Wall clock time and date at job start Tue Mar 31 2020 00:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00237 * 2 1 4 4 H 1.48499 * 109.47284 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47270 * 239.99816 * 3 2 1 6 6 H 1.48499 * 109.47189 * 119.99975 * 3 2 1 7 7 C 1.38816 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99733 * 208.08962 * 7 2 1 9 9 N 1.36931 * 120.00175 * 28.08726 * 7 2 1 10 10 C 1.46502 * 119.99760 * 33.86719 * 9 7 2 11 11 N 1.46500 * 109.47295 * 89.99699 * 10 9 7 12 12 C 1.33812 * 133.11514 * 90.00148 * 11 10 9 13 13 O 1.21280 * 133.20059 * 0.41360 * 12 11 10 14 14 C 1.49905 * 93.59010 * 180.39407 * 12 11 10 15 15 H 1.09004 * 114.45028 * 114.18979 * 14 12 11 16 16 C 1.53242 * 113.54913 * 246.70132 * 14 12 11 17 17 C 1.52792 * 109.26105 * 172.45075 * 16 14 12 18 18 C 1.52192 * 110.64960 * 264.79854 * 17 16 14 19 19 C 1.52214 * 111.44682 * 63.53602 * 18 17 16 20 20 C 1.52734 * 110.72500 * 296.21439 * 19 18 17 21 21 C 1.45760 * 133.11566 * 269.64581 * 11 10 9 22 22 H 1.09005 * 113.80378 * 64.47967 * 21 11 10 23 23 C 1.46495 * 120.00194 * 213.86391 * 9 7 2 24 24 C 1.52997 * 117.50104 * 7.23395 * 23 9 7 25 25 C 1.53003 * 117.49681 * 298.57465 * 23 9 7 26 26 H 0.96994 * 120.00520 * 184.66070 * 1 2 3 27 27 H 1.08994 * 109.46913 * 209.99996 * 10 9 7 28 28 H 1.09001 * 109.47091 * 329.99632 * 10 9 7 29 29 H 1.09002 * 109.50786 * 292.38056 * 16 14 12 30 30 H 1.08997 * 109.50657 * 52.51492 * 16 14 12 31 31 H 1.08998 * 109.23690 * 25.09415 * 17 16 14 32 32 H 1.08990 * 109.23994 * 144.49048 * 17 16 14 33 33 H 1.09000 * 109.08816 * 184.04004 * 18 17 16 34 34 H 1.09005 * 109.08831 * 303.09178 * 18 17 16 35 35 H 1.09005 * 109.22626 * 56.53230 * 19 18 17 36 36 H 1.08996 * 109.23400 * 175.93802 * 19 18 17 37 37 H 1.08994 * 109.49782 * 215.38956 * 20 19 18 38 38 H 1.08994 * 109.49767 * 335.45876 * 20 19 18 39 39 H 1.08998 * 115.55285 * 152.91117 * 23 9 7 40 40 H 1.09004 * 117.49420 * 0.02562 * 24 23 9 41 41 H 1.08997 * 117.49996 * 145.01579 * 24 23 9 42 42 H 1.09002 * 117.49922 * 214.97588 * 25 23 9 43 43 H 1.08996 * 117.50076 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 -0.0006 5 1 3.1040 1.6963 -1.2125 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 2.9948 -1.2571 0.4410 9 7 1.4465 -2.3185 -0.5573 10 6 0.5746 -2.1918 -1.7278 11 7 1.3789 -2.2874 -2.9485 12 6 1.7523 -3.3153 -3.7195 13 8 1.5448 -4.5092 -3.6692 14 6 2.5213 -2.4463 -4.6685 15 1 3.5974 -2.6204 -4.6686 16 6 1.9123 -2.3855 -6.0735 17 6 2.6552 -1.3368 -6.8998 18 6 1.9267 -0.0014 -6.8523 19 6 1.8907 0.5629 -5.4391 20 6 1.0907 -0.3505 -4.5126 21 6 2.0606 -1.2970 -3.7725 22 1 2.8749 -0.7841 -3.2606 23 6 1.7152 -3.6394 0.0163 24 6 2.4920 -3.6930 1.3334 25 6 3.1670 -4.1222 0.0283 26 1 -0.4850 -0.8372 0.0682 27 1 -0.1662 -2.9912 -1.7172 28 1 0.0683 -1.2269 -1.7009 29 1 2.0058 -3.3599 -6.5532 30 1 0.8592 -2.1136 -6.0022 31 1 3.6615 -1.2114 -6.5001 32 1 2.7197 -1.6743 -7.9342 33 1 2.4369 0.7063 -7.5058 34 1 0.9050 -0.1399 -7.2060 35 1 2.9096 0.6529 -5.0624 36 1 1.4267 1.5490 -5.4580 37 1 0.5486 0.2537 -3.7853 38 1 0.3827 -0.9348 -5.1002 39 1 0.9376 -4.3870 -0.1401 40 1 2.8027 -2.7452 1.7733 41 1 2.2255 -4.4759 2.0434 42 1 3.3444 -5.1875 -0.1197 43 1 3.9221 -3.4573 -0.3910 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749943404.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:33 Heat of formation + Delta-G solvation = 35.089232 kcal Electronic energy + Delta-G solvation = -23327.714914 eV Core-core repulsion = 20182.025340 eV Total energy + Delta-G solvation = -3145.689575 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.06702 -37.32844 -36.95935 -35.30779 -33.77759 -31.75071 -30.86039 -29.06411 -26.55733 -24.76808 -23.78885 -22.67187 -21.47365 -20.59743 -20.40964 -20.02838 -17.58254 -16.98576 -16.50291 -16.29392 -15.74450 -15.24924 -14.86761 -14.13896 -13.72617 -13.71946 -13.65303 -13.12662 -12.96335 -12.66383 -12.37610 -12.20131 -11.92465 -11.72005 -11.44516 -11.09773 -10.85730 -10.77261 -10.69430 -10.67913 -10.50909 -10.25439 -10.18394 -10.04075 -9.96456 -9.61628 -9.48164 -9.10528 -8.48078 -8.11148 -7.01967 -6.28413 -3.55259 3.15362 3.35961 3.39170 3.57493 3.80559 4.40150 4.43406 4.70196 4.81708 4.85436 5.00786 5.08851 5.15394 5.22799 5.29008 5.38069 5.42282 5.47307 5.74411 5.79395 5.85430 5.91334 5.96991 5.98971 6.02613 6.09071 6.14796 6.17472 6.22896 6.28231 6.40129 6.42148 6.45430 6.49816 6.63397 6.68547 6.86249 7.03825 7.40608 7.52182 7.93157 8.35192 8.86721 8.98517 9.59011 10.02145 10.92765 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014970 B = 0.008038 C = 0.005830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.967068 B = 3482.563587 C = 4801.476912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C -0.011 4.011 3 Si 1.058 2.942 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.355 4.355 8 H 0.056 0.944 9 N -0.551 5.551 10 C 0.350 3.650 11 N -0.605 5.605 12 C 0.519 3.481 13 O -0.539 6.539 14 C -0.153 4.153 15 H 0.110 0.890 16 C -0.100 4.100 17 C -0.115 4.115 18 C -0.117 4.117 19 C -0.115 4.115 20 C -0.126 4.126 21 C 0.136 3.864 22 H 0.095 0.905 23 C 0.118 3.882 24 C -0.187 4.187 25 C -0.216 4.216 26 H 0.270 0.730 27 H 0.056 0.944 28 H 0.108 0.892 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.582 0.510 -11.144 11.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.215 4.215 3 Si 0.886 3.114 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.483 4.483 8 H 0.074 0.926 9 N -0.270 5.270 10 C 0.144 3.856 11 N -0.341 5.341 12 C 0.303 3.697 13 O -0.416 6.416 14 C -0.175 4.175 15 H 0.128 0.872 16 C -0.138 4.138 17 C -0.153 4.153 18 C -0.155 4.155 19 C -0.153 4.153 20 C -0.164 4.164 21 C 0.031 3.969 22 H 0.113 0.887 23 C 0.009 3.991 24 C -0.225 4.225 25 C -0.256 4.256 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.125 0.875 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.099 1.591 -10.896 11.439 hybrid contribution 0.498 -1.696 0.377 1.807 sum 3.597 -0.105 -10.519 11.118 Atomic orbital electron populations 1.70830 1.06763 1.30235 1.45779 1.25911 0.96231 1.01598 0.97709 0.83631 0.75120 0.75993 0.76625 1.20855 1.21626 1.21730 1.19787 0.99911 0.88777 1.39863 0.92630 1.44078 1.55406 1.01339 1.26184 1.21218 0.87425 1.02258 0.74665 1.51661 1.50262 1.07118 1.25090 1.21345 0.79340 0.86019 0.82960 1.90624 1.61427 1.13868 1.75708 1.23368 1.01704 0.96232 0.96199 0.87187 1.21450 1.00432 0.99329 0.92609 1.21367 0.99667 0.94776 0.99484 1.21319 1.00537 0.96607 0.97003 1.21287 1.00962 0.98541 0.94502 1.22097 0.98126 0.97818 0.98378 1.22384 0.94345 0.91456 0.88700 0.88700 1.21179 0.91662 0.89318 0.96930 1.23066 1.06226 1.02307 0.90914 1.23273 1.00248 0.99421 1.02700 0.91919 0.92632 0.87450 0.91451 0.90564 0.91695 0.92140 0.92314 0.92255 0.91647 0.91885 0.90839 0.90900 0.89577 0.88169 0.90529 0.90744 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.54 12.20 55.49 0.68 -23.86 16 2 C -0.01 -0.28 4.81 -17.43 -0.08 -0.36 16 3 Si 1.06 23.48 30.00 -169.99 -5.10 18.38 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.35 -9.19 8.29 -15.06 -0.12 -9.31 16 8 H 0.06 1.50 6.98 -52.49 -0.37 1.14 16 9 N -0.55 -13.33 2.84 -169.35 -0.48 -13.81 16 10 C 0.35 7.95 6.52 -63.75 -0.42 7.54 16 11 N -0.60 -12.25 3.30 -184.25 -0.61 -12.85 16 12 C 0.52 10.42 8.87 -16.63 -0.15 10.27 16 13 O -0.54 -12.58 18.03 5.56 0.10 -12.48 16 14 C -0.15 -2.35 3.82 -92.13 -0.35 -2.71 16 15 H 0.11 1.57 8.10 -51.93 -0.42 1.15 16 16 C -0.10 -1.26 5.08 -26.71 -0.14 -1.39 16 17 C -0.12 -1.17 5.68 -27.25 -0.15 -1.33 16 18 C -0.12 -1.17 5.46 -27.54 -0.15 -1.32 16 19 C -0.11 -1.36 5.67 -27.27 -0.15 -1.52 16 20 C -0.13 -1.84 5.38 -26.13 -0.14 -1.99 16 21 C 0.14 2.30 4.32 -72.50 -0.31 1.99 16 22 H 0.10 1.72 8.09 -51.93 -0.42 1.30 16 23 C 0.12 2.64 6.58 -67.93 -0.45 2.19 16 24 C -0.19 -3.84 9.77 -26.70 -0.26 -4.11 16 25 C -0.22 -4.48 10.30 -26.69 -0.27 -4.75 16 26 H 0.27 7.49 7.17 -40.82 -0.29 7.20 16 27 H 0.06 1.25 8.06 -51.93 -0.42 0.83 16 28 H 0.11 2.61 5.31 -51.93 -0.28 2.33 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.99 5.35 -51.93 -0.28 0.71 16 31 H 0.06 0.65 7.72 -51.93 -0.40 0.25 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.58 8.02 -51.93 -0.42 0.16 16 35 H 0.06 0.79 7.70 -51.93 -0.40 0.39 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.07 1.02 5.36 -51.93 -0.28 0.75 16 39 H 0.09 1.88 8.13 -51.93 -0.42 1.46 16 40 H 0.10 2.24 6.61 -51.93 -0.34 1.89 16 41 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 42 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 335.97 15.07 5.06 5.06 Total: -1.00 -28.95 335.97 -10.41 -39.36 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -6.91 Total: 7.00 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -3.16 Total: -6.79 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.41 Total: -50.53 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.10 Total: -12.48 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -5.10 Total: 18.38 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.95 -10.41 -39.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749943404.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.448 kcal (2) G-P(sol) polarization free energy of solvation -28.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds