Wall clock time and date at job start Tue Mar 31 2020 00:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99897 * 2 1 4 4 H 1.48506 * 109.47126 * 239.99845 * 3 2 1 5 5 H 1.48504 * 109.47090 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47331 * 119.99860 * 3 2 1 7 7 C 1.38809 * 120.00427 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00721 * 203.72330 * 7 2 1 9 9 N 1.36939 * 119.99965 * 24.00516 * 7 2 1 10 10 C 1.46509 * 119.99884 * 34.89911 * 9 7 2 11 11 N 1.46496 * 109.46718 * 90.00269 * 10 9 7 12 12 C 1.34586 * 134.61389 * 269.63735 * 11 10 9 13 13 O 1.21283 * 131.84482 * 358.98714 * 12 11 10 14 14 C 1.50427 * 96.30291 * 179.01703 * 12 11 10 15 15 H 1.09002 * 115.93204 * 247.00981 * 14 12 11 16 16 C 1.53040 * 113.35761 * 112.64488 * 14 12 11 17 17 C 1.52818 * 109.28818 * 189.75703 * 16 14 12 18 18 C 1.52191 * 110.57017 * 94.96242 * 17 16 14 19 19 C 1.52236 * 111.52025 * 296.59729 * 18 17 16 20 20 C 1.52671 * 110.76344 * 64.04407 * 19 18 17 21 21 C 1.46509 * 134.61212 * 90.00065 * 11 10 9 22 22 H 1.09001 * 113.36542 * 297.51382 * 21 11 10 23 23 C 1.46495 * 120.00107 * 214.90775 * 9 7 2 24 24 C 1.52998 * 117.50115 * 12.79732 * 23 9 7 25 25 C 1.52999 * 117.49585 * 304.17259 * 23 9 7 26 26 H 0.96999 * 120.00320 * 4.61389 * 1 2 3 27 27 H 1.08994 * 109.46969 * 210.00118 * 10 9 7 28 28 H 1.09003 * 109.47034 * 330.00624 * 10 9 7 29 29 H 1.09006 * 109.50216 * 69.81273 * 16 14 12 30 30 H 1.09000 * 109.50431 * 309.70376 * 16 14 12 31 31 H 1.09004 * 109.25951 * 334.68006 * 17 16 14 32 32 H 1.09010 * 109.22462 * 215.22882 * 17 16 14 33 33 H 1.08999 * 109.07165 * 176.07275 * 18 17 16 34 34 H 1.09000 * 109.01604 * 57.08862 * 18 17 16 35 35 H 1.08991 * 109.22383 * 303.71098 * 19 18 17 36 36 H 1.09007 * 109.18205 * 184.34428 * 19 18 17 37 37 H 1.08998 * 109.48050 * 144.44266 * 20 19 18 38 38 H 1.08998 * 109.49132 * 24.41789 * 20 19 18 39 39 H 1.09003 * 115.54843 * 158.50974 * 23 9 7 40 40 H 1.08999 * 117.49391 * 359.97438 * 24 23 9 41 41 H 1.08995 * 117.49937 * 145.02627 * 24 23 9 42 42 H 1.09007 * 117.50038 * 214.98153 * 25 23 9 43 43 H 1.08995 * 117.50006 * 0.02562 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0219 -1.2415 0.3768 9 7 1.4146 -2.3370 -0.4814 10 6 0.4893 -2.2540 -1.6143 11 7 1.2349 -2.4085 -2.8659 12 6 1.8428 -1.5595 -3.7150 13 8 1.9515 -0.3516 -3.7118 14 6 2.3418 -2.6096 -4.6695 15 1 3.4231 -2.7401 -4.7119 16 6 1.6723 -2.5472 -6.0443 17 6 2.0598 -3.7858 -6.8511 18 6 0.9999 -4.8689 -6.7103 19 6 0.8832 -5.3523 -5.2715 20 6 0.4031 -4.2261 -4.3594 21 6 1.6148 -3.5492 -3.7031 22 1 2.2687 -4.2587 -3.1962 23 6 1.7022 -3.6340 0.1359 24 6 2.4264 -3.6299 1.4837 25 6 3.1671 -4.0677 0.2185 26 1 -0.4850 0.8373 -0.0676 27 1 -0.2548 -3.0464 -1.5345 28 1 -0.0095 -1.2848 -1.6059 29 1 2.0040 -1.6519 -6.5703 30 1 0.5897 -2.5173 -5.9209 31 1 3.0141 -4.1674 -6.4880 32 1 2.1581 -3.5134 -7.9021 33 1 1.2648 -5.7117 -7.3487 34 1 0.0381 -4.4683 -7.0306 35 1 1.8579 -5.7000 -4.9295 36 1 0.1721 -6.1774 -5.2274 37 1 -0.2469 -4.6363 -3.5865 38 1 -0.1490 -3.4926 -4.9469 39 1 0.9561 -4.4106 -0.0326 40 1 2.6892 -2.6621 1.9107 41 1 2.1568 -4.4038 2.2022 42 1 3.3848 -5.1297 0.1048 43 1 3.9168 -3.3878 -0.1861 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749943403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:30 Heat of formation + Delta-G solvation = 20.301947 kcal Electronic energy + Delta-G solvation = -23171.766360 eV Core-core repulsion = 20025.435560 eV Total energy + Delta-G solvation = -3146.330800 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.30021 -38.80962 -38.32109 -36.54294 -35.29938 -33.07282 -32.49489 -30.55960 -28.07830 -26.36110 -25.31740 -24.00392 -22.98803 -21.88880 -21.53576 -21.37446 -19.12659 -18.25915 -17.90680 -17.47707 -17.22782 -16.65981 -16.24066 -15.94429 -15.73058 -14.92981 -14.79377 -14.58517 -14.00788 -13.76809 -13.66981 -13.48197 -13.33919 -13.21001 -12.91467 -12.83349 -12.73192 -12.26962 -12.21426 -12.02484 -11.78600 -11.73332 -11.55790 -11.52296 -11.24459 -11.03553 -10.99837 -10.56044 -10.43834 -9.58892 -8.75625 -8.02240 -5.60412 1.27672 1.36567 1.44978 1.69981 2.28577 2.44559 3.02094 3.09301 3.44443 3.45374 3.68009 3.73783 4.13489 4.15762 4.24135 4.25262 4.30035 4.38603 4.42291 4.44234 4.49250 4.57250 4.77572 4.79279 4.91534 4.92608 5.00613 5.12394 5.18202 5.21901 5.27237 5.31193 5.37853 5.41401 5.42852 5.51554 5.53606 5.58822 5.63965 5.94948 6.17843 6.31499 6.98528 7.47799 7.68291 8.13778 8.92430 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018430 B = 0.006638 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.924263 B = 4217.360201 C = 5128.686930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.017 4.017 3 Si 0.937 3.063 4 H -0.300 1.300 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.259 4.259 8 H 0.049 0.951 9 N -0.557 5.557 10 C 0.372 3.628 11 N -0.625 5.625 12 C 0.488 3.512 13 O -0.590 6.590 14 C -0.122 4.122 15 H 0.132 0.868 16 C -0.098 4.098 17 C -0.109 4.109 18 C -0.117 4.117 19 C -0.108 4.108 20 C -0.121 4.121 21 C 0.130 3.870 22 H 0.097 0.903 23 C 0.100 3.900 24 C -0.192 4.192 25 C -0.199 4.199 26 H 0.253 0.747 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.116 0.884 40 H 0.066 0.934 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.677 -15.698 -12.208 19.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.215 4.215 3 Si 0.766 3.234 4 H -0.228 1.228 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.389 4.389 8 H 0.066 0.934 9 N -0.276 5.276 10 C 0.166 3.834 11 N -0.363 5.363 12 C 0.275 3.725 13 O -0.469 6.469 14 C -0.144 4.144 15 H 0.150 0.850 16 C -0.136 4.136 17 C -0.146 4.146 18 C -0.154 4.154 19 C -0.145 4.145 20 C -0.159 4.159 21 C 0.027 3.973 22 H 0.115 0.885 23 C -0.008 4.008 24 C -0.231 4.231 25 C -0.240 4.240 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.134 0.866 40 H 0.085 0.915 41 H 0.127 0.873 42 H 0.131 0.869 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.410 -14.890 -11.841 19.076 hybrid contribution 0.470 1.749 0.549 1.892 sum 1.880 -13.141 -11.292 17.428 Atomic orbital electron populations 1.70061 1.06219 1.26670 1.51838 1.25482 0.95528 1.00823 0.99674 0.85818 0.78693 0.81314 0.77599 1.22764 1.21275 1.19121 1.18834 0.94788 0.87445 1.37829 0.93365 1.44099 1.51278 1.02060 1.30116 1.20815 0.86911 1.01695 0.73954 1.52007 1.53088 1.08855 1.22301 1.23071 0.77835 0.87415 0.84164 1.90595 1.61887 1.16789 1.77661 1.23298 1.02685 0.92364 0.96012 0.84981 1.21454 1.00434 1.00017 0.91695 1.21345 0.99778 0.93651 0.99822 1.21325 0.98973 0.98616 0.96482 1.21257 1.02329 0.96634 0.94329 1.21959 0.96255 0.98604 0.99128 1.22644 0.96350 0.90016 0.88324 0.88489 1.21486 0.93321 0.88937 0.97011 1.23065 1.06389 1.01833 0.91773 1.23269 0.97431 1.00819 1.02442 0.93784 0.90687 0.90430 0.91921 0.91238 0.90773 0.90542 0.90214 0.92307 0.90930 0.90561 0.91681 0.91519 0.86611 0.91497 0.87349 0.86886 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.47 11.45 21.65 0.25 -54.22 16 2 C -0.02 -0.98 4.91 84.86 0.42 -0.56 16 3 Si 0.94 49.79 29.62 68.60 2.03 51.82 16 4 H -0.30 -17.07 7.11 99.48 0.71 -16.36 16 5 H -0.29 -15.01 7.11 99.48 0.71 -14.30 16 6 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 7 C -0.26 -14.66 8.16 84.03 0.69 -13.97 16 8 H 0.05 2.81 7.17 -2.91 -0.02 2.79 16 9 N -0.56 -27.34 3.04 -689.69 -2.10 -29.44 16 10 C 0.37 17.45 7.08 170.96 1.21 18.66 16 11 N -0.63 -25.53 3.42 -887.13 -3.03 -28.57 16 12 C 0.49 21.60 8.73 80.00 0.70 22.29 16 13 O -0.59 -33.05 18.03 -3.04 -0.05 -33.10 16 14 C -0.12 -3.54 4.04 -11.57 -0.05 -3.59 16 15 H 0.13 3.38 8.10 -2.39 -0.02 3.36 16 16 C -0.10 -2.26 5.06 30.55 0.15 -2.11 16 17 C -0.11 -1.65 5.69 30.27 0.17 -1.48 16 18 C -0.12 -1.54 5.46 30.07 0.16 -1.37 16 19 C -0.11 -1.59 5.67 30.23 0.17 -1.41 16 20 C -0.12 -2.64 5.32 30.66 0.16 -2.48 16 21 C 0.13 3.66 4.17 37.61 0.16 3.81 16 22 H 0.10 2.54 8.06 -2.39 -0.02 2.52 16 23 C 0.10 3.95 6.61 44.99 0.30 4.25 16 24 C -0.19 -7.20 9.79 30.60 0.30 -6.90 16 25 C -0.20 -6.94 10.12 30.60 0.31 -6.63 16 26 H 0.25 14.96 8.32 -92.71 -0.77 14.19 16 27 H 0.08 3.08 8.04 -2.39 -0.02 3.07 16 28 H 0.08 4.41 5.43 -2.39 -0.01 4.40 16 29 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.07 1.71 5.36 -2.39 -0.01 1.70 16 31 H 0.07 1.03 7.72 -2.38 -0.02 1.01 16 32 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.81 8.01 -2.39 -0.02 0.79 16 35 H 0.07 1.00 7.69 -2.39 -0.02 0.98 16 36 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.07 1.59 5.37 -2.39 -0.01 1.58 16 39 H 0.12 3.92 8.10 -2.39 -0.02 3.90 16 40 H 0.07 2.96 6.84 -2.39 -0.02 2.95 16 41 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 42 H 0.11 3.07 8.14 -2.38 -0.02 3.05 16 43 H 0.06 2.36 8.11 -2.39 -0.02 2.34 16 Total: -1.00 -73.56 336.99 2.93 -70.63 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.99 Total: 14.36 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 4.85 Total: 8.52 kcal Atomic # 7 Polarization: -107.34 SS G_CDS: -4.88 Total: -112.22 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -0.05 Total: -33.10 kcal Atomic # 14 Polarization: 49.79 SS G_CDS: 2.03 Total: 51.82 kcal Total: -73.56 2.93 -70.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749943403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.933 kcal (2) G-P(sol) polarization free energy of solvation -73.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds