Wall clock time and date at job start Tue Mar 31 2020 00:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 119.99611 * 2 1 4 4 H 1.48500 * 109.47124 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47499 * 299.99603 * 3 2 1 6 6 H 1.48497 * 109.47626 * 59.99960 * 3 2 1 7 7 C 1.38807 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99856 * 160.53483 * 7 2 1 9 9 N 1.36932 * 120.00044 * 340.52886 * 7 2 1 10 10 C 1.46500 * 120.00468 * 320.38980 * 9 7 2 11 11 N 1.46495 * 109.47367 * 269.99882 * 10 9 7 12 12 C 1.37266 * 132.83337 * 269.97418 * 11 10 9 13 13 O 1.21276 * 135.25596 * 348.00963 * 12 11 10 14 14 C 1.48915 * 89.47735 * 167.96785 * 12 11 10 15 15 H 1.08995 * 108.50137 * 262.73101 * 14 12 11 16 16 C 1.54012 * 119.52326 * 136.66383 * 14 12 11 17 17 C 1.57932 * 100.67102 * 194.69860 * 16 14 12 18 18 C 1.50412 * 106.69459 * 325.62284 * 17 16 14 19 19 C 1.51413 * 105.89781 * 103.28163 * 18 17 16 20 20 C 1.49543 * 115.09971 * 264.00181 * 19 18 17 21 21 C 1.45623 * 132.83018 * 89.99196 * 11 10 9 22 22 H 1.09003 * 113.61713 * 77.81168 * 21 11 10 23 23 C 1.46507 * 119.99694 * 140.38929 * 9 7 2 24 24 C 1.52997 * 117.49731 * 3.28811 * 23 9 7 25 25 C 1.53003 * 60.00130 * 252.51196 * 24 23 9 26 26 H 0.97000 * 119.99992 * 355.02511 * 1 2 3 27 27 H 1.08997 * 109.47397 * 149.99352 * 10 9 7 28 28 H 1.09000 * 109.46938 * 29.99995 * 10 9 7 29 29 H 1.08997 * 111.18311 * 312.55463 * 16 14 12 30 30 H 1.09004 * 111.17999 * 76.84460 * 16 14 12 31 31 H 1.09004 * 110.00972 * 84.91891 * 17 16 14 32 32 H 1.09000 * 110.00742 * 206.32619 * 17 16 14 33 33 H 1.09004 * 110.16006 * 222.37085 * 18 17 16 34 34 H 1.09004 * 110.15954 * 344.18789 * 18 17 16 35 35 H 1.08997 * 108.33532 * 25.64389 * 19 18 17 36 36 H 1.08997 * 108.33630 * 142.86641 * 19 18 17 37 37 H 1.09004 * 110.90577 * 299.24517 * 20 19 18 38 38 H 1.09002 * 110.37022 * 176.38821 * 20 19 18 39 39 H 1.09000 * 115.54957 * 148.99813 * 23 9 7 40 40 H 1.08994 * 117.50019 * 359.97438 * 24 23 9 41 41 H 1.09000 * 117.49728 * 145.02544 * 24 23 9 42 42 H 1.09007 * 117.49955 * 252.51458 * 25 24 23 43 43 H 1.08999 * 117.52072 * 107.47943 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0441 -1.2289 -0.3111 9 7 1.3844 -2.3539 0.3963 10 6 0.4608 -2.3322 1.5333 11 7 1.2008 -2.6002 2.7689 12 6 1.5070 -3.7572 3.4411 13 8 1.1463 -4.9131 3.3747 14 6 2.4691 -2.9960 4.2852 15 1 3.4690 -3.1236 3.8708 16 6 2.5128 -3.2505 5.8036 17 6 3.3411 -1.9955 6.2867 18 6 4.3411 -1.6950 5.2040 19 6 3.7967 -0.4952 4.4579 20 6 3.0201 -0.8163 3.2209 21 6 1.8760 -1.7348 3.7259 22 1 1.1967 -1.2280 4.4114 23 6 1.6384 -3.6080 -0.3173 24 6 2.6706 -3.5817 -1.4463 25 6 1.1807 -3.6967 -1.7745 26 1 -0.4850 0.8369 0.0728 27 1 -0.3040 -3.0964 1.3948 28 1 -0.0124 -1.3525 1.5984 29 1 1.5107 -3.2495 6.2321 30 1 3.0357 -4.1792 6.0323 31 1 2.6773 -1.1426 6.4284 32 1 3.8580 -2.2259 7.2182 33 1 5.3098 -1.4563 5.6432 34 1 4.4324 -2.5468 4.5300 35 1 3.1528 0.0662 5.1348 36 1 4.6345 0.1425 4.1762 37 1 3.6415 -1.3444 2.4977 38 1 2.6121 0.0942 2.7821 39 1 1.5750 -4.5134 0.2862 40 1 3.1604 -2.6314 -1.6584 41 1 3.2867 -4.4700 -1.5857 42 1 0.8165 -4.6607 -2.1299 43 1 0.6902 -2.8222 -2.2021 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749943402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:28 Heat of formation + Delta-G solvation = 63.050627 kcal Electronic energy + Delta-G solvation = -23493.848928 eV Core-core repulsion = 20349.371850 eV Total energy + Delta-G solvation = -3144.477078 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.18126 -37.35316 -36.91464 -35.24687 -33.39870 -32.03172 -30.90885 -28.69438 -26.16327 -24.82658 -23.76611 -22.77838 -21.39339 -20.74589 -20.37355 -19.72748 -17.72059 -16.72282 -16.53222 -15.52539 -15.45293 -14.80685 -14.70063 -14.38803 -14.10434 -13.85410 -13.50865 -13.04655 -12.80678 -12.76828 -12.25690 -12.09771 -11.87627 -11.49642 -11.42814 -11.04971 -10.89950 -10.73550 -10.58033 -10.52670 -10.33891 -10.26356 -10.15294 -10.05342 -9.75560 -9.69942 -9.34940 -9.02474 -8.60581 -7.93412 -6.71474 -5.97972 -3.60719 3.08916 3.20763 3.32646 3.33856 3.83745 4.31930 4.52159 4.76479 4.90559 4.92575 5.03739 5.09709 5.21255 5.31712 5.38318 5.43570 5.53909 5.62655 5.82185 5.85707 5.91840 5.92955 6.09116 6.10810 6.18802 6.19256 6.27456 6.30344 6.33730 6.36131 6.48336 6.57568 6.63092 6.64124 6.81912 7.01839 7.05401 7.19744 7.49383 7.64836 7.67864 8.35383 8.98919 9.01996 9.58944 10.19364 11.01637 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014990 B = 0.008304 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.452957 B = 3371.014646 C = 4516.664680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.020 3.980 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.254 4.254 8 H 0.063 0.937 9 N -0.542 5.542 10 C 0.361 3.639 11 N -0.622 5.622 12 C 0.518 3.482 13 O -0.528 6.528 14 C -0.175 4.175 15 H 0.117 0.883 16 C -0.095 4.095 17 C -0.122 4.122 18 C -0.139 4.139 19 C -0.122 4.122 20 C -0.105 4.105 21 C 0.147 3.853 22 H 0.082 0.918 23 C 0.114 3.886 24 C -0.193 4.193 25 C -0.214 4.214 26 H 0.257 0.743 27 H 0.051 0.949 28 H 0.116 0.884 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.945 -1.108 9.743 11.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.180 4.180 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.384 4.384 8 H 0.081 0.919 9 N -0.260 5.260 10 C 0.156 3.844 11 N -0.362 5.362 12 C 0.305 3.695 13 O -0.403 6.403 14 C -0.196 4.196 15 H 0.135 0.865 16 C -0.133 4.133 17 C -0.160 4.160 18 C -0.176 4.176 19 C -0.160 4.160 20 C -0.144 4.144 21 C 0.042 3.958 22 H 0.100 0.900 23 C 0.006 3.994 24 C -0.231 4.231 25 C -0.255 4.255 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.134 0.866 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.116 0.884 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.475 -1.502 9.401 10.982 hybrid contribution 0.421 1.057 -0.295 1.175 sum 5.896 -0.445 9.106 10.857 Atomic orbital electron populations 1.70015 1.05486 1.26389 1.50764 1.25208 0.94963 0.98739 0.99139 0.86451 0.80037 0.84058 0.77614 1.19743 1.21561 1.21056 1.19000 0.93285 0.84792 1.41334 0.91909 1.43933 1.50721 1.03452 1.27884 1.21142 0.86661 1.02286 0.74334 1.52733 1.53752 1.05849 1.23863 1.22058 0.80543 0.84746 0.82107 1.90632 1.61225 1.16681 1.71803 1.23577 1.02410 0.96535 0.97038 0.86528 1.22448 1.00497 0.97989 0.92396 1.22363 0.97676 0.98088 0.97852 1.21425 0.98083 0.99786 0.98309 1.20924 0.99678 0.97839 0.97578 1.21469 0.95992 1.00421 0.96485 1.21701 0.92884 0.92238 0.88948 0.90033 1.21309 1.00872 0.90631 0.86633 1.23005 0.92192 1.01790 1.06128 1.23302 0.96820 1.01103 1.04271 0.93304 0.93052 0.86642 0.91198 0.90558 0.91237 0.92430 0.92247 0.89445 0.92187 0.92902 0.90154 0.90586 0.89576 0.88443 0.90853 0.91150 0.88842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.44 11.49 55.49 0.64 -22.80 16 2 C 0.02 0.51 4.98 -17.43 -0.09 0.42 16 3 Si 0.89 19.88 29.09 -169.99 -4.95 14.93 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.25 -6.29 8.45 -15.06 -0.13 -6.42 16 8 H 0.06 1.60 6.75 -52.48 -0.35 1.24 16 9 N -0.54 -12.80 2.99 -169.35 -0.51 -13.30 16 10 C 0.36 8.25 6.97 -63.76 -0.44 7.80 16 11 N -0.62 -12.38 3.54 -201.36 -0.71 -13.10 16 12 C 0.52 10.18 9.49 -11.70 -0.11 10.07 16 13 O -0.53 -11.96 18.03 5.56 0.10 -11.86 16 14 C -0.17 -2.63 2.07 -94.29 -0.19 -2.83 16 15 H 0.12 1.75 4.80 -51.93 -0.25 1.50 16 16 C -0.09 -1.14 6.95 -23.50 -0.16 -1.30 16 17 C -0.12 -1.25 5.94 -25.32 -0.15 -1.40 16 18 C -0.14 -1.53 5.64 -28.82 -0.16 -1.69 16 19 C -0.12 -1.53 5.04 -29.24 -0.15 -1.67 16 20 C -0.11 -1.69 6.14 -27.29 -0.17 -1.86 16 21 C 0.15 2.42 4.06 -69.67 -0.28 2.14 16 22 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 23 C 0.11 2.52 6.56 -67.93 -0.45 2.07 16 24 C -0.19 -3.87 9.80 -26.73 -0.26 -4.13 16 25 C -0.21 -4.45 10.36 -26.73 -0.28 -4.73 16 26 H 0.26 6.60 8.32 -40.82 -0.34 6.26 16 27 H 0.05 1.20 8.07 -51.93 -0.42 0.78 16 28 H 0.12 2.86 5.59 -51.93 -0.29 2.57 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.70 6.76 -51.93 -0.35 0.35 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 1.04 4.63 -51.93 -0.24 0.80 16 35 H 0.06 0.70 6.79 -51.93 -0.35 0.35 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 1.44 8.03 -51.93 -0.42 1.02 16 38 H 0.08 1.38 7.62 -51.93 -0.40 0.98 16 39 H 0.09 1.91 8.14 -51.93 -0.42 1.48 16 40 H 0.10 2.08 6.47 -51.93 -0.34 1.75 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.09 2.17 8.14 -51.93 -0.42 1.75 16 LS Contribution 334.17 15.07 5.04 5.04 Total: -1.00 -27.44 334.17 -10.18 -37.63 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -6.77 Total: 7.00 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -3.02 Total: -3.53 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: -0.58 Total: -49.20 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.10 Total: -11.86 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.95 Total: 14.93 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.44 -10.18 -37.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749943402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.677 kcal (2) G-P(sol) polarization free energy of solvation -27.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds