Wall clock time and date at job start Tue Mar 31 2020 00:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99724 * 2 1 4 4 H 1.48499 * 109.47084 * 272.95806 * 3 2 1 5 5 H 1.48493 * 109.47117 * 32.95485 * 3 2 1 6 6 H 1.48495 * 109.46871 * 152.95928 * 3 2 1 7 7 C 1.38805 * 120.00214 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00359 * 339.34687 * 7 2 1 9 9 N 1.36942 * 120.00238 * 159.34567 * 7 2 1 10 10 C 1.46923 * 120.62973 * 332.59801 * 9 7 2 11 11 C 1.53189 * 108.89141 * 233.67281 * 10 9 7 12 12 C 1.53031 * 109.31453 * 305.29105 * 11 10 9 13 13 N 1.46500 * 109.46568 * 181.38827 * 12 11 10 14 14 C 1.34767 * 120.00581 * 154.99982 * 13 12 11 15 15 O 1.21618 * 119.99754 * 0.02562 * 14 13 12 16 16 C 1.47105 * 120.00282 * 180.02562 * 14 13 12 17 17 C 1.32993 * 120.00007 * 180.02562 * 16 14 13 18 18 C 1.51447 * 126.34135 * 359.68446 * 17 16 14 19 19 C 1.54286 * 106.85271 * 180.24489 * 18 17 16 20 20 C 1.54987 * 103.65789 * 23.48117 * 19 18 17 21 21 C 1.51843 * 126.34417 * 179.97438 * 17 16 14 22 22 C 1.53041 * 109.53660 * 61.36563 * 12 11 10 23 23 C 1.47204 * 120.81301 * 152.73301 * 9 7 2 24 24 H 0.96996 * 120.00339 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.58973 * 113.81167 * 10 9 7 26 26 H 1.09002 * 109.58743 * 353.52968 * 10 9 7 27 27 H 1.09002 * 109.50201 * 65.24581 * 11 10 9 28 28 H 1.09000 * 109.49525 * 185.34069 * 11 10 9 29 29 H 1.09006 * 109.46350 * 301.35037 * 12 11 10 30 30 H 0.97005 * 119.99642 * 334.99752 * 13 12 11 31 31 H 1.07997 * 119.99903 * 359.97438 * 16 14 13 32 32 H 1.08999 * 109.98839 * 299.72666 * 18 17 16 33 33 H 1.09002 * 109.98641 * 61.03143 * 18 17 16 34 34 H 1.08997 * 110.79217 * 264.85727 * 19 18 17 35 35 H 1.09000 * 110.43006 * 141.93220 * 19 18 17 36 36 H 1.08992 * 110.83058 * 204.48873 * 20 19 18 37 37 H 1.09004 * 110.82988 * 80.91216 * 20 19 18 38 38 H 1.09005 * 110.44137 * 274.92911 * 21 17 16 39 39 H 1.09008 * 110.43894 * 37.32022 * 21 17 16 40 40 H 1.09001 * 109.49972 * 58.59249 * 22 12 11 41 41 H 1.09007 * 109.49670 * 178.65250 * 22 12 11 42 42 H 1.08991 * 109.53869 * 6.53725 * 23 9 7 43 43 H 1.09004 * 109.67659 * 246.23026 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4351 2.0826 -1.3982 5 1 1.4803 2.6338 0.7616 6 1 3.5776 1.4230 0.6365 7 6 2.0103 -1.2021 -0.0005 8 1 1.5224 -2.1076 0.3290 9 7 3.3137 -1.2400 -0.4189 10 6 3.8172 -0.2587 -1.3895 11 6 4.4610 -1.0058 -2.5617 12 6 5.5297 -1.9617 -2.0269 13 7 6.1705 -2.6539 -3.1479 14 6 7.4216 -3.1370 -3.0152 15 8 8.0185 -2.9987 -1.9646 16 6 8.0653 -3.8314 -4.1409 17 6 9.2997 -4.3086 -4.0097 18 6 10.1726 -4.2124 -2.7759 19 6 11.5082 -4.9052 -3.1177 20 6 11.5758 -4.8268 -4.6641 21 6 10.0973 -5.0453 -5.0712 22 6 4.8787 -2.9893 -1.0983 23 6 4.2396 -2.2648 0.0905 24 1 -0.4850 0.8400 -0.0004 25 1 4.5597 0.3803 -0.9115 26 1 2.9909 0.3513 -1.7546 27 1 3.6982 -1.5740 -3.0940 28 1 4.9215 -0.2887 -3.2412 29 1 6.2792 -1.3958 -1.4736 30 1 5.6943 -2.7645 -3.9857 31 1 7.5351 -3.9545 -5.0737 32 1 10.3472 -3.1665 -2.5236 33 1 9.6939 -4.7227 -1.9401 34 1 11.5011 -5.9437 -2.7868 35 1 12.3424 -4.3652 -2.6700 36 1 12.2091 -5.6181 -5.0650 37 1 11.9265 -3.8467 -4.9876 38 1 9.8527 -6.1075 -5.0624 39 1 9.9047 -4.6194 -6.0560 40 1 4.1119 -3.5389 -1.6443 41 1 5.6365 -3.6845 -0.7367 42 1 3.6905 -2.9803 0.7024 43 1 5.0168 -1.7915 0.6906 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730503974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:02 Heat of formation + Delta-G solvation = -14.194492 kcal Electronic energy + Delta-G solvation = -21729.498335 eV Core-core repulsion = 18581.671657 eV Total energy + Delta-G solvation = -3147.826677 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.90688 -38.33428 -37.31311 -34.48093 -32.35944 -31.77830 -30.40668 -29.97934 -29.05546 -26.04865 -24.54122 -22.90598 -21.96988 -21.12282 -20.60521 -19.71705 -18.53400 -17.02200 -16.64458 -16.05565 -15.83677 -15.25099 -14.77804 -14.47080 -14.13520 -13.81090 -13.74121 -13.51961 -13.11785 -12.93051 -12.68562 -12.42301 -12.20468 -11.95800 -11.76343 -11.52291 -11.42940 -11.25574 -10.96077 -10.89094 -10.80576 -10.52898 -10.25872 -10.11716 -9.81861 -9.55372 -9.43951 -9.29936 -8.68307 -8.62003 -6.98081 -5.94319 -3.29958 1.31476 3.31916 3.35430 3.40263 3.49767 3.53458 4.20238 4.37574 4.53614 4.71401 4.85206 4.96335 4.99727 5.15185 5.18479 5.28245 5.29694 5.35385 5.42814 5.44679 5.55880 5.67603 5.70733 5.78136 5.84595 5.94332 6.05216 6.06367 6.14892 6.18684 6.27027 6.32382 6.40258 6.44406 6.59943 6.66477 6.67826 6.82178 6.94819 7.73537 7.96494 8.33498 8.42241 8.94317 9.72526 10.10789 11.21706 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.045778 B = 0.003255 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.500820 B = 8599.908237 C = 8633.858859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.022 3.978 3 Si 0.882 3.118 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.258 4.258 8 H 0.086 0.914 9 N -0.607 5.607 10 C 0.129 3.871 11 C -0.140 4.140 12 C 0.152 3.848 13 N -0.722 5.722 14 C 0.544 3.456 15 O -0.545 6.545 16 C -0.220 4.220 17 C -0.034 4.034 18 C -0.093 4.093 19 C -0.130 4.130 20 C -0.124 4.124 21 C -0.102 4.102 22 C -0.140 4.140 23 C 0.150 3.850 24 H 0.262 0.738 25 H 0.027 0.973 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.397 0.603 31 H 0.127 0.873 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.385 -9.196 -11.782 25.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.386 4.386 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.003 3.997 11 C -0.180 4.180 12 C 0.048 3.952 13 N -0.371 5.371 14 C 0.333 3.667 15 O -0.425 6.425 16 C -0.241 4.241 17 C -0.036 4.036 18 C -0.130 4.130 19 C -0.168 4.168 20 C -0.162 4.162 21 C -0.138 4.138 22 C -0.180 4.180 23 C 0.024 3.976 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.230 0.770 31 H 0.145 0.855 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 20.624 -8.997 -10.978 25.036 hybrid contribution 0.006 0.932 -0.567 1.091 sum 20.630 -8.065 -11.545 24.979 Atomic orbital electron populations 1.69837 1.05718 1.26542 1.53120 1.25282 0.95238 0.97564 0.99562 0.86963 0.80140 0.84672 0.77007 1.21638 1.23132 1.19475 1.18929 0.84892 0.94787 1.40022 0.89650 1.44464 1.08717 1.33299 1.46570 1.21299 0.97277 0.92060 0.89087 1.22337 0.97510 0.98447 0.99728 1.20958 0.94261 0.93112 0.86892 1.46161 1.15492 1.58445 1.17017 1.18460 0.81436 0.78844 0.87921 1.90765 1.63976 1.58356 1.29384 1.21980 0.96384 1.06129 0.99601 1.22910 0.93005 0.91232 0.96438 1.21303 0.93436 1.02253 0.96010 1.22488 0.97762 1.00899 0.95633 1.22525 0.95487 1.02012 0.96140 1.21604 0.94578 1.00353 0.97310 1.22366 0.99349 0.97995 0.98322 1.20940 0.92263 0.91326 0.93078 0.92775 0.95524 0.90568 0.91175 0.92292 0.90003 0.76976 0.85525 0.89526 0.89586 0.91407 0.91280 0.91083 0.91145 0.89552 0.90508 0.91911 0.92284 0.91657 0.95671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.93 13.97 55.49 0.78 -27.16 16 2 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 3 Si 0.88 22.48 24.35 -169.99 -4.14 18.34 16 4 H -0.29 -7.04 6.62 56.52 0.37 -6.66 16 5 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 6 H -0.27 -6.81 6.63 56.52 0.37 -6.44 16 7 C -0.26 -7.25 10.05 -15.06 -0.15 -7.40 16 8 H 0.09 2.56 8.06 -52.48 -0.42 2.13 16 9 N -0.61 -14.57 2.78 -172.10 -0.48 -15.04 16 10 C 0.13 2.81 4.20 -3.71 -0.02 2.80 16 11 C -0.14 -2.43 5.55 -26.62 -0.15 -2.57 16 12 C 0.15 2.51 2.41 -67.89 -0.16 2.35 16 13 N -0.72 -9.83 5.07 -54.95 -0.28 -10.11 16 14 C 0.54 7.79 7.73 -12.67 -0.10 7.69 16 15 O -0.55 -9.55 13.77 5.26 0.07 -9.48 16 16 C -0.22 -2.39 9.94 -37.80 -0.38 -2.77 16 17 C -0.03 -0.34 6.15 -100.24 -0.62 -0.96 16 18 C -0.09 -1.00 4.81 -26.84 -0.13 -1.13 16 19 C -0.13 -1.02 6.88 -25.01 -0.17 -1.19 16 20 C -0.12 -0.82 6.94 -24.68 -0.17 -0.99 16 21 C -0.10 -0.73 6.64 -26.31 -0.17 -0.90 16 22 C -0.14 -2.47 5.65 -26.61 -0.15 -2.62 16 23 C 0.15 3.08 6.53 -3.56 -0.02 3.06 16 24 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 25 H 0.03 0.58 7.08 -51.93 -0.37 0.22 16 26 H 0.08 1.80 4.49 -51.93 -0.23 1.57 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 1.51 7.58 -51.93 -0.39 1.11 16 30 H 0.40 4.32 8.59 -40.82 -0.35 3.97 16 31 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.09 1.07 7.67 -51.93 -0.40 0.67 16 33 H 0.09 1.06 7.68 -51.93 -0.40 0.66 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 42 H 0.06 1.33 7.94 -51.93 -0.41 0.92 16 43 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 334.02 15.07 5.03 5.03 Total: -1.00 -32.21 334.02 -8.74 -40.94 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -7.24 Total: 1.57 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -2.48 Total: -4.10 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: 0.02 Total: -52.31 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.07 Total: -9.48 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.14 Total: 18.34 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.21 -8.74 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730503974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.747 kcal (2) G-P(sol) polarization free energy of solvation -32.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds