -0.3532 10 6 1.8196 -3.6546 0.1815 11 6 2.0747 -4.6100 -0.9884 12 6 0.8191 -4.6901 -1.8596 13 7 1.0483 -5.6284 -2.9611 14 6 0.0045 -6.2487 -3.5462 15 8 -1.1244 -6.0303 -3.1606 16 6 0.2403 -7.2144 -4.6789 17 6 -0.1699 -6.8178 -6.0985 18 6 -0.9269 -7.9544 -5.3554 19 1 -1.9572 -7.8014 -5.0344 20 6 -0.4597 -9.4084 -5.5732 21 6 0.6538 -9.6146 -4.5113 22 6 1.3760 -8.2445 -4.5091 23 6 0.5011 -3.3051 -2.4277 24 6 0.2281 -2.3348 -1.2741 25 1 -0.4851 0.8400 -0.0004 26 1 1.0472 -4.0686 0.8297 27 1 2.7402 -3.5171 0.7485 28 1 2.3140 -5.6012 -0.6031 29 1 2.9086 -4.2401 -1.5850 30 1 -0.0201 -5.0363 -1.2563 31 1 1.9513 -5.8034 -3.2692 32 1 -0.6935 -5.8702 -6.2242 33 1 0.5012 -7.0950 -6.9115 34 1 -1.2823 -10.1030 -5.4028 35 1 -0.0560 -9.5330 -6.5780 36 1 1.3354 -10.4102 -4.8122 37 1 0.2209 -9.8248 -3.5333 38 1 2.0763 -8.1811 -5.3421 39 1 1.8947 -8.0881 -3.5632 40 1 1.3498 -2.9474 -3.0108 41 1 -0.3797 -3.3674 -3.0668 42 1 -0.6741 -2.6412 -0.7447 43 1 0.0987 -1.3266 -1.6675 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693228509.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:02 Heat of formation + Delta-G solvation = -20.037555 kcal Electronic energy + Delta-G solvation = -22158.312317 eV Core-core repulsion = 19010.232265 eV Total energy + Delta-G solvation = -3148.080052 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.56303 -39.77778 -38.53313 -36.04507 -33.94777 -32.49174 -31.86234 -31.33683 -29.25244 -27.01370 -24.78780 -23.96305 -23.52162 -22.64814 -21.24176 -21.20779 -20.00191 -18.80877 -18.04173 -17.28705 -16.80344 -16.21250 -15.99519 -15.63965 -15.39021 -15.21029 -14.84691 -14.50573 -14.25960 -14.14148 -14.02755 -13.90599 -13.22729 -13.06798 -12.78832 -12.69642 -12.60608 -12.16765 -12.04750 -12.02295 -11.99394 -11.89574 -11.81465 -11.57420 -11.41639 -11.31703 -10.68826 -10.62174 -10.61212 -10.03153 -8.74922 -7.89297 -5.35742 1.46370 1.47871 1.51065 1.59008 2.12757 2.50367 2.60969 3.26582 3.48797 3.59641 3.62485 3.73304 3.84751 3.94187 4.04360 4.26198 4.28792 4.42438 4.43514 4.50907 4.62484 4.66723 4.74441 4.76130 4.81278 4.83929 4.97997 4.99488 5.02787 5.05443 5.09762 5.18180 5.21277 5.27657 5.29265 5.42227 5.48159 5.53120 5.61585 5.66093 6.36142 6.59373 7.10753 7.27644 7.81571 8.34584 9.18037 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038768 B = 0.003599 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.073496 B = 7778.175359 C = 8013.996660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.055 4.055 3 Si 0.971 3.029 4 H -0.261 1.261 5 H -0.292 1.292 6 H -0.294 1.294 7 C -0.262 4.262 8 H 0.076 0.924 9 N -0.610 5.610 10 C 0.141 3.859 11 C -0.120 4.120 12 C 0.161 3.839 13 N -0.704 5.704 14 C 0.545 3.455 15 O -0.594 6.594 16 C -0.186 4.186 17 C -0.112 4.112 18 C -0.140 4.140 19 H 0.093 0.907 20 C -0.089 4.089 21 C -0.122 4.122 22 C -0.082 4.082 23 C -0.129 4.129 24 C 0.183 3.817 25 H 0.249 0.751 26 H 0.010 0.990 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.414 0.586 32 H 0.085 0.915 33 H 0.135 0.865 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.054 0.946 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.041 0.959 42 H -0.013 1.013 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.236 -19.892 -13.183 24.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.250 4.250 3 Si 0.799 3.201 4 H -0.185 1.185 5 H -0.219 1.219 6 H -0.221 1.221 7 C -0.392 4.392 8 H 0.093 0.907 9 N -0.333 5.333 10 C 0.015 3.985 11 C -0.160 4.160 12 C 0.056 3.944 13 N -0.355 5.355 14 C 0.333 3.667 15 O -0.474 6.474 16 C -0.189 4.189 17 C -0.149 4.149 18 C -0.158 4.158 19 H 0.111 0.889 20 C -0.127 4.127 21 C -0.159 4.159 22 C -0.119 4.119 23 C -0.169 4.169 24 C 0.057 3.943 25 H 0.058 0.942 26 H 0.028 0.972 27 H 0.088 0.912 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.251 0.749 32 H 0.104 0.896 33 H 0.153 0.847 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.073 0.927 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.005 0.995 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.385 -19.619 -12.856 24.066 hybrid contribution -0.187 1.498 0.444 1.574 sum 5.197 -18.121 -12.412 22.571 Atomic orbital electron populations 1.70222 1.06980 1.25838 1.55509 1.25892 0.96003 1.01890 1.01263 0.85158 0.78820 0.79545 0.76626 1.18489 1.21873 1.22067 1.19625 0.93237 0.85796 1.40513 0.90684 1.44366 1.35621 1.02626 1.50701 1.21050 0.97893 0.85571 0.93976 1.22131 0.96067 1.00473 0.97307 1.20668 0.98540 0.87760 0.87447 1.45974 1.10156 1.43743 1.35589 1.20127 0.84025 0.80005 0.82545 1.90681 1.25017 1.66235 1.65509 1.22515 1.02244 1.00813 0.93306 1.23572 1.01402 0.98298 0.91633 1.23854 0.95522 0.93609 1.02850 0.88875 1.22067 0.98530 0.91717 1.00352 1.22758 0.97313 0.97013 0.98829 1.22007 0.94698 0.91640 1.03551 1.22295 1.00156 0.95945 0.98544 1.20454 0.87801 0.97366 0.88712 0.94177 0.97187 0.91168 0.89032 0.90469 0.92937 0.74900 0.89610 0.84732 0.90639 0.88924 0.88489 0.92670 0.88120 0.90879 0.91879 0.94046 0.99512 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.47 11.19 21.65 0.24 -57.22 16 2 C -0.06 -3.15 4.91 84.86 0.42 -2.73 16 3 Si 0.97 45.22 29.59 68.60 2.03 47.25 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 7 C -0.26 -14.44 9.59 84.03 0.81 -13.64 16 8 H 0.08 3.94 7.89 -2.91 -0.02 3.92 16 9 N -0.61 -31.23 2.99 -699.13 -2.09 -33.32 16 10 C 0.14 5.76 6.52 86.36 0.56 6.33 16 11 C -0.12 -3.78 5.55 30.67 0.17 -3.61 16 12 C 0.16 5.69 2.41 45.02 0.11 5.80 16 13 N -0.70 -19.63 4.90 -442.40 -2.17 -21.80 16 14 C 0.54 16.84 7.37 87.66 0.65 17.49 16 15 O -0.59 -24.61 16.45 -3.02 -0.05 -24.66 16 16 C -0.19 -3.93 2.60 -52.20 -0.14 -4.07 16 17 C -0.11 -2.01 10.00 31.45 0.31 -1.70 16 18 C -0.14 -2.79 6.65 -9.22 -0.06 -2.86 16 19 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 20 C -0.09 -1.17 6.65 31.79 0.21 -0.96 16 21 C -0.12 -1.53 6.93 32.01 0.22 -1.31 16 22 C -0.08 -1.13 6.17 31.67 0.20 -0.93 16 23 C -0.13 -5.40 5.65 30.67 0.17 -5.23 16 24 C 0.18 9.52 5.31 86.36 0.46 9.98 16 25 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 26 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.07 2.69 7.93 -2.39 -0.02 2.67 16 28 H 0.09 2.28 8.14 -2.39 -0.02 2.27 16 29 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 31 H 0.41 8.50 8.12 -92.71 -0.75 7.75 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.07 1.02 7.60 -2.38 -0.02 1.00 16 40 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 42 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 43 H 0.06 3.28 6.04 -2.39 -0.01 3.26 16 Total: -1.00 -72.96 340.20 2.28 -70.68 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.23 Total: 16.53 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 4.09 Total: 2.56 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -4.02 Total: -112.35 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.05 Total: -24.66 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -72.96 2.28 -70.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693228509.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.644 kcal (2) G-P(sol) polarization free energy of solvation -72.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds