Wall clock time and date at job start Tue Mar 31 2020 00:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 119.99611 * 2 1 4 4 H 1.48500 * 109.47124 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47499 * 299.99603 * 3 2 1 6 6 H 1.48497 * 109.47626 * 59.99960 * 3 2 1 7 7 C 1.38807 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99856 * 160.53483 * 7 2 1 9 9 N 1.36932 * 120.00044 * 340.52886 * 7 2 1 10 10 C 1.46500 * 120.00468 * 320.38980 * 9 7 2 11 11 N 1.46495 * 109.47367 * 269.99882 * 10 9 7 12 12 C 1.37266 * 132.83337 * 269.97418 * 11 10 9 13 13 O 1.21276 * 135.25596 * 348.00963 * 12 11 10 14 14 C 1.48915 * 89.47735 * 167.96785 * 12 11 10 15 15 H 1.08995 * 108.50137 * 262.73101 * 14 12 11 16 16 C 1.54012 * 119.52326 * 136.66383 * 14 12 11 17 17 C 1.57932 * 100.67102 * 194.69860 * 16 14 12 18 18 C 1.50412 * 106.69459 * 325.62284 * 17 16 14 19 19 C 1.51413 * 105.89781 * 103.28163 * 18 17 16 20 20 C 1.49543 * 115.09971 * 264.00181 * 19 18 17 21 21 C 1.45623 * 132.83018 * 89.99196 * 11 10 9 22 22 H 1.09003 * 113.61713 * 77.81168 * 21 11 10 23 23 C 1.46507 * 119.99694 * 140.38929 * 9 7 2 24 24 C 1.52997 * 117.49731 * 3.28811 * 23 9 7 25 25 C 1.53003 * 60.00130 * 252.51196 * 24 23 9 26 26 H 0.97000 * 119.99992 * 355.02511 * 1 2 3 27 27 H 1.08997 * 109.47397 * 149.99352 * 10 9 7 28 28 H 1.09000 * 109.46938 * 29.99995 * 10 9 7 29 29 H 1.08997 * 111.18311 * 312.55463 * 16 14 12 30 30 H 1.09004 * 111.17999 * 76.84460 * 16 14 12 31 31 H 1.09004 * 110.00972 * 84.91891 * 17 16 14 32 32 H 1.09000 * 110.00742 * 206.32619 * 17 16 14 33 33 H 1.09004 * 110.16006 * 222.37085 * 18 17 16 34 34 H 1.09004 * 110.15954 * 344.18789 * 18 17 16 35 35 H 1.08997 * 108.33532 * 25.64389 * 19 18 17 36 36 H 1.08997 * 108.33630 * 142.86641 * 19 18 17 37 37 H 1.09004 * 110.90577 * 299.24517 * 20 19 18 38 38 H 1.09002 * 110.37022 * 176.38821 * 20 19 18 39 39 H 1.09000 * 115.54957 * 148.99813 * 23 9 7 40 40 H 1.08994 * 117.50019 * 359.97438 * 24 23 9 41 41 H 1.09000 * 117.49728 * 145.02544 * 24 23 9 42 42 H 1.09007 * 117.49955 * 252.51458 * 25 24 23 43 43 H 1.08999 * 117.52072 * 107.47943 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0441 -1.2289 -0.3111 9 7 1.3844 -2.3539 0.3963 10 6 0.4608 -2.3322 1.5333 11 7 1.2008 -2.6002 2.7689 12 6 1.5070 -3.7572 3.4411 13 8 1.1463 -4.9131 3.3747 14 6 2.4691 -2.9960 4.2852 15 1 3.4690 -3.1236 3.8708 16 6 2.5128 -3.2505 5.8036 17 6 3.3411 -1.9955 6.2867 18 6 4.3411 -1.6950 5.2040 19 6 3.7967 -0.4952 4.4579 20 6 3.0201 -0.8163 3.2209 21 6 1.8760 -1.7348 3.7259 22 1 1.1967 -1.2280 4.4114 23 6 1.6384 -3.6080 -0.3173 24 6 2.6706 -3.5817 -1.4463 25 6 1.1807 -3.6967 -1.7745 26 1 -0.4850 0.8369 0.0728 27 1 -0.3040 -3.0964 1.3948 28 1 -0.0124 -1.3525 1.5984 29 1 1.5107 -3.2495 6.2321 30 1 3.0357 -4.1792 6.0323 31 1 2.6773 -1.1426 6.4284 32 1 3.8580 -2.2259 7.2182 33 1 5.3098 -1.4563 5.6432 34 1 4.4324 -2.5468 4.5300 35 1 3.1528 0.0662 5.1348 36 1 4.6345 0.1425 4.1762 37 1 3.6415 -1.3444 2.4977 38 1 2.6121 0.0942 2.7821 39 1 1.5750 -4.5134 0.2862 40 1 3.1604 -2.6314 -1.6584 41 1 3.2867 -4.4700 -1.5857 42 1 0.8165 -4.6607 -2.1299 43 1 0.6902 -2.8222 -2.2021 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749943402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:27 Heat of formation + Delta-G solvation = 49.307815 kcal Electronic energy + Delta-G solvation = -23494.444861 eV Core-core repulsion = 20349.371850 eV Total energy + Delta-G solvation = -3145.073011 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.54804 -38.85103 -38.58996 -36.68597 -35.19343 -33.17325 -32.68906 -30.19989 -27.62555 -26.38840 -25.14538 -24.16554 -23.07114 -22.00679 -21.82627 -21.30084 -19.06119 -18.50989 -17.99175 -17.21557 -17.12392 -16.61623 -16.12779 -15.67496 -15.48008 -15.28069 -14.71775 -14.59674 -14.32634 -14.07317 -13.70903 -13.39971 -13.32972 -13.16143 -12.93514 -12.76250 -12.55021 -12.27176 -12.14357 -11.92462 -11.81523 -11.52271 -11.44653 -11.43670 -11.20472 -11.07225 -10.77092 -10.63049 -10.48896 -9.54231 -8.60633 -7.90225 -5.57329 1.40169 1.46828 1.52338 1.55593 2.28860 2.47715 3.11270 3.21586 3.35750 3.49422 3.58633 3.89090 3.96674 4.08294 4.18764 4.27677 4.29560 4.40557 4.41804 4.45240 4.51403 4.56489 4.70048 4.85546 4.88718 4.95194 4.96128 5.10219 5.13122 5.21452 5.26919 5.30240 5.39092 5.43334 5.47309 5.48815 5.55549 5.65557 5.66651 5.87503 6.02263 6.42470 7.06269 7.40884 7.69373 8.28653 9.07199 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014990 B = 0.008304 C = 0.006198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.452957 B = 3371.014646 C = 4516.664680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.017 4.017 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.299 1.299 6 H -0.278 1.278 7 C -0.248 4.248 8 H 0.056 0.944 9 N -0.554 5.554 10 C 0.372 3.628 11 N -0.634 5.634 12 C 0.505 3.495 13 O -0.564 6.564 14 C -0.147 4.147 15 H 0.124 0.876 16 C -0.091 4.091 17 C -0.114 4.114 18 C -0.136 4.136 19 C -0.119 4.119 20 C -0.098 4.098 21 C 0.143 3.857 22 H 0.096 0.904 23 C 0.091 3.909 24 C -0.172 4.172 25 C -0.207 4.207 26 H 0.254 0.746 27 H 0.033 0.967 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.953 -0.927 11.575 14.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.215 4.215 3 Si 0.771 3.229 4 H -0.189 1.189 5 H -0.226 1.226 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.073 0.927 9 N -0.273 5.273 10 C 0.165 3.835 11 N -0.373 5.373 12 C 0.294 3.706 13 O -0.443 6.443 14 C -0.168 4.168 15 H 0.141 0.859 16 C -0.129 4.129 17 C -0.151 4.151 18 C -0.173 4.173 19 C -0.157 4.157 20 C -0.137 4.137 21 C 0.040 3.960 22 H 0.114 0.886 23 C -0.017 4.017 24 C -0.210 4.210 25 C -0.248 4.248 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.123 0.877 42 H 0.115 0.885 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.510 -1.314 11.258 13.597 hybrid contribution -0.230 0.942 -0.900 1.323 sum 7.280 -0.373 10.358 12.666 Atomic orbital electron populations 1.70126 1.06704 1.26722 1.52301 1.25746 0.95414 1.01037 0.99304 0.85618 0.79383 0.80811 0.77117 1.18892 1.22626 1.20421 1.18999 0.92815 0.85377 1.40599 0.92679 1.44000 1.50865 1.03745 1.28687 1.20676 0.86707 1.00411 0.75727 1.52734 1.53798 1.07389 1.23394 1.22906 0.80854 0.84152 0.82656 1.90595 1.62536 1.18164 1.72987 1.23476 1.00782 0.93585 0.98924 0.85873 1.22541 1.01418 0.99719 0.89271 1.22333 0.97292 0.97036 0.98479 1.21397 0.99346 0.98401 0.98119 1.20908 0.99663 0.98996 0.96100 1.21358 0.95807 0.98739 0.97768 1.21962 0.93062 0.92872 0.88144 0.88586 1.21405 1.03109 0.89999 0.87184 1.22998 0.91866 1.02446 1.03691 1.23211 0.97466 1.01202 1.02889 0.93629 0.94842 0.88711 0.90983 0.89388 0.90732 0.89989 0.90074 0.90536 0.90794 0.92225 0.92358 0.92994 0.89918 0.89845 0.87678 0.88499 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.92 11.49 21.65 0.25 -49.67 16 2 C -0.02 -0.86 4.98 84.86 0.42 -0.44 16 3 Si 0.94 41.26 29.09 68.60 2.00 43.25 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 6 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.25 -12.52 8.45 84.03 0.71 -11.81 16 8 H 0.06 2.84 6.75 -2.91 -0.02 2.82 16 9 N -0.55 -26.91 2.99 -689.69 -2.06 -28.97 16 10 C 0.37 17.67 6.97 170.96 1.19 18.86 16 11 N -0.63 -25.73 3.54 -907.91 -3.22 -28.95 16 12 C 0.50 19.93 9.49 86.05 0.82 20.74 16 13 O -0.56 -25.97 18.03 -3.02 -0.05 -26.03 16 14 C -0.15 -4.21 2.07 -12.38 -0.03 -4.23 16 15 H 0.12 3.48 4.80 -2.39 -0.01 3.47 16 16 C -0.09 -1.90 6.95 32.69 0.23 -1.67 16 17 C -0.11 -1.84 5.94 31.51 0.19 -1.65 16 18 C -0.14 -2.47 5.64 29.24 0.17 -2.30 16 19 C -0.12 -2.63 5.04 28.97 0.15 -2.48 16 20 C -0.10 -3.08 6.14 30.23 0.19 -2.89 16 21 C 0.14 4.60 4.06 44.33 0.18 4.78 16 22 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 23 C 0.09 4.07 6.56 44.99 0.30 4.36 16 24 C -0.17 -6.75 9.80 30.59 0.30 -6.45 16 25 C -0.21 -8.58 10.36 30.60 0.32 -8.27 16 26 H 0.25 13.43 8.32 -92.71 -0.77 12.66 16 27 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 28 H 0.10 4.93 5.59 -2.39 -0.01 4.91 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.07 1.18 6.76 -2.38 -0.02 1.16 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.08 1.59 4.63 -2.39 -0.01 1.58 16 35 H 0.07 1.47 6.79 -2.39 -0.02 1.45 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.06 2.07 8.03 -2.39 -0.02 2.05 16 38 H 0.05 1.87 7.62 -2.39 -0.02 1.85 16 39 H 0.08 3.72 8.14 -2.39 -0.02 3.70 16 40 H 0.08 3.53 6.47 -2.39 -0.02 3.52 16 41 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 42 H 0.10 3.47 8.14 -2.38 -0.02 3.45 16 43 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -61.04 334.17 3.03 -58.02 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: 1.00 Total: 25.80 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 5.12 Total: 6.54 kcal Atomic # 7 Polarization: -102.56 SS G_CDS: -5.03 Total: -107.59 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.05 Total: -26.03 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.00 Total: 43.25 kcal Total: -61.04 3.03 -58.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749943402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.323 kcal (2) G-P(sol) polarization free energy of solvation -61.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds