Wall clock time and date at job start Tue Mar 31 2020 00:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 119.99724 * 2 1 4 4 H 1.48499 * 109.47084 * 272.95806 * 3 2 1 5 5 H 1.48493 * 109.47117 * 32.95485 * 3 2 1 6 6 H 1.48495 * 109.46871 * 152.95928 * 3 2 1 7 7 C 1.38805 * 120.00214 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00359 * 339.34687 * 7 2 1 9 9 N 1.36942 * 120.00238 * 159.34567 * 7 2 1 10 10 C 1.46923 * 120.62973 * 332.59801 * 9 7 2 11 11 C 1.53189 * 108.89141 * 233.67281 * 10 9 7 12 12 C 1.53031 * 109.31453 * 305.29105 * 11 10 9 13 13 N 1.46500 * 109.46568 * 181.38827 * 12 11 10 14 14 C 1.34767 * 120.00581 * 154.99982 * 13 12 11 15 15 O 1.21618 * 119.99754 * 0.02562 * 14 13 12 16 16 C 1.47105 * 120.00282 * 180.02562 * 14 13 12 17 17 C 1.32993 * 120.00007 * 180.02562 * 16 14 13 18 18 C 1.51447 * 126.34135 * 359.68446 * 17 16 14 19 19 C 1.54286 * 106.85271 * 180.24489 * 18 17 16 20 20 C 1.54987 * 103.65789 * 23.48117 * 19 18 17 21 21 C 1.51843 * 126.34417 * 179.97438 * 17 16 14 22 22 C 1.53041 * 109.53660 * 61.36563 * 12 11 10 23 23 C 1.47204 * 120.81301 * 152.73301 * 9 7 2 24 24 H 0.96996 * 120.00339 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.58973 * 113.81167 * 10 9 7 26 26 H 1.09002 * 109.58743 * 353.52968 * 10 9 7 27 27 H 1.09002 * 109.50201 * 65.24581 * 11 10 9 28 28 H 1.09000 * 109.49525 * 185.34069 * 11 10 9 29 29 H 1.09006 * 109.46350 * 301.35037 * 12 11 10 30 30 H 0.97005 * 119.99642 * 334.99752 * 13 12 11 31 31 H 1.07997 * 119.99903 * 359.97438 * 16 14 13 32 32 H 1.08999 * 109.98839 * 299.72666 * 18 17 16 33 33 H 1.09002 * 109.98641 * 61.03143 * 18 17 16 34 34 H 1.08997 * 110.79217 * 264.85727 * 19 18 17 35 35 H 1.09000 * 110.43006 * 141.93220 * 19 18 17 36 36 H 1.08992 * 110.83058 * 204.48873 * 20 19 18 37 37 H 1.09004 * 110.82988 * 80.91216 * 20 19 18 38 38 H 1.09005 * 110.44137 * 274.92911 * 21 17 16 39 39 H 1.09008 * 110.43894 * 37.32022 * 21 17 16 40 40 H 1.09001 * 109.49972 * 58.59249 * 22 12 11 41 41 H 1.09007 * 109.49670 * 178.65250 * 22 12 11 42 42 H 1.08991 * 109.53869 * 6.53725 * 23 9 7 43 43 H 1.09004 * 109.67659 * 246.23026 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4351 2.0826 -1.3982 5 1 1.4803 2.6338 0.7616 6 1 3.5776 1.4230 0.6365 7 6 2.0103 -1.2021 -0.0005 8 1 1.5224 -2.1076 0.3290 9 7 3.3137 -1.2400 -0.4189 10 6 3.8172 -0.2587 -1.3895 11 6 4.4610 -1.0058 -2.5617 12 6 5.5297 -1.9617 -2.0269 13 7 6.1705 -2.6539 -3.1479 14 6 7.4216 -3.1370 -3.0152 15 8 8.0185 -2.9987 -1.9646 16 6 8.0653 -3.8314 -4.1409 17 6 9.2997 -4.3086 -4.0097 18 6 10.1726 -4.2124 -2.7759 19 6 11.5082 -4.9052 -3.1177 20 6 11.5758 -4.8268 -4.6641 21 6 10.0973 -5.0453 -5.0712 22 6 4.8787 -2.9893 -1.0983 23 6 4.2396 -2.2648 0.0905 24 1 -0.4850 0.8400 -0.0004 25 1 4.5597 0.3803 -0.9115 26 1 2.9909 0.3513 -1.7546 27 1 3.6982 -1.5740 -3.0940 28 1 4.9215 -0.2887 -3.2412 29 1 6.2792 -1.3958 -1.4736 30 1 5.6943 -2.7645 -3.9857 31 1 7.5351 -3.9545 -5.0737 32 1 10.3472 -3.1665 -2.5236 33 1 9.6939 -4.7227 -1.9401 34 1 11.5011 -5.9437 -2.7868 35 1 12.3424 -4.3652 -2.6700 36 1 12.2091 -5.6181 -5.0650 37 1 11.9265 -3.8467 -4.9876 38 1 9.8527 -6.1075 -5.0624 39 1 9.9047 -4.6194 -6.0560 40 1 4.1119 -3.5389 -1.6443 41 1 5.6365 -3.6845 -0.7367 42 1 3.6905 -2.9803 0.7024 43 1 5.0168 -1.7915 0.6906 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730503974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:01 Heat of formation + Delta-G solvation = -35.036944 kcal Electronic energy + Delta-G solvation = -21730.402131 eV Core-core repulsion = 18581.671657 eV Total energy + Delta-G solvation = -3148.730474 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.05268 -39.47221 -38.49370 -36.00697 -34.09200 -32.87001 -32.00061 -31.55973 -29.70756 -27.33781 -25.96551 -24.51776 -23.56482 -21.93091 -21.56126 -21.25522 -19.58474 -18.75223 -17.81962 -17.44687 -16.80224 -16.56278 -16.00075 -15.80381 -15.65198 -15.35446 -14.99331 -14.69623 -14.50582 -14.19513 -14.16226 -13.85271 -13.49543 -13.43457 -12.90514 -12.61327 -12.58863 -12.32382 -12.25038 -12.04211 -11.98729 -11.91020 -11.78823 -11.57823 -11.47878 -11.36435 -10.83142 -10.60804 -10.23796 -9.81943 -8.98901 -8.17622 -5.50201 0.44350 1.28381 1.41675 1.50645 2.25866 2.36569 2.40290 3.03699 3.29597 3.48148 3.74884 3.76862 3.96432 4.08012 4.16382 4.20896 4.29327 4.31360 4.46223 4.48364 4.51599 4.60929 4.69009 4.72366 4.85548 4.89354 4.92417 4.99711 5.02506 5.04582 5.09345 5.13815 5.14883 5.21639 5.38222 5.40571 5.50903 5.54952 5.61692 5.84752 6.11180 6.69256 6.88246 7.35200 7.59047 8.00367 9.02195 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.045778 B = 0.003255 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.500820 B = 8599.908237 C = 8633.858859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.033 4.033 3 Si 0.945 3.055 4 H -0.268 1.268 5 H -0.310 1.310 6 H -0.266 1.266 7 C -0.249 4.249 8 H 0.053 0.947 9 N -0.619 5.619 10 C 0.121 3.879 11 C -0.127 4.127 12 C 0.161 3.839 13 N -0.711 5.711 14 C 0.538 3.462 15 O -0.585 6.585 16 C -0.230 4.230 17 C -0.032 4.032 18 C -0.098 4.098 19 C -0.127 4.127 20 C -0.120 4.120 21 C -0.096 4.096 22 C -0.127 4.127 23 C 0.147 3.853 24 H 0.263 0.737 25 H 0.031 0.969 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.413 0.587 31 H 0.159 0.841 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.837 -9.622 -14.402 28.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.228 4.228 3 Si 0.774 3.226 4 H -0.194 1.194 5 H -0.239 1.239 6 H -0.191 1.191 7 C -0.379 4.379 8 H 0.071 0.929 9 N -0.344 5.344 10 C -0.004 4.004 11 C -0.167 4.167 12 C 0.056 3.944 13 N -0.362 5.362 14 C 0.329 3.671 15 O -0.467 6.467 16 C -0.250 4.250 17 C -0.034 4.034 18 C -0.135 4.135 19 C -0.165 4.165 20 C -0.158 4.158 21 C -0.133 4.133 22 C -0.167 4.167 23 C 0.021 3.979 24 H 0.072 0.928 25 H 0.048 0.952 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.250 0.750 31 H 0.177 0.823 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.119 0.881 39 H 0.113 0.887 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 23.113 -9.440 -13.648 28.453 hybrid contribution -0.706 0.963 0.318 1.236 sum 22.407 -8.477 -13.330 27.415 Atomic orbital electron populations 1.69957 1.07333 1.27285 1.55575 1.25879 0.95832 1.00825 1.00224 0.85941 0.78537 0.80285 0.77880 1.19436 1.23938 1.19106 1.18860 0.86526 0.93662 1.38850 0.92932 1.44568 1.07809 1.34441 1.47604 1.21371 0.96882 0.92053 0.90128 1.22151 0.97548 0.98786 0.98167 1.20623 0.93614 0.92645 0.87522 1.45925 1.15452 1.57950 1.16824 1.19084 0.81227 0.78391 0.88376 1.90756 1.64853 1.59881 1.31224 1.22032 0.96861 1.06573 0.99537 1.23268 0.92821 0.90368 0.96937 1.21297 0.95309 1.00933 0.95967 1.22482 0.96005 1.00949 0.97060 1.22549 0.95642 1.02879 0.94712 1.21677 0.93998 1.00721 0.96918 1.22182 0.99154 0.97958 0.97370 1.21045 0.91725 0.90690 0.94390 0.92848 0.95153 0.92318 0.90869 0.89299 0.91608 0.75021 0.82313 0.91798 0.91940 0.90637 0.90978 0.89022 0.91101 0.88143 0.88706 0.91937 0.91898 0.92343 0.95343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.18 13.97 21.65 0.30 -59.87 16 2 C -0.03 -1.92 5.23 84.86 0.44 -1.48 16 3 Si 0.94 46.77 24.35 68.60 1.67 48.44 16 4 H -0.27 -12.27 6.62 99.48 0.66 -11.61 16 5 H -0.31 -15.64 7.11 99.48 0.71 -14.93 16 6 H -0.27 -12.87 6.63 99.48 0.66 -12.21 16 7 C -0.25 -14.32 10.05 84.03 0.84 -13.48 16 8 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 9 N -0.62 -29.67 2.78 -698.40 -1.94 -31.62 16 10 C 0.12 5.10 4.20 86.36 0.36 5.46 16 11 C -0.13 -4.08 5.55 30.67 0.17 -3.91 16 12 C 0.16 5.06 2.41 45.02 0.11 5.17 16 13 N -0.71 -17.72 5.07 -446.02 -2.26 -19.98 16 14 C 0.54 14.57 7.73 86.57 0.67 15.24 16 15 O -0.58 -20.40 13.77 -4.09 -0.06 -20.46 16 16 C -0.23 -4.41 9.94 23.43 0.23 -4.18 16 17 C -0.03 -0.58 6.15 -17.01 -0.10 -0.68 16 18 C -0.10 -2.06 4.81 30.52 0.15 -1.91 16 19 C -0.13 -1.78 6.88 31.71 0.22 -1.56 16 20 C -0.12 -1.21 6.94 31.92 0.22 -0.99 16 21 C -0.10 -1.03 6.64 30.86 0.21 -0.82 16 22 C -0.13 -4.35 5.65 30.67 0.17 -4.18 16 23 C 0.15 6.03 6.53 86.31 0.56 6.59 16 24 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 25 H 0.03 1.27 7.08 -2.39 -0.02 1.25 16 26 H 0.06 2.68 4.49 -2.39 -0.01 2.67 16 27 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.07 2.34 7.58 -2.38 -0.02 2.32 16 30 H 0.41 7.66 8.59 -92.70 -0.80 6.86 16 31 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.06 1.61 7.67 -2.39 -0.02 1.60 16 33 H 0.06 1.58 7.68 -2.39 -0.02 1.57 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.06 2.15 8.14 -2.39 -0.02 2.14 16 41 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 42 H 0.06 2.43 7.94 -2.39 -0.02 2.41 16 43 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -71.53 334.02 2.06 -69.47 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.10 Total: 14.74 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: 4.26 Total: -0.72 kcal Atomic # 7 Polarization: -107.57 SS G_CDS: -3.90 Total: -111.47 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.06 Total: -20.46 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.67 Total: 48.44 kcal Total: -71.53 2.06 -69.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730503974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.430 kcal (2) G-P(sol) polarization free energy of solvation -71.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds